Software

Software:

• Catactor (python)

  • Github page

• reactIDR (Python)

  • Statistical structure classification from high-throughput RNA structural analysis

  • Github page

  • Wiki

• ParasoR (C++)

  • Genome-wide local RNA secondary structure prediction

  • Github page

  • Wiki

• seqLoGo (Go lang)

  • Sequence compressor to  construct a sequence logo

  • Github page

• GoMADScan (Go lang and go-gtk)

  • GUI word search (Modification associated database scanner)

  • Github page

Scripts and Snippets:

• L2 regression

https://github.com/carushi/LinearRegression-with-numpy

• Kmer shuffling using ushuffle module

https://github.com/carushi/ushffleFasta