Publications

Journal Articles

• Freitas, A.T., Calhau, C., Antunes, G. et al. Vitamin D-related polymorphisms and vitamin D levels as risk biomarkers of COVID-19 disease severity. Sci Rep 11, 20837 (2021). https://doi.org/10.1038/s41598-021-99952-z

• Caetano, A., Pombinho, J., Antunes, G., Granjo, J., Borbinha, J., Silva, M. M. 2016. Representation and analysis of enterprise models with semantic techniques: an application to ArchiMate, e3value and Business Model Canvas. In Knowledge and Information Systems, Springer.

• Mayer, R., Antunes, G., Caetano, A., Bakhshandeh, M., Rauber, A., Borbinha, J. 2015. Using Ontologies to Capture the Semantics of a (Business) Process for Digital Preservation. In International Journal of Digital Libraries (IJDL), Vol.15, Issue 2, 2015.

• Antunes, G., Bahkshandeh, M., Mayer, R., Borbinha, J., Caetano, A. 2014. Using Ontologies for Enterprise Architecture Integration and Analysis. In Complex System Informatics and Modeling Quarterly, 2014, No 1, https://csimq-journals.rtu.lv/article/view/565.

• Barateiro, J., Antunes, G., Freitas, F., Borbinha, J. 2010. Designing Digital Preservation Solutions: A Risk Management-Based Approach. In International Journal of Digital Curation, Vol. 5, No. 1. ISSN: 1746-8256

Conferences and Workshops

[2016]

• Antunes, G., Caetano, A., Borbinha, J. 2016. An Application of Semantic Techniques to the Analysis of Enterprise Architecture Models. In the 49th Hawaii International Conference on System Sciences (HICSS-49), Kauai, Hawaii, USA, January 5-8, 2016.

[2015]

• Antunes, G., Caetano, A., Borbinha, J. 2015. Analysis of Enterprise Architecture Models with Description Logics Reasoning and SPARQL. In the 15th Conferência Associação Portuguesa de Sistemas de Informação (CAPSI 2015), Lisbon, Portugal, October 2 - 3, 2015.[presentation]

• Caetano, A., Antunes, G., Silva, M. M., Borbinha, J. 2015. Analysis of Federated Business Models: An Application to ArchiMate, BMC and e3value. In the 17th IEEE Conference on Business Informatics (CBI), Lisbon, Portugal, July 13 - 16, 2015.

• Antunes, G., Barateiro, J., Caetano, A., Borbinha, J. 2015. Enterprise Architecture Model Analysis: An Application of Ontologies. In the 23rd European Conference on Information Systems (ECIS), Munster, Germany, May 26 - 29, 2015.

[2014]

• Bakhshandeh, M., Kolany-Raiser, B., Antunes, G., Yankova, S., Caetano, A., and Borbinha, J. 2014. "A Digital Preservation-Legal Ontology". Proceedings of the International Conference on Knowledge Engineering and Ontology Development (KEOD 2014), Rome, Italy, 2014.

• Antunes, G., Caetano, A. Borbinha, J. 2014. Enterprise Architecture Model Analysis Using Description Logics. In the 1st International Workshop on Enterprise Model Analysis (EMA '14) at EDOC 2014, Ulm, Germany, September 2, 2014.

• Antunes, G., Bahkshandeh, M., Mayer, R., Borbinha, J., Caetano, A. 2014. Ontology-Based Enterprise Architecture Model Analysis. In the 29th Symposium on Applied Computing, Gyeongju, Korea, March 24 - 28, 2014.

[2013]

• Bachmann, A., Neumann, M. A., Miri, H., Barateiro, J., Antunes, G., Caetano, A. 2013. Preservation and Redeployment of Sensor Acquisition Processes from a Dam Safety Information System.In the 5th International Conference on Knowledge Management and Information Sharing (KMIS2013). Vilamoura, Algarve, Portugal, 19th - 22nd September 2013.

• Antunes, G., Bakhshandeh, M., Mayer, R., Borbinha, J., Caetano, A. 2013. Using Ontologies for Enterprise Architecture Analysis. In the 8th Trends in Enterprise Architecture Research Workshop (TEAR 2013). Vancouver, BC, 9th-13th September, 2013.

