Useful programs

Unit Converter

Plots digitizer

http://digitizer.sourceforge.net/

How to synchronize two folders (remotely or locally)

https://www.linux.com/learn/how-backup-files-linux-rsync-command-line

Virus scanners

VirusTotal

https://www.virustotal.com/

Software test

http://www.lo4d.com/

Online virus catchers

http://mashable.com/2008/01/05/10-online-virus-malware-scanners/

https://epic.org/privacy/tools.html#other

http://www.cnet.com/news/five-great-firefox-privacy-add-ons/

http://www.techsupportalert.com/content/probably-best-free-security-list-world.htm

http://www.makeuseof.com/tag/disable-fake-location-firefox-internet-explorer-chrome/

Harley Sportster XL1200C Owner's Manual

Maintenance Scheduling

https://www.harley-davidson.com/en_US/Content/Pages/Owners/om/2005/en/SPORTSTER/file-14.comp#table-hdtopic000177-1

Maintenance and Lubrication

https://www.harley-davidson.com/en_US/Content/Pages/Owners/om/2005/en/SPORTSTER/file-7.comp

Specifications: 2005 Sportster Models

https://www.harley-davidson.com/en_US/Content/Pages/Owners/om/2005/en/SPORTSTER/file-3.comp

Specifications: 2005 Sportster Models

http://www.motorcycle.com/specs/harley-davidson/standard/2005/sportster-reg/1200-custom.html

Maintenance Sportster 2014 (better pictures)

https://www.harley-davidson.com/app-content/owners/om/2014/en/SPORTSTER/file-7.html

Riding tips

http://www.lazymotorbike.eu/tips/

DIY tips

https://www.louis.de/en/rund-ums-motorrad/schraubertipps

http://www.fiatpartswebstore.com

HPC Programming

HPCtoolkit

http://hpctoolkit.org/

ViTE Trace explorer.

http://vite.gforge.inria.fr/index.php

Tau Profiling and Tracing tools kit

http://www.cs.uoregon.edu/research/tau/home.php

Sniper is a next generation parallel, high-speed and accurate x86 simulator.

http://snipersim.org/w/The_Sniper_Multi-Core_Simulator

Gprof

Performance Analysis

http://sourceware.org/binutils/docs/gprof/

https://www.alcf.anl.gov/resource-guides/vesta-gprof-profiling-tools#using-gprof

Vampir

http://www.vampir.eu/

mpiP - An easy to use library that collects summary information on MPI activity and timings

http://www.alcf.anl.gov/user-guides/mpip

http://mpip.sourceforge.net/

PARTS Documentation

https://wiki.alcf.anl.gov/parts/index.php/Main_Page

Intel® Math Kernel Library Link Line Advisor

http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/

OpenMP in Intel

http://software.intel.com/sites/products/documentation/doclib/iss/2013/compiler/cpp-lin/GUID-0E85F327-A19E-410C-8203-0A89C8F32635.htm

An Overview of Programming for Intel® Xeon® Phi

http://software.intel.com/en-us/blogs/2012/11/14/an-overview-of-programming-for-intel-xeon-processors-and-intel-xeon-phi

Compiler Environment Variables

https://software.intel.com/sites/products/documentation/doclib/iss/2013/compiler/cpp-lin/GUID-E1EC94AE-A13D-463E-B3C3-6D7A7205F5A1.htm

What is code modernization

https://software.intel.com/en-us/articles/what-is-code-modernization

Best Practice Guide Intel Xeon Phi v1.1

http://www.prace-ri.eu/best-practice-guide-intel-xeon-phi-html/#offload-simple-example

https://www.nersc.gov/users/computational-systems/edison/programming/using-openmp/openmp-resources/

Git Manual

http://gitref.org/basic/

http://www.yolinux.com/TUTORIALS/LinuxTutorialMixingFortranAndC.html

https://www.nsc.liu.se/~boein/f77to90/a3.html#section0

http://www.parashift.com/c++-faq-lite/mixing-c-and-cpp.html

http://www.wpi.edu/Academics/CCC/Unix/Docs/ifc/f_ug/mix_callp.htm

http://www.phys.ufl.edu/~coldwell/Progdet/Mixing%20FORTRAN%20and%20C.htm

http://www.nag.com/nagware/NP/r52_doc/iso_c_binding.html

http://www.hpc.cineca.it/content/fft-solution-1

PDF Editors and Readers

PDF editor (works with Wine, no pain)

http://www.docu-track.com/

Skim PDF editor and reader for MAC

http://skim-app.sourceforge.net/

PaperCorp

This program converts PDF documents such as articles, and technical papers into a GIF sequence so as to be readable on a small screen of e-book devices.

