Software

A Majumdar, T Haldar (2020). R package MPGE: https://cran.r-project.org/web/packages/MPGE/index.html

A Majumdar, T Haldar, B Pasaniuc (2019). R package eGST: https://cran.r-project.org/web/packages/eGST/index.html

A Majumdar, T Haldar, JS Witte (2018). R package CPBayes: https://cran.r-project.org/web/packages/CPBayes/index.html

The software DiPS implements a new method to estimate population structure. The following two zip files contain the software for implementing the method ''DiPS" introduced in our paper: "A Novel Bayesian Semi-Parametric Algorithm For Inferring Population Structure And Adjusting For Case-Control Association Tests" in Biometrics. The codes are written in C.

• The compressed file "DiPS_Biometrics.tar.gz" contains the software, source codes, documentation and an example datafile.

• The next compressed file "PLINK_to_DiPS.tar.gz" contains a software which can convert the data format of a genotype data file, that is in PLINK (LINKAGE) format, to the data format which is compatible with the software DiPS.

genepoly method: https://drive.google.com/file/d/1SVIJgg-AvGb_ZhcYYMx4G0dgzUGWA06H/view?usp=drive_link

Allelic tests for association with multiple phenotypes: allelic_tests.zip contains the R codes for implementing allele-level test for association with multiple phenotypes introduced in this paper: ''Semi-parametric allelic tests for mapping multiple phenotypes: Binomial regression and Mahalanobis distance'' published in Genetic Epidemiology.