• Bakhshandeh, M., Antunes, G., Mayer, R., Borbinha, J., Caetano, A. 2013. A Modular Ontology for the Enterprise Architecture Domain. In the 8th International Workshop on Vocabularies, Ontologies and Rules for the Enterprise and Beyond (VORTE 2013). Vancouver, BC, 9th-13th September, 2013.

• Proença, D. Antunes, G., Miksa, T. 2013. On the Assessment of Preservability: Method and Application. In the 10th International Conference on Preservation of Digital Objects (iPRES 2013). Lisbon, Portugal, September 2 - 5, 2013.

• (Best Paper Award Recipient) Strodl, S., Mayer, R., Antunes, G., Draws, D., Rauber, A. 2013. Digital Preservation of a Process and its Application to e-Science Experiments. In the 10th International Conference on Preservation of Digital Objects (iPRES 2013). Lisbon, Portugal, September 2 - 5, 2013.

• Antunes, G., Vieira, R., Borbinha, J. 2013. Capabilities and Requirements Engineering: Research Challenges. In the 23rd Annual International Symposium of the International Council of Systems Engineering (INCOSE), 24-27 June, Philadelphia, PA, USA.

• Proença, D., Antunes, G., Borbinha, J., Caetano, A., Biffl, S., Winkler, D., Becker, C. 2013. Longevity as an Information Systems Design Concern. In CAISE Forum 2013, June 2013.

• Antunes, G., Caetano, A., Bakhshandeh, M., Mayer, R., Borbinha, J. 2013. Using Ontologies for Enterprise Architecture Model Alignment. In the 4th Workshop on Business and IT Alignment (BITA 2013), June 19 2013, Poznan, Poland.

• Proença, D., Becker, C., Kulovits, H., Vieira, R., Antunes, G., Silva, M. M., Borbinha, J. 2013. Evaluating a Process for Developing a Capability Maturity Model. In the 10th Enterprise Engineering track at ACM SAC 2013, March 2013, Coimbra, Portugal.

• Antunes, G., Borbinha, J. 2013. Capabilities in Systems Engineering: An Overview. In the International Conference on Exploring Service Science 1.3 (IESS1.3), 7-8 February 2013, Porto, Portugal.

[2012]

• Barateiro, J., Antunes, G., Borbinha, J. 2012. Manage Risks through the Enterprise Architecture. In the 45th Hawaii International International Conference on Systems Science (HICSS-45 2012), 4-7 January 2012, Grand Wailea, Maui, HI, USA.

• Mayer, R., Rauber, A., Neumann, M. A., Thomson, J., Antunes, G. 2012. Preserving Scientific Processes from Design to Publications. In Proceedings of the 2nd International Conference on Theory and Practice of Digital Libraries (TPDL 2012). Paphos, Cyprus, September 23 - 29, 2012.

• Neumann, M. A., Miri, H., Thomson, J., Antunes, G., Mayer, R., Beigl, M. 2012. Towards a Decision Support Architecture for Digital Preservation of Business Processes. In the 9th International Conference on Preservation of Digital Objects (iPRES 2012). Toronto, Canada, October 1 - 5, 2012.

• Antunes, G., Proença, D., Barateiro, J., Vieira, R., Borbinha, J., Becker, C. 2012. Assessing Digital Preservation Capabilities Using a Checklist Assessment Method. In the 9th International Conference on Preservation of Digital Objects (iPRES 2012). Toronto, Canada, October 1 - 5, 2012. download

• Strodl, S., Draws, D., Antunes, G., Rauber, A. 2012. Business Process Preservation - How to Capture, document & evaluate? In the 9th International Conference on Preservation of Digital Objects (iPRES 2012). Toronto, Canada, October 1 - 5, 2012.

[2011]

• Barateiro, J., Antunes, G., Borbinha, J. 2011. Long-term Security of Digital Information - Assessment through Risk Management and Enterprise Architecture. In Proceedings of International Conference on Computer as a Tool (EUROCONN 2011). IST Congress Center, Lisbon, Portugal, April 27-29, 2011.

