Programme
Accepted submissions: Papers, Flash updates, Posters. Download the full handout
Schedule for 2013
Time: 8:30 a.m 6:00 pm
Room Location: Hall 5, Look for signs at the registration desk
Start
8:30
8:40
9:05
9:30
10:00
11:00
11:30
12:15
2:00
2:20
2:40
3:00
4:00
4:20
4:50
5:35
End
8:40
9:05
9:30
9:55
11:00
11:30
12:15
2:00
2:20
2:40
3:00
4:00
4:20
4:50
5:35
5:55
Chair
Nigam
Michel
Larisa
Philippe
Nigam
Authors and Title
Introduction and welcome
The Karyotype Ontology: a computational representation for human cytogenetic patterns. Jennifer Warrender and Phillip Lord
Lexical Analysis and Characterization of the OBOFoundry Ontologies. Manuel Quesada-Martínez, Jesualdo Tomás Fernández-Breis and Robert Stevens
Exomiser: improved exome prioritization of disease genes through cross species phenotype comparison. Peter Robinson, Sebastian Köhler, Anika Oellrich, Kai Wang, Chris Mungall, Suzanna E. Lewis, Sebastian Bauer, Dominik Seelow, Peter Krawitz, Christian Gilissen, Melissa Haendel and Damian Smedley
Coffee (10:15 - 10:45) + Posters [Central Lobby]
Three Flash updates, 10 min each
1. BioAssay Ontology (BAO): Modularization, Integration and Applications. Uma Vempati, Hande Kucuk, Saminda Abeyruwan, Ubbo Visser, Vance Lemmon, Ahsan Mir and Stephan Schürer
2. eXframe: A Semantic Web Platform for Genomics Experiments. Emily Merrill, Stephane Corlosquet, Paolo Ciccarese, Tim Clark and Sudeshna Das
3. Ovopub: Modular data publication with minimal provenance. Alison Callahan and Michel Dumontier
Keynote talk: Jyotishman Pathak – Semantic Web and Translational Medicine: Past, Present and Future
Lunch (Hall 2, tickets required) and Posters [Central lobby]
Zooma – A tool for automated ontology annotation. Tony Burdett, Simon Jupp, James Malone, Helen Parkinson, Eleanor Williams and Adam Faulconbridge
A Probabilistic Framework for Ontology-Based Annotation in Neuroimaging Literature. Chayan Chakrabarti, Thomas B. Jones, Jiawei F. Xu, George F. Luger, Angela R. Laird, Matthew D. Turner and Jessica A. Turner
Preserving sequence annotations across reference sequences. Zuotian Tatum, Andrew Gibson, Marco Roos, Peter E.M. Taschner, Mark Thompson, Erik A. Schultes and Jeroen F. J. Laros
Coffee break (3:30 - 4:00) + Posters [Central Lobby]
A Taxonomy for Immunologists. James A. Overton, Randi Vita, Jason A. Greenbaum, Heiko Dietze, Alessandro Sette and Bjoern Peters
Three Flash updates, 10 min each
4. Health Data Ontology Trunk: A middle-layer ontology for health- care. Ulf Schwarz, Luc Schneider, Emilio Sanfilippo, Holger Stenzhorn and Nikolina Koleva
5. Structured representation of scientific evidence using semantic web techniques – a biochemistry use case. Christian Bölling, Michael Weidlich and Hermann-Georg Holzhütter
6. Synthetic Biology Open Language Visual: an ontological use case. Jacqueline Quinn, Michal Galdzicki, Robert Sidney Cox, Jacob Beal, Kevin Clancy, Nathan Hillson and Larisa Soldatova
Keynote talk: Anita de Waard – Why research data management may save science
Closing remarks and Best paper award from the National Center for Biomedical Ontology