Running faster

Once you have a config file (weeded.files.txt), you can run CODGAS in parallel on:

1)multiple threads

2)multiple hosts

3)multiple threads on multiple hosts

This is done as follows:

python -mscoop SCOOP_OPTIONS -- CODGAS_SIR.py

refer to the SCOOP documentaion (http://scoop.readthedocs.io/en/latest/usage.html#how-to-launch-scoop-programs) for more information, but for example:

use 10 threads

python -mscoop -n10 -- CODGAS_SIR.py

run on host1 and host 2

python -mscoop --host host1 host2 -- CODGAS_SIR.py

NOTE: in some scoop/DEAP installations, a "dummy" hostname must be provided, e.g.

python3 -mscoop -n20 --host localhost -- CODGAS_SIR.py