• Becker, C., Antunes, G., Barateiro, J., Vieira, R., Borbinha, J. 2011. Modeling Digital Preservation Capabilities in Enterprise Architecture. In 12th Annual International Conference on Digital Government Research (dg.o 2011). University of Maryland, College Park MD, June 2011.

• Becker, C., Barateiro, J., Antunes, G., Vieira, R., Borbinha, J. 2011. On the relevance of Enterprise Architecture and IT Governance for Digital Preservation. In IFIP Tenth conference on electronic government (EGOV 2011). August 28 - September 2, 2011, Delft, Netherlands.

• Antunes, G., Barateiro, J., Becker, C., Vieira, R., Borbinha, J. 2011. Modeling Contextual Concerns in Enterprise Architecture. In Fifteenth IEEE International EDOC Conference. August 29 - September 2, 2011, Helsinki, Finland.

• Barateiro, J., Antunes, G., Manguinhas, H., Borbinha, J. 2011. Archiving Sensor Data: Applied to Dam Safety Information. In Environmental Information Management Conference (EIM 2011). September 28 - 29, 2011, Santa Barbara, CA, USA.

• Becker, C., Antunes, G., Barateiro, J., Vieira, R., Borbinha, J. 2011. Control Objectives for DP: Digital Preservation as an Integrated Part of IT Governance. In ASIST 2011 Annual Meeting (ASIST 2011). October 9 - 12, 2011, Singapore.

• Antunes, G., Pina, H. 2011. Using Grids Federations for Digital Preservation. In the 8th International Conference on Preservation of Digital Objects (iPRES 2011). November 1 - 4, 2011, Singapore.

• Becker, C., Antunes, G., Barateiro, J., Vieira, R. 2011. A Capability Model for Digital Preservation: Analysing Concerns, Drivers, Constraints, Capabilities and Maturities. In the 8th International Conference on Preservation of Digital Objects (iPRES 2011). November 1 - 4, 2011, Singapore.

[2010]

• Barateiro, J., Antunes, G., and Borbinha, J. 2010. Aligning OAIS with Enterprise Architecture. In 8th European Conference on Digital Archiving (April 28 - 30, Geneva, Switzerland).

• Antunes, G., Barateiro, J., Borbinha, J., Silvestre, D., and Freitas, F. 2010. Digital Preservation Based on Federations of Data Grids. In Proceedings of the 4th Iberian Grid Infrastructure Conference - Ibergrid 2010 (May 24-27, Braga, Portugal), Netbiblo, La Coruña, Spain, ISBN 978-84-9745-549-7.

• Antunes, G., Barateiro, J., Borbinha, J. 2010. A Reference Architecture for Digital Preservation. In the 7th International Conference on Preservation of Digital Objects (iPRES 2010), September 19 - 24, 2010, Vienna, Austria.

[2009]

• Barateiro, J., Borbinha, J., Antunes, G., and Freitas, F. 2009. Challenges on preserving scientific data with data grids. In Proceedings of the 1st ACM Workshop on Data Grids For Escience (Ischia, Italy, May 18 - 20, 2009). DaGreS '09. ACM, New York, NY, 17-22. DOI= htp://doi.acm.org/10.1145/1531786.1531790.

• Lee, S. J., Fox, E. A., Marchionini, G., Velacso, J., Antunes, G., and Borbinha, J. 2009. Virtual DL poster sessions in second life. In Proceedings of the 2009 Joint international Conference on Digital Libraries (Austin, TX, USA, June 15 - 19, 2009). JCDL '09. ACM, New York, NY, 473-474. DOI= http://doi.acm.org/10.1145/1555400.1555520.

• Antunes, G., Barateiro, J., Cabral, M., Borbinha, J., and Rodrigues, R. 2009. Preserving digital data in heterogeneous environments. In Proceedings of the 2009 Joint international Conference on Digital Libraries (Austin, TX, USA, June 15 - 19, 2009). JCDL '09. ACM, New York, NY, 345-348. DOI= http://doi.acm.org/10.1145/1555400.1555457.

• Barateiro, J., Antunes, G., and Borbinha, J. 2009. Addressing Digital Preservation: Proposals for New Perspectives. First International Workshop on Innovation in Digital Preservation. Austin, Texas, June 2009. http://cs.harding.edu/indp/schedule.html.

