Search this site
Embedded Files
Skip to main content
Skip to navigation
Workflow
Home
Literature
Software
MCMC Software Stack
Model Structure
Workflow
Home
Literature
Software
MCMC Software Stack
Model Structure
More
Home
Literature
Software
MCMC Software Stack
Model Structure
Software & Resources
Software
Our Internal Software Projects
Markov chain Monte Carlo for use on clusters (
MPI
and
OpenMP
):
MCMC_CLIB
.
ABC uncertainty quantification:
UQSA
.
R
script to convert
SBtab
files to
vfgen
:
SBtabVFGEN
.
Other Parameter Estimation Packages
PESTO, parameter estimation toolbox:
For matlab:
ICB-DCM/PESTO
.
For Python:
ICB-DCM/pyPESTO
PyABC:
ICB-DCM
/
pyABC
writing and Editing of sbml models
Copasi
, a GUI Software that supports
sbml
SimBiology
, a matlab toolbox to create models and export to
sbml
SBToolbox2
, another matlab toolbox for systems biology
IQM Tools
, next version of SBToolbox2
Visualisation
iVUN
, a systems biology network visualisation tool
Web-based tools
SBtab
, an extensible table format that can be converted into
sbml
online
Report abuse
Report abuse