My Lectures are for 3 CFU, and start in April; they go together with Pio d'Adamo's 3 CFU.
MSc program in Data Science and Scientific Computing. University of Trieste, Italy
24h, 12 lecture, 2 hours each. 50% theoretical lecture, 50% practical session (40’ each).
GitHub for the course: https://github.com/caravagn/GDA
Dr Giulio Caravagna, Cancer Data Science Laboratory.
Invited guest lecturers
Dr Riccardo Bergamin, University of Trieste
Dr Alex Graudenzi, CNR.
Dr Salvatore Milite, University of Trieste
Dr Daniele Ramazzotti, University of Milan-Bicocca.
Lectures program (draft)
Caravagna. Variant calling from bulk sequencing
Caravagna. Measuring aneuploidy from bulk sequencing
Caravagna. Integrated quality control of somatic calls
Bergamin. Population genetics for cancer
Caravagna. Tumour subclonal deconvolution
Ramazzotti. Somatic mutational signatures
Bergamin, Milite. Basics of Single-cell RNA analysis
Graudenzi. Longitudinal evolution from single cell
Milite. Count-based models for single-cell data
Caravagna. Evolutionary based stratifications
Caravagna. Population-level models