• Antunes, G., and Barateiro, J. 2009. Securing the iRODS Metadata Catalog for Digital Preservation. In Proceedings of the 13th European Conference on Research and Advanced Technology For Digital Libraries (Corfu, Greece, September 27 - October 2, 2009). Lecture Notes In Computer Science, vol. 5714. Springer-Verlag, Berlin, Heidelberg, 412-415. ISBN 978-3-642-04345-1. DOI 10.1007/978-3-642-04346-8_47.

• Barateiro, J., Antunes, G., Freitas, F., and Borbinha, B. 2009. Designing digital preservation solutions: a Risk Management based approach. In 5th International Digital Curation Conference "Moving to Multi-Scale Science: Managing Complexity and Diversity" (December 2 - 4, London, UK).

• Barateiro, J., Santos, J., Mata, J., Borbinha, J., and Antunes, G. 2009. Long-term data management and the safety of large civil engineering structures. In 5th IEEE International Conference on e-Science (December 7 - 9, Oxford, UK)

[2008]

• Barateiro, J., Antunes, G., Cabral, M., Borbinha, J., and Rodrigues, R. 2008. Digital Preservation of Scientific Data. In Proceedings of the 12th European Conference on Research and Advanced Technology For Digital Libraries (Aarhus, Denmark, September 14 - 19, 2008). B. Christensen-Dalsgaard, D. Castelli, B. Ammitzbøll Jurik, and J. Lippincott, Eds. Lecture Notes In Computer Science, vol. 5173. Springer-Verlag, Berlin, Heidelberg, 388-391. ISBN 978-3-540-87598-7. DOI 10.1007/978-3-540-87599-4_41.

• (Best Paper Award Recipient) Barateiro, J., Antunes, G., Cabral, M., Borbinha, J., and Rodrigues, R. 2008. Using a Grid for Digital Preservation. In Proceedings of the 11th International Conference on Asian Digital Libraries (Bali, Indonesia, December 2-5, 2008). G. Buchanan, M. Masoodian, S. Cunningham, Eds. Lecture Notes in Computer Science, vol. 5362. Springer-Verlag, Berlin, Heidelberg, 225-235. ISBN 978-3-540-89532-9. DOI 10.1007/978-3-540-89533-6_23

Technical Reports

• Antunes, G. 2012. Engineering Context Aware Socio-Technical Systems through Capabilities. INESC-ID Tec. Rep. 18/2012, BII, Apr 2012.

Project Deliverables and Reports

[Project SHAMAN - http://shaman-ip.eu/]

• Antunes, G., Barateiro, J., Becker, C., Borbinha, J., Proença, D., Vieira, R. 2011. SHAMAN Reference Architecture, Version 3.0. https://shaman-ip.eu/shaman/sites/default/files/SHAMAN-REFERENCE%20ARCHITECTURE-Final%20Version_0.pdf.

• Antunes, G., Barateiro, J., Borbinha, J., Engel, F., Klas, C-P. 2011. D5.3 - SHAMAN Data Grid Implementation. SHAMAN Consortium, http://shaman-ip.eu/.

• Manguinhas, H., Antunes, G., Barateiro, J., Borbinha, J. 2011. D9.2 - Assessment of Data Format Description Language. SHAMAN Consortium, http://shaman-ip.eu/.

• Antunes, G., Barateiro, J., Borbinha, J., Pina, H., Edmundo, J. 2011. D13.1 - Experimental E-Science Prototype: Proof-of-concept Implementation of SHAMAN Data Grid for Scientific Data. SHAMAN Consortium, http://shaman-ip.eu/.

[Project TIMBUS - http://timbusproject.net/]

• Thomson, J., Trezentos, P., Romão, M., Teixeira, R., Palma, A., Schmidtke, H., Neumann, M. A., Antunes, G., Proença, D., Caetano, A., Nolan, M., Draws, D., Heinrich, G, Mayer, R., Redlich, D. 2012. D4.2: Dependency Models Iter. 1. TIMBUS Consortium, http://timbusproject.net/.

