RESOLVE, An R tool for the inference of mutational signatures of cancer. 2024.
ASCETIC, An R tool for the inference of evolutionary signatures of cancer. 2023.
VERSO, An R tool for the inference of phylogenetic models of viral evolution. 2020.
LACE, An R tool for the inference of longitudinal models of cancer evolution. 2020.
cyTRON/JS, A Web Application for translational oncology. 2019.
cyTRON, A Cytoscape app for translational oncology. 2019.
CIMLR, An R and MATLAB tool to assess similarities from single-cell sequencing data. 2018.
SparseSignatures, An R tool to extract trinucleotides mutational signatures from genomic data. 2018.
SIMLR, An R and MATLAB tool to assess similarities from single-cell sequencing data. 2016.
OncoScore, An R tool to measure the association of genes to cancer based on literature. 2016.
TRONCO, An R tool for translational oncology. 2015.
Finger Killer. A mobile app for iOS and Android. 2013.