About Me
Research Fields:
Bioinformatics
RNA secondary structure
Cancer
Sequence alignment
Biological statistics
Machine learning
Image informatics
Single-cell multi-omics analysis
Aging
Reprogramming and regenerative medicine
Career:
2022- Junior Associate Professor, Department of Life Science Frontiers,
Center for iPS Cell Research and Application (CiRA), Kyoto University, Japan.
2019- Computational postdoctoral fellow, Cold Spring Harbor Laboratory, USA.
2018 Visiting Scientist, Cold Spring Harbor Laboratory, USA.
2017- Collaborative research scientist, Machine Learning Group, Artificial Intelligence Research Center, AIST, Japan.
2017- Collaborative research scientist, Div. of Mol. Modif. and Cancer Biol., National Cancer Center, Japan.
2017- 2019 Postdoctoral fellow, JSPS (PD)
2017 Ph.D, Department of Computational Biology and Medical Sciences, the University of Tokyo, Japan.
2016 (winter) Visiting scholar, College of Medicine, University of Cincinnati. USA.
2016 Visiting trainee, Riken Center for Life Science Technology.
2014-2017 Research fellow, JSPS (DC1).
2014 Master of Science, Department of Computational Biology, the University of Tokyo, Japan.
2012 Bachelor of Science, Department of Bioinformatics and Systems Biology, the University of Tokyo, Japan.
Activity:
2023 東京大学大学院新領域創成科学研究科メディカル情報生命専攻入学ガイダンスキャリアセミナー（Apr. 4th）
2023 第32回CiRAカフェ〜ズレも積もれば発見となる～コンピュータと見つける生物システムの謎～ (Jan. 28th)
2021 東京大学理学部 進学選択シンポジウム
202 IIBMP2021 program committee
2018 みらいぶプラス次世代を担う大学先端研究者によるスーパープレゼンテーション大学出張講義スペシャル「大学では学問しよう、研究しよう」 (Nov. 27th)
Talk video: https://www.milive-plus.net/gakumontabi/
2013-15 AYRCOB organizer
2018 Life science frontier meeting 2018 committee
2014-18 Japanese association of the bioinformatics young researchers committee (生命情報科学若手の会）
2017年度 代表
Membership:
2012-2017,2022- RNA学会
2018-2021 日本脳腫瘍学会
2017- 日本癌学会
2018- 日本バイオインフォマティクス学会
Teaching:
Lecture at Global Frontier in Life Science A (GFLS-A), Kyoto University. 2023.
Lecture at Regeneration Medicine and Organ Reconstruction Seminar, Graduate School of Medicine, Kyoto University. 2022.
Teaching assistant @ "情報生命科学基礎1" class, Department of Computational Biology, the University of Tokyo.
Contribution:
Links:
Biostars: https://www.biostars.org/u/22191/
Github: https://github.com/carushi
Skills:
Using C++, Python, Go, R, Matlab, Java, F#, etc.
Applied Information Technology Engineer, IPA, Japan
Personal:
Call me /ˈlisə/
Favorite: frog, shiba inu, cat, armadillo, and a variety of bizarre creatures
A noodle lover
Contact: see CiRA website