Publications

Books

• Floreano, D. and Mattiussi, C. (2008) Bio-Inspired Artificial Intelligence: Theories, Methods, and Technologies. Cambridge, MA: MIT Press. Front matter with Table of Contents and Preface - Amazon preview - Book companion site (Google Scholar citations)
• Floreano, D. and Mattiussi, C. (2002) Manuale sulle Reti Neurali. Bologna: Il Mulino. - Indice - Liberatoria sui diritti d'autore - Versione per stampa e rilegatura a fascicoli in formato A4 (Google Scholar citations)

Journals

• Mattiussi, C. (2013) Can an engineer fix an immune system? — Rethinking theoretical biology . Acta Biotheoretica, 61 (2) 223-258. — doi:10.1007/s10441-013-9180-x (Google Scholar citations)
• Mattiussi, C., Dürr, P., Marbach, D. and Floreano, D. (2011) Beyond Graphs: A New Synthesis. [Also known as Existing and Missing Methods for the Automatic Synthesis and Reverse Engineering of Networks] Journal of Computational Science, 2 (2), pp. 165-177. doi:10.1016/j.jocs.2011.01.007 (Google Scholar citations)
• Dürr, P., Mattiussi, C. and Floreano, D. (2010) Genetic representation and evolvability of modular neural controllers. IEEE Computational Intelligence Magazine, 5 (3), pp. 10-19. doi:10.1109/MCI.2010.937319 (Google Scholar citations)
• Marbach D., Prill R.J., Schaffter T., Mattiussi C., Floreano D. and Stolovitzky G. (2010) Revealing strengths and weaknesses of methods for gene network inference. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 107 (14) pp. 6286-6291. doi:10.1073/pnas.0913357107 (Google Scholar citations)
• Dürr, P., Karlen, W., Guignard, J., Mattiussi, C. and Floreano, D. (2009) Evolutionary Selection of Features for Neural Sleep/Wake Discrimination. Journal of Artificial Evolution and Applications. Article ID 179680. doi:10.1155/2009/179680 (Google Scholar citations)
• Marbach, D., Schaffter, T., Mattiussi, C. and Floreano, D. (2009) Generating Realistic in silico Gene Networks for Performance Assessment of Reverse Engineering Methods. Journal of Computational Biology. 16 (2) pp. 229-239. doi:10.1089/cmb.2008.09TT (Google Scholar citations)
• Marbach, D., Mattiussi, C. and Floreano, D. (2009) Combining Multiple Results of a Reverse Engineering Algorithm: Application to the DREAM Five Gene Network Challenge. Annals of the New York Academy of Sciences, 1158, pp. 102-113. doi:10.1111/j.1749-6632.2008.03945.x (Google Scholar citations)
• Karlen, W., Mattiussi, C. and Floreano, D. (2009) Sleep and Wake Classification With ECG and Respiratory Effort Signals. IEEE Transactions on Biomedical Circuits and Systems. 3 (2), pp. 71-78. doi:10.1109/TBCAS.2008.2008817 (Google Scholar citations)
