Publications
Publications
Lee, K. C., Chae, H., Xu, S., Lee, K., Horstmeyer, R., Lee, S. A., & Hong, B. W. (2024). Anisotropic regularization for sparsely sampled and noise-robust Fourier ptychography. Optics Express, 32(14), 25343-25361.
Lee, K., Lee, K. C., Jung, J., Chae, H., & Lee, S. A. (2024). High-resolution display screen as programmable illumination for Fourier ptychography. Optics and Lasers in Engineering, 177, 108121.
Zhou, K. C., Harfouche, M., Zheng, M., Jönsson, J., Lee, K. C., Kim, K., Appel, R., Reamey, P., Doman, T., Saliu, V., Horstmeyer, G., Lee, S. A., & Horstmeyer, R. (2024). Computational 3D topographic microscopy from terabytes of data per sample. Journal of Big Data, 11(1), 62.
Lee, Y., Byun, S., Yi, C., Jung, J., & Lee, S. A. (2024). Rolling shutter speckle plethysmography for quantitative cardiovascular monitoring. Biomedical Optics Express, 15(3), 1540-1552.
Xu, S., Yang, X., Ritter, P., Dai, X., Lee, K. C., Kreiss, L., Zhou, K. C., Kim, K., Chaware, A., Neff, J., Glass, C., Lee, S. A., Friedrich, O., & Horstmeyer, R. (2024). Tensorial tomographic Fourier ptychography with applications to muscle tissue imaging. Advanced Photonics, 6(2), 026004-026004.
Yi, C., Byun, S., Lee, Y., & Lee, S. A. (2024). Improvements and validation of spatiotemporal speckle correlation model for rolling shutter speckle imaging. Biomedical Optics Express, 15(2), 1253-1267.
Chang, S., Kim, S., Lee, D., Lee, S. A., Chung, J., Kwon, S., & Kim, J. (2023). Laser-assisted recovery of on-chip phage viral DNA for phage fluorescence immunoassay microchip. BioChip Journal, 17(4), 431-438.
Kreiss, L., Jiang, S., Li, X., Xu, S., Zhou, K. C., Lee, K. C., Mühlberg, A., Kim, K., Chaware, A., Ando, M., Barisoni, L., Lee, S. A., Zheng, G., Lafata, K. J., Friedrich, O., & Horstmeyer, R. (2023). Digital staining in optical microscopy using deep learning - a review. PhotoniX, 4, 34.
Kim, T., Lee, K. C., Baek, N., Chae, H., & Lee, S. A. (2023). Aperture-encoded snapshot hyperspectral imaging with a lensless camera. APL Photonics, 8, 066109.
Lee, K. C., Bae, J., Baek, N., Jung, J., Park, W., & Lee, S. A. (2023). Design and single-shot fabrication of lensless cameras with arbitrary point spread functions. Optica, 10(1), 72-80. (Cover Article)
Yi, C., Jung, J., Im, J., Lee, K. C., Chung, E., & Lee, S. A. (2022). Single-shot temporal speckle correlation imaging using rolling shutter image sensors. Optica, 9(11), 1227-1237.
Baek, N., Lee, Y., Kim, T., Jung, J., & Lee, S. A. (2022). Lensless polarization camera for single-shot full-Stokes imaging. APL Photonics, 7, 116107.
Lee, K., Jang, Y. K., Jung, J., Kim, D. H., Lee, H. J., & Lee, S. A. (2022, October). EuglPollock: Rethinking Interspecies Collaboration through Art Making. In Proceedings of the 30th ACM International Conference on Multimedia (pp. 1077-1084).
Lee, S. A., & Riedel-Kruse, I. H. (2022). Micro-HBI: Human-Biology Interaction With Living Cells, Viruses, and Molecules, Frontiers in Computer Science, 4, 849887.
Lee, Y., Chae, H., Lee, K. C., Baek, N., Kim, T., Jung, J., & Lee, S. A. (2022). Fabrication of Integrated Lensless Cameras via UV-Imprint Lithography, IEEE Photonics Journal, 14(2), 1-8.
Lee, H., Kim, J., Kim, J., Jeon, P., Lee, S. A., & Kim, D. (2021). Noniterative sub-pixel shifting super-resolution lensless digital holography, Optics Express, 29(19), 29996-30006.
Kim, J., Lee, H., Im, S., Lee, S. A., Kim, D., & Toh, K. A. (2021). Machine learning-based leaky momentum prediction of plasmonic random nanosubstrate. Optics Express, 29(19), 30625-30636.