http://jupiter.kaist.ac.kr/~taesoo/projects/paperCrop/index_eng.html

http://code.google.com/p/papercrop/

PDF Diff - highlights differences in PDF versions

http://www.qtrac.eu/diffpdf.html

Convert PDF to more friendly format for ebook readers

http://www.willus.com/k2pdfopt/

Merge/Split/Mix/Reorder/Rotate PDFs

http://www.pdfsam.org

PDF notes &links

http://www.delicious.com/ericblue76/pdf

PDF Tools For Attorneys

http://www.michaeltracylaw.com/attorney-tools.html

Using Acrobat command line

http://www.sathyasai.org/songs/sheetmusic/Print%20Instructions.htm

Insert OCRed text and annotations (manual method)

http://www.ub-filosofie.ro/~solcan/wt/gnu/d/hdjv.html

Share PPT

http://www.slideshare.net/

PPT to PDF

http://smallpdf.com/ppt-to-pdf

Latex

http://en.wikibooks.org/wiki/LaTeX/

VIM tips

https://realpython.com/blog/python/vim-and-python-a-match-made-in-heaven/

Nice blog

http://ex-ample.blogspot.com/search/label/HTML5

VirtualBox Run a virtual machine over any OS

http://www.virtualbox.org

The stylish way of giving presentations

http://impressive.sourceforge.net

GAR2PED, a Gaussian 94 output postprocessing utility

compiling

Scientific Computing {

Maxima, a Computer Algebra System

http://maxima.sourceforge.net/

Euler Math Toolbox,

http://euler.rene-grothmann.de/index.html

dfauto (Maple V (version 5), Bourne Shell, Fortran, LaTeX, 1571 lines).

Automatic code generation in density functional theory. R. Strange, F.R. Manby, P.J. Knowles. Distribution format: gzip file. 136(2001)310

http://www.mpipks-dresden.mpg.de/publ/zeitschriftenverz/cpc/Volume_10/index.html

Computational Chemistry links

http://ravel.phc.uni-kiel.de/links/programs.html

http://www.claessen.net/chemistry/soft_en.html

http://www.netsci.org/Resources/Software/Modeling/QM/

http://www.ru.j-npcs.org/chemistry/linux4chemistry.htm

Compiling Molden in Ubuntu

Compiling Dalton in Ubuntu

http://daltonprogram.org/forum/viewtopic.php?f=8&t=195

Software For Mac

Anti-RSI / Ergonomic software

http://tech.inhelsinki.nl/antirsi/

Inerzia Timer / Chronometer and timer

http://sparkle.andymatuschak.org/

Mac reads Ext2/ext3 system files

http://code.google.com/p/macfuse/

(to give add read/write permissions to the mounted filesys change in /System/Library/Filesystems/fuse-ext2.fs/fuse-ext2.util

search for the 'function Mount()" change OPTIONS="auto_xattr,defer_permissions,rw+"

)

A resource for chemists using Apple Macintosh computers

http://www.macinchem.org/

Screen linux command

http://magazine.redhat.com/2007/09/27/a-guide-to-gnu-screen/

http://www.linux.com/learn/tutorials/285795-taking-command-of-the-terminal-with-gnu-screen-

Faster DNS

http://code.google.com/intl/es/speed/public-dns/index.html

GPK Key physical stored

https://help.ubuntu.com/community/GPGKeyOnUSBDrive

Loggin Linux w/ USB stick

http://ubuntuforums.org/showthread.php?t=17571

Encryption of USB

http://www.simplehelp.net/2008/11/12/encrypting-a-filesystem-with-truecrypt-on-ubuntu/

http://www.sandisk.com/misc/secure-access

Encrypted File systems

https://help.ubuntu.com/community/EncryptedFilesystems

Encrypted home

https://help.ubuntu.com/community/EncryptedHome

Password Managers

http://passwordsafe.sourceforge.net

SSH Contromaster

http://home.fnal.gov/~mzs/tips/unix/ssh/

http://www.revsys.com/writings/quicktips/ssh-faster-connections.html

Bash Shell Maths

http://tldp.org/LDP/abs/html/mathc.html

QR generator

Sample "holaa" (150 x150 px)

https://chart.googleapis.com/chart?chs=150x150&cht=qr&chl=hola

bookstores

http://www.biblio.com/

http://www.abebooks.com

http://www.alibris.com

http://www.amazon.com

How to Design Programs, Second Edition

http://www.ccs.neu.edu/home/matthias/HtDP2e/index.html

Structure and Interpretation of Computer Programs (Abelson & Sussman)

http://mitpress.mit.edu/sicp/full-text/book/book.html

http://norvig.com/21-days.html

urlshortener

http://goo.gl

safeweb.norton.com

http://www.mozilla.org/en-US/plugincheck/

http://blog.mozilla.com/security/2010/05/11/plugin-check-for-everyone/

Physical Constants

http://web.utk.edu/~rcompton/constants

vim

http://www.ee.pw.edu.pl/~pileckip/aix/vi_del_lines.htm

Advanced vim

http://www.yolinux.com/TUTORIALS/LinuxTutorialAdvanced_vi.html

Console in vim

http://www.vim.org/scripts/script.php?script_id=2771

Auto complete HTML code

:set omnifunc=htmlcomplete#CompleteTags

autocmd FileType html set omnifunc=htmlcomplete#CompleteTags in .vmrc

To use the feature press Ctrl + x followed by Ctrl + o keys while writing HTML syntaxes.

VIM smart indent

https://www.cs.oberlin.edu/~kuperman/help/vim/indenting.html

Python{

http://matplotlib.sourceforge.net/

http://sourceforge.net/apps/mediawiki/cclib/index.php

zlib issue http://www.python-forum.org/pythonforum/viewtopic.php?f=16&t=6847

http://pypi.python.org/pypi/setuptools for pyquante

}

Clean HTML - html2txt

sed -n '/^$/!{s/<[^>]*>//g;p;}'

Mathematica Tips

http://blog.wolfram.com/2012/10/05/automating-xkcd-diagrams-transforming-serious-to-funny/

Github tips

http://stackoverflow.com/questions/448919/how-can-i-remove-a-commit-on-github

On undoing, fixing, or removing commits in git

http://sethrobertson.github.io/GitFixUm/fixup.html#remove_last