- Okumus B, Baker CJ, Arias-Castro JC, Lai GC, Leoncini E, Bakshi S, Luro S, Landgraf D, Paulsson J. Single-cell microscopy of suspension cultures using a microfluidics-assisted cell screening platform. Nature Protocols; 13:170. Link
- Okumus B, Landgraf D, Lai GC, Bakshi S, Arias-Castro JC, Yildiz S, Huh D, Fernandez-Lopez R, Peterson CN, Toprak E, Karoui ME, Paulsson J. Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells. Nature communications; 7:12130. Link
- Bakshi S, Choi H, Mondal J, Weisshaar JC. The spatial biology of transcription and translation in rapidly growing Escherichia coli. Frontiers in Microbiology; 6:636 (2015). Link
- Bakshi S, Choi H, Mondal J, Weisshaar JC. Time-dependent effects of transcription-and translation-halting drugs on the spatial distributions of the Escherichia coli chromosome and ribosomes. Molecular Microbiology; 94 (4): 871-887 (2014). Link
- Bakshi S, Choi H, Rangarajan N, Barns KJ, Weisshaar JC. Non-perturbative Imaging of Nuceloid Morphology in Live Bacterial Cells during Antimicrobial Peptide Attack. Applied and Environmental Microbiology; 00989-14 (2014). Link
- Bakshi S, Dalrymple R, Li W, Choi H, Weisshaar JC. Partitioning of RNA Polymerase Activity in Live E. coli from Analysis of Single-molecule Di.usive Trajectories. Biophysical Journal; 105 (12): 2676-2686 (2013). Link (This article received a commentary by Dr. Stefan Klump: New and Notable: A Superresolution Census of RNA Polymerase. Biophysical Journal; 105 (12): 2613–2614 (2013). Link)
- Rangarajan N, Bakshi S, Weisshaar JC. Localized Permeabilization of E. coli Membranes by the Antimicrobial Peptide Cecropin A. Biochemistry; 52 (38):6584-6594 (2013). Link
- Eun Y-J, Kiekebusch D, Zhou M, Schlimpert S, Trivedi R, Bakshi S, Wahlig T, Zhong Z, Thanbichler M, Weibel D. Divin: A Small Molecule Inhibitor of Bacterial Divisome Assemblys. J. Am. Chem. Soc.; 135, 9768-9776 (2013). Link
- Bakshi S, Siryaporn A, Goulian M, Weisshaar JC. Superresolution Imaging of Ribosomes and RNA Polymerase in Live Escherichia coli Cells. Molecular Microbiology; 85(1): 21-38 (2012). Link. (This article received a commentary by Dr. Julie Biteen: Extending the tools of single‐molecule fluorescence imaging to problems in microbiology. Molecular Microbiology; 85(1): 1-4 (2012). Link)
- Bakshi S, Bratton BP., Weisshaar JC. Sub-diffraction-limit Study of Kaede Diffusion and Spatial distribution in Live Escherichia coli. Biophysical Journal; 101(10):2535-2544 (2011). Link