Publications

  • Gupta Vikash, Demirer Mutlu, Bigelow Matthew, Little Kevin, Candemir Sema, Prevedello Luciano, White Richard, O'Donnell Thomas, Wels Michael, Erdal BarbarosPerformance of a Deep Neural Network Algorithm Based on a Small Medical Image Dataset: Incremental Impact of 3D-to-2D Reformation Combined with Novel Data Augmentation, Photometric Conversion, or Transfer Learning, Journal of Digital Imaging, 2019

  • Demirer Mutlu, Candemir Sema, Bigelow Matthew, Yu Sarah, Gupta Vikash, Prevedello Luciano M, White Richard D, Yu Joseph S, Grimmer Rainer, Wels Michael, Wimmer Andreas, Halabi Abdul H, Ihsani Alvin, O’Donnell Thomas P, Erdal, Barbaros SA User Interface for Optimizing Radiologist Engagement in Image-Data Curation for Artificial IntelligenceRadiology: Artificial Intelligence, Radiological Society of North America​ 2019

  • Vikash Gupta, Sophia I. Thomopoulos, Conor Corbin, Faisal M. Rashid, Paul M. Thompson, FiberNET 2.0: An automatic neural network based tool for clustering white matter fibers in the brainISBI 2018 [bioarxiv version]

  • Mark S. Shiroishi, Vikash Gupta, Bavrina Bigjahan, Steven Y. Cen, Faisal Rashid, Darryl H. Hwang, Alexander Lerner, Orest B. Boyko, Chia-Shang Jason Liu, Meng Law, Paul M. Thompson, Neda Jahanshad, Brain cortical structural differences between non-central nervous system cancer patients treated with and without chemotherapy compared to non-cancer controls: a cross-sectional pilot MRI study using clinically-indicated scans, 13th International Conference on Medical Information Processing and Analysis (SIPAIM) 2017

  • Mark Shiroshi, Vikash Gupta, Joshua Faskowitz, Paul Thompson, Neda Jahanshad and others, Towards accurate automated brain morphometry using contrast-enhanced T1-weighted scans a pilot study, Society for Neurosciences, 2017
  • Vikash Gupta, Sophia I. Thomopoulos, Faisal M. Rashid, Paul M. Thompson, FiberNET: An ensembled deep learning framework for clustering white matter fibers, MICCAI 2017 [paper] [poster]
  • Vikash Gupta, Gautam Prasad and Paul Thompson, Clustering white matter fibers using support vector machines: A volumetric conformal mapping approach, 12th International Conference on Medical Information Processing and Analysis (SIPAIM) 2016 
  • Vikash Gupta, Gautam Prasad and Paul Thompson, A volumetric conformal mapping approach for spectral clustering of white matter fibers,  Spectral and Shape Analysis in Medical Imaging (SESAMI), MICCAI 2016
  • Vikash Gupta, Gregoire Malandain, Nicholas Ayache, Xavier Pennec. A framework for creating population specific multimodal brain atlas using clinical T1 and diffusion tensor images, Workshop on Computational Diffusion MRI at MICCAI, 2015 [paper]
  • Vikash Gupta, Nicholas Ayache, Xavier Pennec, Improving DTI resolution from a single clinical acquisition: a statistical approach using spatial prior. Medical Image Computing and Computer Assisted Intervention 2013 (MICCAI), volume 8151 of Lecture Notes in Computer Science - LNCS, Nagoya, Japon, pages 477-484, 2013. Springer
  • Vikash Gupta, Hari Kr. Voruganti, Bhaskar Dasgupta, Domain Mapping for Volumetric Parameterization using Harmonic Functions. Computer Aided Design and Application, volume 11, pages 426-435, June, 2013
  • Furui Wang, Milind Shastri, Christopher Jones, Vikash Gupta, Christian Osswald, Xuan Kang, Derek Kamper, Nilanjan Sarkar. Design and Control of an Actuated Thumb Exoskeleton for Hand Rehabilitation following Stroke. IEEE International Conference on Robotics and Automation, Shanghai, China., pages 3688-3693, May, 2011
  • Hari K. Voruganti, Vikash Gupta, Bhaskar Dasgupta, Volumetric Parameterization of 3D non-convex shapes. Seventh International Conference on Curves and Surfaces 2010, Avignon, France.
  • Hari K. Voruganti, Vikash Gupta, Bhaskar Dasgupta, Domain Mapping for Spherical Parametriza- tion using Harmonic Function Theory,IISc Centenary-International Conference on Advances in Mechanical Engineering (IC-ICAME), 2008, Bangalore, India.
  • Vikash Gupta, Ashish Singla, Bhaskar Dasgupta, Anjali Kulkarni, Design and development of an 8-R snake-like manipulator, IISc Centenary-International Conference on Advances in Mechanical Engineering (IC-ICAME), 2008, Bangalore, India.
Abstracts:
  • Conor Corbin, Vikash Gupta, Talia M. Nir, Julio E. Villalon, Faisal Rashid, Sophia I. Thomopoulos, Neda Jahanshad, Paul M. Thompson. White Matter Changes in Parkinson's Disease Mapped with a Novel Tract Mapping Algorithm, American Academy of Neurology 2018, Los Angeles, CA.
  • Mark Shiroishi, Vikash Gupta, Joshua Faskowitz, Bavrina Bigjahan, Steven Cen, Faisal Rashid, Darryl Hwang, Alexander Lerner, Orest Boyko, Chia-Shang Jason Liu, Meng Law, Paul Thompson, Neda Jahanshad (2018). The ENIGMA Cancer and Chemotherapy Working Group and Cancer-Related Cognitive Impairment, American Academy of Neurology 2018, Los Angeles, CA.
  • Vikash Gupta, Sophia I. Thomopoulos, Conor K. Corbin, Faisal M. Rashid, Paul M. Thompson, FiberNet 2.0: A robust white matter classifier, Medical Imaging meets NIPS, med-NIPS 2017 [paper]
  • Fabrizio Pizzagalli, Vikash Gupta, Joshua Faskowitz, Peter Kochunov, Paul Thompson, Neda Jahanashad, Local exploration of human brain folding, Organization for Human Brain Mapping, 2017 [paper]
  • Faisal Rashid, Vikash Gupta, Paul Thompson, FiberNet: A deep learning framework for clustering white matter tracts in the brain,  Organization for Human Brain Mapping, 2017
  • Vikash Gupta, Marc Harrison, Gautam Prasad, Paul Thompson, Multimodal analysis of Alzheimers disease using diffusion and anatomic MRI, Organization for Human Brain Mapping, 2016


Invited Talks
  • Real-World Applications and examples of AI in Medical Imaging, Guest Lecture at Applied Machine Learning Course @ Northwestern University, July 2019
  • Developing a coordinate system for the brain and classification of white matter fibers: A Deep Learning Approach, at Children’s Hospital Los Angeles, April 2017. 
  • Diffusion tensor imaging of the brain: Towards quantitative clinical tools, at IBM Medical Sieve Team, San Jose, December 2016. 
  • Statistical Analysis of diffusion tensor images for understanding HIV effects on white matter tracts, at Deutsches Zentrum fr Neurodegenerative Erkrankungen (German Center for Neurodegenerative diseases), October, 2014. 
  • Towards Higher Resolution Analysis of Clinical Brain Diffusion Images. 1st International Symposium on Deep Brain Connectomics, 2012 Clermont-Ferrand, France.