Refereed Journal
TROVE: A User-friendly Tool for Visualizing and Analyzing Cancer Hallmarks in Signaling Networks. Huey Eng Chua, Sourav S. Bhowmick, Jie Zheng. Bioinformatics, 34(2): 314-316, 2018. (PubMed)(Video)
Synergistic Target Combination Prediction From Curated Signaling Networks: Machine Learning Meets Systems Biology and Pharmacology. Huey Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg. Methods, 129:60-80 (Invited Paper), 2017. (Methods)
VISUAL: Simulation of Visual Subgraph Query Formulation To Enable Automated Performance Benchmarking. Sourav S. Bhowmick, Huey Eng Chua, Byron Choi, Curtis Dyreson. IEEE Transactions on Data and Knowledge Engineering (TKDE), 29(8): 1765-1778, 2017. (IEEE)
TENET: Topological Feature-based Target Characterization in Signaling Networks. Huey Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg, C. Forbes Dewey, Jr. Bioinfomatics, 31(20):3306-3314, 2015. (PubMed)
Computational Cell Fate Modelling for Discovery of Rewiring in Apoptotic Network for Enhanced Cancer Drug Sensitivity. Shital K. Mishra, Sourav S. Bhowmick, Huey-Eng Chua, Fan Zhang, Jie Zheng. BMC Systems Biology, 9:S4, 2015. (BMC Systems Biology)
Refereed Conference
Towards Plug-and-Play Visual Graph Query Interfaces: Data-driven Canned Pattern Selection for Large Networks. Zifeng Yuan, Huey Eng Chua, Sourav S. Bhowmick, Zekun Ye, Wook-Shin Han, Byron Choi. In the Proceedings of 47th International Conference on Very Large Data Bases (VLDB 2021). (PDF) (Video)
MIDAS: Towards Efficient and Effective Maintenance of Canned Patterns in Visual Graph Query Interfaces. Kai Huang, Huey Eng Chua, Sourav S. Bhowmick, Byron Choi, Shuigeng Zhou. In the Proceedings of 47th ACM SIGMOD International Conference on Management of Data (ACM SIGMOD 2021). (PDF)(Code)
LATTE: Visual Construction of Smart Contracts. Sean Tan, Sourav S. Bhowmick, Huey Eng Chua, Xiaokui Xiao In the Proceedings of 45th ACM SIGMOD International Conference on Management of Data (ACM SIGMOD 2020, Demo). (PDF)(Video)
AURORA: Data-driven Construction of Visual Graph Query Interfaces for Graph Databases. Sourav S. Bhowmick, Kai Huang, Huey Eng Chua, Zifeng Yuan, Byron Choi, Shuigeng Zhou. In the Proceedings of 45th ACM SIGMOD International Conference on Management of Data (ACM SIGMOD 2020, Demo). (PDF)(Video)
BOOMER: A Tool for Blending Visual P-Homomorphic Queries on Large Networks. Yinglong Song, Huey Eng Chua, Sourav S. Bhowmick, Byron Choi, Shuigeng Zhou. In the Proceedings of 45th ACM SIGMOD International Conference on Management of Data (ACM SIGMOD 2020, Demo). (PDF)(Video)
CATAPULT: Data-driven Selection of Canned Patterns for Efficient Visual Graph Query Formulation. Kai Huang, Huey Eng Chua, Sourav S. Bhowmick, Byron Choi, Shuigeng Zhou. In the Proceedings of 45th ACM SIGMOD International Conference on Management of Data (ACM SIGMOD 2019). (PDF)
BOOMER: Blending Visual Formulation and Processing of p-Homomorphic Queries on Large Networks. Yinglong Song, Huey Eng Chua, Sourav S. Bhowmick, Byron Choi, Shuigeng Zhou. In the Proceedings of 44th ACM SIGMOD International Conference on Management of Data (ACM SIGMOD 2018). (PDF)(Video)
TINTIN: Exploiting Target Features for Signaling Network Similarity Computation and Ranking. Huey Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg. ACM Conference on Bioinformatics, Computational Biology and Biomedicine 2017 (ACM BCB 2017), Boston, USA, August 2017. (PDF)