Yi, C., Bae, J., Baek, N., Jung, J., Hur, S., Lee, H. J., & Lee, S. A. (2021). ReMember: Using Biosignals to Recall Memories of Companion Animals. Proceedings of the ACM on Computer Graphics and Interactive Techniques, 4(2), 1-7. (SIGGRAPH '21)
Kim, R., Pataranutaporn, P., Forman, J., Lee, S. A., Riedel-Kruse, I. H., Alistar, M., ... & Poslad, S. (2021, May). Microbe-HCI: Introduction and Directions for Growth. In Extended Abstracts of the 2021 CHI Conference on Human Factors in Computing Systems (pp. 1-4). (CHI EA '21)
Lee, K. C., Lee, K., Jung, J., Lee, S. H., Kim, D., & Lee, S. A. (2021). A Smartphone-Based Fourier Ptychographic Microscope Using the Display Screen for Illumination. ACS Photonics, 8(5), 1307-1315.
Yoo, H., Lee, H., Rhee, W. J., Moon, G., Lee, C., Lee, S. A., Shin, J. S. & Kim, D. (2021). Disordered Nanocomposite Islands for Nanospeckle Illumination Microscopy in Wide‐Field Super‐Resolution Imaging. Advanced Optical Materials, 2100211.
Lee, H., Kang, K., Mochizuki, K., Lee, C., Toh, K. A., Lee, S. A., Fujita, K. & Kim, D., (2020). Surface Plasmon Localization-Based Super-resolved Raman Microscopy. Nano Letters, 20 (12), 8951-8958.
Bae, D., Jung, J., Baek, N., & Lee, S. A. (2020, November). Lensless Imaging with an End-to-End Deep Neural Network. In 2020 IEEE International Conference on Consumer Electronics-Asia (ICCE-Asia) (pp. 1-5). IEEE.
Lee, K., Jung, J., & Lee, S. A. (2020, April). MicroAquarium: An Immersive and Interactive Installation with Living Microorganisms. In Extended Abstracts of the 2020 CHI Conference on Human Factors in Computing Systems (pp. 1-4).
Lam, A. T., Griffin, J., Loeun, M. A., Cira, N. J., Lee, S. A., & Riedel-Kruse, I. H. (2020, April). Pac-Euglena: A Living Cellular Pac-Man Meets Virtual Ghosts. In Proceedings of the 2020 CHI Conference on Human Factors in Computing Systems (pp. 1-13).
Lam, A. T., Ma, J., Barr, C., Lee, S. A., White, A. K., Yu, K., & Riedel-Kruse, I. H. (2019). First-hand, immersive full-body experiences with living cells through interactive museum exhibits. Nature Biotechnology, 37(10), 1238-1241.
Pre-group Publications
Lam, A. T., Samuel-Gama, K. G., Griffin, J., Loeun, M., Gerber, L. C., Hossain, Z., ... & Riedel-Kruse, I. H. (2017). Device and programming abstractions for spatiotemporal control of active micro-particle swarms. Lab on a Chip, 17(8), 1442-1451. (Inside Cover Article)
Kim, H., Gerber, L. C., Chiu, D., Lee, S. A., Cira, N. J., Xia, S. Y., & Riedel-Kruse, I. H. (2016). LudusScope: accessible interactive smartphone microscopy for life-science education. PloS one, 11(10), e0162602.
Lee, S. A., Bumbacher, E., Chung, A. M., Cira, N., Walker, B., Park, J. Y., ... & Riedel-Kruse, I. H. (2015, April). Trap it! A playful human-biology interaction for a museum installation. In Proceedings of the 33rd Annual ACM Conference on Human Factors in Computing Systems (CHI) (pp. 2593-2602).
Lee, S. A., Chung, A. M., Cira, N., & Riedel-Kruse, I. H. (2015, January). Tangible interactive microbiology for informal science education. In Proceedings of the Ninth International Conference on Tangible, Embedded, and Embodied Interaction (TEI) (pp. 273-280).
Lee, S. A., & Yang, C. (2014). A smartphone-based chip-scale microscope using ambient illumination. Lab on a Chip, 14(16), 3056-3063.
Lee, S. A., Erath, J., Zheng, G., Ou, X., Willems, P., Eichinger, D., Rodriguez, A., & Yang, C. (2014). Imaging and identification of waterborne parasites using a chip-scale microscope. PloS one, 9(2), e89712.
Jung, J. H., Han, C., Lee, S. A., Kim, J., & Yang, C. (2014). Microfluidic-integrated laser-controlled microactuators with on-chip microscopy imaging functionality. Lab on a Chip, 14(19), 3781-3789.
