Please cite the Coleman, Sterling & Weiss paper on using Marvin if you dock against these subsets Citations for DOCK3.7.
Downloadable DB2 files:
http://autodude.docking.org/dude_e_db2/ Ligand & decoy files for the Auto-DUD-E test set. Please cite Coleman et al PLOS ONE 2013.
Several DB2 files are available from the Teach Discover Treat 2014 Challenges.
http://aaaa.docking.org/~rgc/tdt2014/tcams/ TCAMS database files
http://aaaa.docking.org/~rgc/tdt2014/frags/ eMolecules Fragments
http://aaaa.docking.org/~rgc/tdt2014/leads/ eMolecules Leads
Please cite Karpiak & Coleman: https://github.com/ryancoleman/tdt2014-part2 or https://github.com/joelkarpiak/tdt_part3, see more here: http://www.tdtproject.org/2014-tutorials.html