• Schmidtke, H., Neumann, M. A., Antunes, G., Thomson, J., Nolan, M., Heinrich, G., Helcheltjen, M., Molka, T., Mayer, R., Draws, D. 2012. D4.5: Relevant Contexts of Business Processes. TIMBUS Consortium, http://timbusproject.net/.

• Galushka, M., Thomson, J., Vieira, R., Antunes, G., Borbinha, J., Proença, D., Draws, D., Strodl, S. 2012. D5.2: Preservation Architecture. TIMBUS Consortium, http://timbusproject.net/.

• Antunes, G., Proença, D., Silva, A., Caetano, A., Borbinha, J., Barateiro, J., Hecheltjen, M., Kolany, B., Yankova, S. 2012. D8.1: Use Case Definition and Digital Preservation Requirements. TIMBUS Consortium, http://timbusproject.net/.

• Antunes, G., Bakhshandeh, M., Fernandes, D., Silva, A., Caetano, A., Borbinha, J., Borges, G., Gomes, J. D9.1: Use Case Definition and Digital Preservation Requirements. TIMBUS Consortium, http://timbusproject.net/.

• Galushka, M., Silva, V., Vieira, R., Antunes, G., Borbinha, J., Proença, D., Draws, D., Strodl, S. 2012. D5.5: Refined Preservation Architecture. TIMBUS Consortium, http://timbusproject.net/.

• Molka, T., Redlich, D., Gilani, W., Borges, G., Pina, J., Gomes, J., Antunes, G., Vieira, R., Hecheltjen, M., Yankova, S., Kolany, B. 2012. D9.2: Use-Case Specific Risks. TIMBUS Consortium, http://timbusproject.net/.

• Dappert, A., Antunes, G. 2013. D3.3: TIMBUS Dissemination/Standardisation Plan and Activities, Iteration 2. TIMBUS Consortium, http://timbusproject.net/.

• Antunes, G., Caetano, A., Bakhshandeh, M., Mayer, R., Miri, H., Galushka, M., Draws, D., Coutinho, C. 2013. D4.3: Dependency Models Iter. 2. TIMBUS Consortium, http://timbusproject.net/.

• Strodl, S., Hobel, K., Weigl, E., Miksa, T., Proll, S., Mayer, R., Winkler, S., Unterberger, M., Binder, J., Kolany, B., Hecheltjen, M., Yankova, S., Antunes, G., Vieira, R., Draws, D., Simon, D., Euteneuer, S. 2013. D4.6: Use Case Specific DP & Holistic Escrow. TIMBUS Consortium, http://timbusproject.net/.

• Antunes, G., Proença, D., Caetano, A., Borbinha, J., Miksa, T., Mayer, R., Proll, S., Strodl, S., Weigl, E., Kulovits, H. 2013. D7.3: Assessment of Digitally Preservable Technology - Principles and Method. TIMBUS Consortium, http://timbusproject.net/.

• Galushka, M., Kolany, B., Yankova, S., Antunes, G., Barateiro, J., Vieira, R. 2013. D9.3: Definition of an eHealth Business Process and Requirements Specification for Digital Preservation. TIMBUS Consortium, http://timbusproject.net/.

• Coutinho, C., Miksa, T., Mayer, R., Antunes, G., Marques, L., Kolany-Raiser, B., Yankova, S. 2013. D7.5: Digitally Preserving an Open Source System - Case Analysis. TIMBUS Consortium, http://timbusproject.net/.

• Vieira, R., Barateiro, J., Higgs, A., Silva, J., Antunes, G. 2013. D8.4: Digital Preservation of CAD/CAM Business Processes. TIMBUS Consortium, http://timbusproject.net/.

[Project BenchmarkDP - http://benchmark-dp.org/]

• Antunes, G., Kulmukhametov, A., Winkler, D., Caetano, A., Becker, C. 2013. Milestone 3.1 - Literature Analysis and Conceptual Framework. http://benchmark-dp.org/

Thesis

• Antunes, G. 2015. Enterprise Architecture Model Analysis: An Application of Ontologies to the Enterprise Architecture Domain, PhD Thesis, Instituto Superior Técnico.

• Antunes, G., 2008. GRITO: Utilização de clusters GRID para um sistema de preservação digital, Master Thesis, Instituto Superior Técnico.