TENET: A Machine Learning-based System for Target Characterization in Signaling Networks. Huey Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg, C Forbes Dewey, Jr. IEEE Conference on Data Mining 2016 (IEEE ICDM 2016), Barcelona, Spain, December 2016. (PDF)
FacetsViewer: A Tool for Multi-faceted Decomposition of Complex Networks. Boon Siew Seah, Sourav S. Bhowmick, Huey Eng Chua, Mengxuan Chen, C Forbes Dewey, Jr. IEEE Conference on Data Mining 2016 (IEEE ICDM 2016), Barcelona, Spain, December 2016. (PDF)
TAPESTRY: Network-centric Target Prioritization in Disease-related Signaling Networks. Huey Eng Chua, Sourav S. Bhowmick, Zheng Jie, Lisa Tucker-Kellogg. ACM Conference on Bioinformatics, Computational Biology and Biomedicine 2016 (ACM BCB 2016), Seattle, WA, USA, October 2016. (PDF)
Predictive Modeling of Drug Effects on Signaling Pathways in Diverse Cancer Cell Lines. Shital K. Mishra, Sourav S. Bhowmick, Huey Eng Chua, Zheng Jie. ACM Conference on Bioinformatics, Computational Biology and Biomedicine 2016 (ACM BCB 2016), Seattle, WA, USA, October 2016. (PDF)
VISUAL: An HCI-inspired Simulator of Blending Visual Subgraph Query Construction and Processing. Sourav S. Bhowmick, Huey-Eng Chua, Benji Thian, Byron Choi, IEEE International Conference on Data Engineering (ICDE 2015), Seoul, South Korea, 2015. (PDF)(Video)
One Feature Doesnt Fit All: Characterizing Topological Features of Targets in Signaling Networks. Huey Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg. ACM Conference on Bioinformatics, Computational Biology and Biomedicine 2014 (ACM BCB 2014), Newport Beach, California, USA, September 2014. (PDF)
INGOT: Towards Network-driven in silico combination therapy. Sourav S. Bhowmick, Huey Eng Chua, Jie Zheng. IEEE Proceedings of 1st International Conference on Big Data and Smart Computing (BigComp 2014), Bangkok, Thailand, January 2014. (Invited Paper) (PDF)
STEROID: In Silico Hueristic Target Combination Identification for Disease-Related Signaling Networks. Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg, C. Forbes Dewey, Jr. ACM Conference on Bioinformatics, Computational Biology and Biomedicine 2012 (ACM BCB 2012), Orlando, USA, October 2012. (PDF)(Technical Report)
In Silico Identification of Endo16 Regulators in the Sea Urchin Endomesoderm Gene Regulatory Network. Huey-Eng Chua, Sourav S. Bhowmick, Qing Zhao, Lisa Tucker-Kellogg, C. Forbes Dewey, Jr., Hanry Yu. ACM SIGHIT International Health Informatics Symposium 2012 (ACM SIGHIT 2012), Miami, USA, January 2012. (PDF)
PANI: An Interactive Data-Driven Tool for Target Prioritization in Signaling Networks. Huey-Eng Chua, Sourav S. Bhowmick, Yingqi Wang, Lisa Tucker-Kellogg, C. Forbes Dewey, Jr., Hanry Yu. ACM SIGHIT International Health Informatics Symposium 2012 (ACM SIGHIT 2012), Miami, USA, January 2012. (PDF)(Video)
PANI: A Novel Algorithm for Fast Discovery of Putative Target Nodes in Signaling Networks. Huey-Eng Chua, Sourav S. Bhowmick, Qing Zhao, Lisa Tucker-Kellogg, C Forbes Dewey, Jr., Hanry Yu. ACM Conference on Bioinformatics, Computational Biology and Biomedicine 2011 (ACM BCB 2011), Chicago, USA, August 2011. (PDF)(Technical Report)