• Marbach, D., Mattiussi, C. and Floreano, D. (2009) Replaying the Evolutionary Tape: Biomimetic Reverse Engineering of Gene Networks. Annals of the New York Academy of Sciences, 1158, pp. 234-245. doi:10.1111/j.1749-6632.2008.03944.x (Google Scholar citations)
• Mattiussi, C., Marbach, D., Dürr, P. and Floreano, D. (2008) The Age of Analog Networks. AI Magazine, 29 (3) pp. 63-76. doi:10.1609/aimag.v29i3.2156 (Google Scholar citations)
• Floreano, D., Dürr, P. and Mattiussi, C. (2008) Neuroevolution: from architectures to learning. Evolutionary Intelligence, 1 (1) pp. 47-62. doi:10.1007/s12065-007-0002-4 (Google Scholar citations)
• Mattiussi, C. and Floreano, D. (2007) Analog Genetic Encoding for the Evolution of Circuits and Networks. IEEE Transactions on Evolutionary Computation, 11 (5) pp. 596--607. doi:10.1109/TEVC.2006.886801 (Google Scholar citations)
• Floreano, D., Epars, Y., Zufferey, J.-C. and Mattiussi, C. (2006) Evolution of Spiking Neural Circuits in Autonomous Mobile Robots. International Journal of Intelligent Systems, 21 (9) pp. 1005-1024. doi:10.1002/int.20173 (Google Scholar citations)
• Floreano, D., Suzuki, M. and Mattiussi, C. (2005) Active Vision and Receptive Field Development in Evolutionary Robots. Evolutionary Computation, 13 (4) pp. 527--544. doi:10.1162/106365605774666912 (Google Scholar citations)
• Mattiussi, C., Waibel, M. and Floreano, D. (2004) Measures of Diversity for Populations and Distances Between Individuals with Highly Reorganizable Genomes. Evolutionary Computation, 12(4) pp. 495--515. doi:10.1162/1063656043138923 (Google Scholar citations)
• Mattiussi, C. (2002) Review of: "Digital Biology: The Creation of Life Inside Computers and How It Will Affect Us" by Peter J. Bentley. Artificial Life, 8 pp. 379-382. doi:110.1162/106454602321202444
• Mattiussi, C. (2002) A Reference Discretization Strategy for the Numerical Solution of Physical Field Problems. Advances in Imaging and Electron Physics, 121 pp. 143-279. doi:10.1016/S1076-5670(02)80027-1 (Google Scholar citations)
• Mattiussi, C. (2001) The Geometry of Time-Stepping. Progress in Electromagnetics Research, 32 pp. 123-149. doi:10.2528/PIER00080105 (Google Scholar citations)
• Mattiussi, C. (2000) The Finite Volume, Finite Difference, and Finite Elements Methods as Numerical Methods for Physical Field Problems. Advances in Imaging and Electron Physics, 113 pp. 1-146. doi:10.1016/S1076-5670(00)80012-9 (See A Reference Discretization Strategy for the Numerical Solution of Physical Field Problems for an updated version of this paper) (Google Scholar citations)
• Mattiussi, C. (1997) An Analysis of Finite Volume, Finite Element, and Finite Difference Methods Using Some Concepts from Algebraic Topology. Journal of Computational Physics, 133 (2) pp. 289-309. doi:10.1006/jcph.1997.5656 (Google Scholar citations)

