Thonnekottu D., and Chatterjee, D., "Probing the Modulation in Facilitated Diffusion Guided by DNA-Protein Interactions in Target Search Processes", Physical Chemistry Chemical Physics, 26, 20296 - 20309, 2024, doi: https://doi.org/10.1039/D4CP01580K
Thonnekottu D., and Chatterjee, D., "CRISPR–Cas9 Genome Interrogation: A Facilitated Subdiffusive Target Search Strategy", The Journal of Physical Chemistry B,124(16), 3271, 2020, doi: https://doi.org/10.1021/acs.jpcb.0c00086.
Chatterjee, D. and Vilgis, T.A., “Scaling Laws of Bottle-Brush Polymers in Dilute Solutions,” Macromolecular Theory and Simulations 25(6):518–523, 2016, doi:10.1002/mats.201600074.
Chatterjee, D., “pH dependent protein stability: A quantitative approach based on Kramer’s barrier escape,” Chemical Physics Letters 618:94–98, 2015, doi:10.1016/j.cplett.2014.11.002.
Chatterjee, D. and Cherayil, B.J., “Single-molecule thermodynamics: the heat distribution function of a charged particle in a static magnetic field,” Journal of Statistical Mechanics: Theory and Experiment 2011(03):P03010, 2011, doi:10.1088/1742-5468/2011/03/P03010.
Chatterjee, D. and Cherayil, B.J., “The stretching of single poly-ubiquitin molecules: Static versus dynamic disorder in the non-exponential kinetics of chain unfolding,” The Journal of Chemical Physics 134:165104, 2011.
Chatterjee, D. and Cherayil, B.J., “Subdiffusion as a model of transport through the nuclear pore complex,” The Journal of Chemical Physics 135:155101, 2011.
Chatterjee, D. and Cherayil, B.J., “Exact path-integral evaluation of the heat distribution function of a trapped Brownian oscillator,” Physical Review E 82(5):051104, 2010.
Chatterjee, D. and Cherayil, B.J., “Anomalous reaction-diffusion as a model of nonexponential DNA escape kinetics,” The Journal of Chemical Physics 132(2):025103, 2010, doi:10.1063/1.3290987.
Chatterjee, D. and Cherayil, B.J., “A Model of Anomalous Enzyme-Catalyzed Gel Degradation Kinetics,” The Journal of Physical Chemistry B 114(15):5190–5195, 2010.
Chatterjee, D. and Cherayil, B.J., “Brownian particles in stationary and moving traps: The mean and variance of the heat distribution function,” Physical Review E 80(1):011118, 2009.
Chaudhury, S., Chatterjee, D., and Cherayil, B.J., “Resolving a puzzle concerning fluctuation theorems for forced harmonic oscillators in non-Markovian heat baths,” Journal of Statistical Mechanics: Theory and Experiment 2008(10):P10006, 2008, doi:10.1088/1742-5468/2008/10/P10006.
Chaudhury, S., Chatterjee, D., and Cherayil, B.J., “The dynamics of single enzyme reactions: A reconsideration of Kramers’ model for colored noise processes,” The Journal of Chemical Physics 129:075104, 2008.
Chatterjee, D., Chaudhury, S., and Cherayil, B.J., “The dynamics of intermittent strand separation in double-stranded DNA,” The Journal of Chemical Physics 127:155104, 2007.