Publications

Sundar Raman S, Singam E. R. A, Michael B, Subramanian S, Wade R. C, Identification of an electrostatic Ruler Motif for sequence-specific Binding of collagenase to collagen, J. Phys. Chem B. 2016 120, 8580-8589 (Equal Contribution)

Sathish kumar M, Singam E. R. A., Balamurugan K. and Subramanian V. Influence of size and charge of gold nanocluster on complexation with siRNA: Molecular dynamics simulations study Phys. Chem. Chem. Phys., 2015, 17, 30307-30317 .

Singam E. R. A., Sandeep S, Raghava G. P. S., Subramanian V. AntiAngioPred: A server for prediction of anti-angiogenic peptides, PlosOne, 2015 DOI: 10.1371/journal.pone.0136990

Hemamalini A, Singam E. R. A, Sathish Kumar M, Subramanian V, Mohan Das T, Design and synthesis of sugar-triazole based uracil appended sugar-imine derivatives–an application in DNA binding studies, New Journal of Chemistry, 2015, 39, 4575-4582

Gopalakrishnan R, Singam E. R. A., Subramanian V. Interaction of collagen like peptides with gold nanosurface: A molecular dynamics investigation, Physical Chemistry Chemical Physics, 2015, 17, 5172-5186

Sathish Kumar M, Singam E. R. A, Vijaya Sundar J, Pedersen M. N, Arul Murugan N, Kongsted J, Ågren H, Subramanian V. Enhancement of internal motions of lysozyme through interaction with gold nanoclusters and its optical imaging. Journal of Physical Chemistry C, 2014 119 (1), pp 653–664

Jayaraman J,; Ganesh S.; Singam, E. R. A. Inhibition of insulin amyloid fibril formation by ferulic acid, a natural compound found in many vegetables and fruits, RSC Advances, 2014 107 (4), 62326-62336

Muvva, C.; Singam, E. R. A.; Raman, S. S.; Subramanian, V. Structure-based virtual screening of novel, high-affinity BRD4 inhibitors. Molecular Biosystems 2014, 10 (9), 2384-2397.

Velmurugan, P.; Singam, E. R. A.; Jonnalagadda, R. R.; Subramanian, V. Investigation on interaction of tannic acid with type I collagen and its effect on thermal, enzymatic, and conformational stability for tissue engineering applications. Biopolymers 2014, 101 (5), 471-483.

Singam, E. R. A.; Rajapandian, V.; Subramanian, V. Molecular dynamics simulation study on the interaction of collagen-like peptides with gelatinase-A (MMP-2). Biopolymers 2014, 101 (7), 779-794.

Kalva, S.; Singam, E. R. A.; Rajapandian, V.; Saleena, L. M.; Subramanian, V. Discovery of potent inhibitor for matrix metalloproteinase-9 by pharmacophore based modeling and dynamics simulation studies. Journal of Molecular Graphics & Modelling 2014, 49, 25-37.

Rajalakshmi, S.; Kiran, M. S.; Vaidyanathan, V. G.; Singam, E. R. A.; Subramaniam, V.; Nair, B. U. Investigation of nuclease, proteolytic and antiproliferative effects of copper(II) complexes of thiophenylmethanamine derivatives. European Journal of Medicinal Chemistry 2013, 70, 280-293.

Latha, R. S.; Vijayaraj, R.; Padmanabhan, J.; Singam, E. R. A.; Chitra, K.; Subramanian, V. 3D-QSAR studies on the biological activity of juvenile hormone mimetic compounds for Culex pipiens Larvae. Medicinal Chemistry Research 2013, 22 (12), 5948-5960.

Singam, E. R. A.; Balamurugan, K.; Gopalakrishnan, R.; Raman, S. S.; Subramanian, V.; Ramasami, T. Molecular dynamic simulation studies on the effect of one residue chain staggering on the structure and stability of heterotrimeric collagen-like peptides with interruption. Biopolymers 2012, 97 (11), 847-863.

Latha, R. S.; Vijayaraj, R.; Singam, E. R. A.; Chitra, K.; Subramanian, V. 3D-QSAR and docking studies on the HEPT derivatives of HIV-1 reverse transcriptase. Chemical Biology & Drug Design 2011, 78 (3), 418-426.

Gopalakrishnan, R.; Balamurugan, K.; Singam, E. R. A.; Sundaraman, S.; Subramanian, V. Adsorption of collagen onto single walled carbon nanotubes: a molecular dynamics investigation. Physical Chemistry Chemical Physics 2011, 13 (28), 13046-13057.

Balamurugan, K.; Singam, E. R. A.; Subramanian, V. Effect of curvature on the α-helix breaking tendency of carbon based nanomaterials. Journal of Physical Chemistry C 2011, 115 (18), 8886-8892. – published as cover article