Conference Proceedings & Book Chapters

• Dürr, P., Mattiussi, C., Soltoggio, A. and Floreano, D. (2008) Evolvability of Neuromodulated Learning for Robots. Proceedings of the 2008 ECSIS Symposium on Learning and Adaptive Behavior in Robotic Systems, pp. 41-46. doi:10.1109/LAB-RS.2008.22 (Google Scholar citations)
• Karlen, W., Mattiussi, C. and Floreano, D. (2008) Improving Actigraph Sleep/Wake Classification with Cardio-Respiratory Signals. Engineering in Medicine and Biology Society, 2008. EMBS 2008. 30th Annual International Conference of the IEEE, pp. 5262 - 5265. doi:10.1109/IEMBS.2008.4650401 (Google Scholar citations)
• Soltoggio, A., Bullinaria, J.A., Mattiussi, C., Dürr, P. and Floreano, D. (2008) Evolutionary Advantages of Neuromodulated Plasticity in Dynamic, Reward-based Scenarios. Proceedings of the 11th International Conference on Artificial Life (Alife XI), pp. 569--576. (Google Scholar citations)
• Karlen, W., Mattiussi, C. and Floreano, D. (2007) Adaptive Sleep/Wake Classification Based on Cardiorespiratory Signals for Wearable Devices. Proceedings of the IEEE Biomedical Circuits and Systems Conference, BioCAS 2007, pp. 203-206. doi:10.1109/BIOCAS.2007.4463344 (Google Scholar citations)
• Marbach, D., Mattiussi, C. and Floreano, D. (2007) Bio-mimetic Evolutionary Reverse Engineering of Genetic Regulatory Networks. Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, Proceedings, 4447 pp. 155-165. doi:10.1007/978-3-540-71783-6_15 (Google Scholar citations)
• Mattiussi, C., Dürr, P. and Floreano, D. (2007) Center of Mass Encoding: A self-adaptive representation with adjustable redundancy for real-valued parameters. Proceedings of the Genetic and Evolutional Computation Conference, GECCO2007, University College, London, pp. 1304--1311. doi:10.1145/1276958.1277205 (Google Scholar citations)
• Soltoggio, A., Dürr, P., Mattiussi, C. and Floreano, D. (2007) Evolving Neuromodulatory Topologies for Reinforcement Learning-like Problems. Proceedings of the 2007 IEEE Congress on Evolutionary Computation, pp. 2471-2478. doi:10.1109/CEC.2007.4424781 (Google Scholar citations)
• Beyeler, A., Mattiussi, C., Zufferey, J.-C. and Floreano, D. (2006) Vision-based Altitude and Pitch Estimation for Ultra-light Indoor Aircraft. IEEE International Conference on Robotics and Automation (ICRA'06), pp. 2836-2841. doi:10.1109/ROBOT.2006.1642131 (Google Scholar citations)
• Dürr, P., Mattiussi, C. and Floreano, D. (2006) Neuroevolution with Analog Genetic Encoding. Proceedings of the 9th Conference on Parallel Problem Solving from Nature (PPSN IX), 9 pp. 671--680. doi:10.1007/11844297_68 (Google Scholar citations)
• Mattiussi, C. and Floreano, D. (2004) Evolution of Analog Networks using Local String Alignment on Highly Reorganizable Genomes. Proceedings of the NASA/DoD Conference on Evolvable Hardware (EH'2004), pp. 30-37. doi:10.1109/EH.2004.1310806 (Google Scholar citations)
• Mattiussi, C. and Floreano, D. (2004) Connecting Transistors and Proteins. Proceedings of the 9th International Conference on Artificial Life (Alife9), pp. 9-14. (Google Scholar citations)
• Floreano, D., Zufferey, J.-C. and Mattiussi, C. (2003) Evolving Spiking Neurons from Wheels to Wings. Dynamic Systems Approach for Embodiment and Sociality, 6 pp. 65-70. (Google Scholar citations)
• Roggen, D., Floreano, D. and Mattiussi, C. (2003) A Morphogenetic Evolutionary System: Phylogenesis of the POEtic Circuit. 5th International Conference on Evolvable Systems (ICES'2003), pp. 153-164. doi:10.1007/3-540-36553-2_14 (Google Scholar citations)
• Floreano, D. and Mattiussi, C. (2001) Evolution of Spiking Neural Controllers for Autonomous Vision-based Robots. in Evolutionary Robotics IV, Berlin : Springer-Verlag, 2001. doi:10.1007/3-540-45502-7_2 (Google Scholar citations)
• Mattiussi, C. (1998) Edge Elements and Cochain-Based Field Function Approximation. Proceedings of the 4th International Workshop on Electric and Magnetic Fields, EMF 1998 (Marseille, France, May 12-15, 1988), pp. 301-306. (Google Scholar citations)

Technical Reports

• Mattiussi, C. (2003) Viability Evolution: Elimination and Extinction in Evolutionary Computation. Technical report, Laboratory of Intelligent Systems, EPFL, Switzerland. (Google Scholar citations)

PhD Thesis

• Mattiussi, C. (2005) Evolutionary Synthesis of Analog Networks. Ph.D. Thesis n. 3199, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland. doi:10.5075/epfl-thesis-3199 (Google Scholar citations)

Patents

• Mattiussi, C. and Floreano, D. (2008) Method and Device for Evolving a Network using a genetic representation. US Patent 7,370,019 B2. (Google Scholar citations)