Referred Journals:
Yuan Yuan, Lei Guo, Lei Shen and Jun S. Liu (2007) Predicting gene expression from sequence: An re-examination. PLoS Comput Biol, 3(11):e243. pdf
Li Shen, Xiaogeng Feng, Yuan Yuan, et al. (2006) Selective promoter recognition by Chlamydial sigma_28 holoenzyme. Journal of Bacteriology, 188(21):7364-7377. pdf
Yuan Yuan, Xinglai Ji, Zhirong Sun and Yanda Li (2004) Application of Isomap in cluster analysis of gene expression data. Journal of Tsinghua University, 44(9):1286-1290.
Xinglai Ji, Yuan Yuan, Zhirong Sun and Yanda Li (2004) HMMGEP: clustering gene expression data using hidden Markov models. Bioinformatics, 20:1799-1800. (Joint first author)
Conferences and Workshops:
Selective Partially Augmented Naive Bayes with Model Averaging. Joint Statistical Meetings, 2008, Denver. (Oral presentation)
Predictive Modeling Approaches to Gene Regulation. Computational Biology and Bioinformatics Seminar at Broad Institute, 2007, Cambridge.
Mutation Detection in Exon Grouping Analysis. Joint Statistical Meetings, 2007, Salt Lake City. (Oral presentation)
Substitution Pattern in Human Positive Selection Genes. IPAM Sequence Analysis toward System Biology, 2006, Los Angeles. (Poster)
Application of Bayesian logistic regression on gene expression prediction. Joint Statistical Meetings, 2006, Seattle. (Oral presentation)
Clustering gene expression data based on Normalized Cuts algorithm. 2nd Beijing Joint Annual Meeting in Life Science, 2004, Beijing.
Working Papers:
Xiaodan Fan, Yuan Yuan and Jun S. Liu (2009) The EM algorithm and the rise of computational biology. (Invited by Statistical Science. In revision. Joint first author)
Yuan Yuan and Jun S. Liu (2009) Selective Pairwise Augmentation for Naive Bayes. (Submitted to The 9th IEEE International Conference on Data Mining (ICDM'09))
Alexander Miron, Alice S. Whittemore, Yuan Yuan, et al. Validation of Exon Grouping Analysis (EGAN) for Rapid, Sensitive and Inexpensive Analysis of BRCA1 and BRCA2. (Submitted)
Yuan Yuan and Jun S. Liu. Bayesian variable selection for naive Bayes classifier. (In preparation)
Yuan Yuan, Xin Lu, Alexander Miron and Jun S. Liu. A curve outlier detection method. (In preparation)