Here is the archived version of all of BioPortal and (also archived) atomic decompositions of BioPortal ontologies for Top, Bot, and BotTop* syntactic locality. Each archive contains a collection of folders, one for each ontology (omitted are syntactically incorrect ontologies or ontologies with more than 20K logical axioms). Each folder contains the partition (atoms) and some auxiliary files, namely, module_type.dat, graph.dat, labels.dat, and term_index.dat. They contain the type of locality, the AD graph structure (in DOT format), labels for atoms (sets of minimal seed signatures), and some extra indexing, respectively. Currently, only ADs for Bot-locality have labels.