Software
Motion-triggerd average
Screening of molecular activities by velocity patterns at cell edges
Kunida et al., Decoding cellular deformation from pseudo-simultaneously observed Rho GTPase activities, Cell Reports, 42, 2, 2023.
BQuant
Estimation of microtubule thickness and number of microtubules from line scans of microtubule cross-sectional images
Wong JH, et al., Basic proline-rich protein-mediated microtubules are essential for lobe growth and flattened cell geometry, Plant Physiology, 2019.
Bayesian traction force estimation
Estimating cell-generated forces by applying prior knowledge of cell shape to traction force microscopic bead displacement
Fujikawa R, et al., Bayesian traction force estimation using cell boundary-dependent force priors, Biophyscal Journal, 2023.
Neuronal polarization
A quantitative mechano-model that simulates the process of neuronal polarization, in which a neuron extends only one neurite long enough to become polarized
Toriyama M, et al., A Diffusion-based neurite length sensing mechanism involved in neuronal symmetry-breaking, Mol. Syst. Biol., 6:394, 2010.