Lee, S. A., Ou, X., Lee, J. E., & Yang, C. (2013). Chip-scale fluorescence microscope based on a silo-filter complementary metal-oxide semiconductor image sensor. Optics letters, 38(11), 1817-1819.
Lee, S. A., Zheng, G., Mukherjee, N., & Yang, C. (2012). On-chip continuous monitoring of motile microorganisms on an ePetri platform. Lab on a Chip, 12(13), 2385-2390.
Lee, S. A., Leitao, R., Zheng, G., Yang, S., Rodriguez, A., & Yang, C. (2011). Color capable sub-pixel resolving optofluidic microscope and its application to blood cell imaging for malaria diagnosis. PloS one, 6(10), e26127.
Zheng, G., Lee, S. A., Antebi, Y., Elowitz, M. B., & Yang, C. (2011). The ePetri dish, an on-chip cell imaging platform based on subpixel perspective sweeping microscopy (SPSM). Proceedings of the National Academy of Sciences, 108(41), 16889-16894. (Featured in Nature Methods research highlights, MIT Technology Review)
Zheng, G.*, Lee, S. A.*, Yang, S.*, & Yang, C. (2010). Sub-pixel resolving optofluidic microscope for on-chip cell imaging. Lab on a Chip, 10(22), 3125-3129. (*equal contribution)
Chung, S. E., Lee, S. A., Kim, J., & Kwon, S. (2009). Optofluidic encapsulation and manipulation of silicon microchips using image processing based optofluidic maskless lithography and railed microfluidics. Lab on a Chip, 9(19), 2845-2850.
Lee, S. A., Chung, S. E., Park, W., Lee, S. H., & Kwon, S. (2009). Three-dimensional fabrication of heterogeneous microstructures using soft membrane deformation and optofluidic maskless lithography. Lab on a Chip, 9(12), 1670-1675. (Cover Article)
Chung, S. E., Park, W., Shin, S., Lee, S. A., & Kwon, S. (2008). Guided and fluidic self-assembly of microstructures using railed microfluidic channels. Nature materials, 7(7), 581-587. (Cover Article)
Patents
E Rephaeli, D Piponi, C Belthangady, SA Lee, Speckle contrast analysis using machine learning for visualizing flow, US Patent, US10776667B2
CH Wu, BM Rabkin, S Sinha, JD Perreault, C Belthangady, J Higbie, SA Lee, Light sheet imaging flow cytometer, US Patent Application, US20200182793A1
CM Santori, SA Lee, Lenslet based snapshot hyperspectral camera, US Patent, US10499020B1
S Sinha, SA Lee, Thin stackup for diffuse fluorescence system, US Patent, US10345239B1
SA Lee, C Belthangady, CM Santori, Non-mydriatic self-imaging fundus camera, US Patent, US10321822B1
S Kavusi, CM Santori, SA Lee, S Ettinger, Eye imaging methods and devices with reflection reduction, US Patent, US10285582B1
R Kramer, S Kavusi, E Glik, SA Lee, C Belthangady, Active Visual Alignment Stimuli In Fundus Photography, US Patent Application, 16/175,719
S Alla, J Perreault, V Acosta, SA Lee, Systems and methods for optode imaging, US Patent, 10159434B1
C Belthangady, F Kashif, SA Lee, T Troy, J Perreault, S Alla, Continuous monitoring of tumor hypoxia using near-infrared spectroscopy and tomography with a photonic mixer device, US Patent, 9907495B2
C Belthangady, SA Lee, JD Perreault, JSE Han, CH Wu, M Lee, Eye cytometer for continuous health monitoring, US Patent Application, 15/497,015
S Kwon, S Chung, SA Lee, J Jang, S Han, Image processing-based lithography system and method of coating target object, US Patent, 9856564B2
C Santori, S Sinha, CH Wu, J Higbie, SA Lee, Systems and Methods for 4-D Hyperspectral Imaging, US Patent, US10365218B2
G Zheng, C Yang, S Yang, SA Lee, Super resolution optofluidic microscopes for 2D and 3D imaging, US Patent 9743020
B Judkewitz, G Zheng, S Yang, SA Lee, S Pang, C Yang, YM Wang, Methods for rapid distinction between debris and growing cells, US Patent 9569664
G Zheng, S Yang, SA Lee, C Yang, Scanning projective lensless microscope system, US Patent 9426429
SA Lee, G Zheng, B Judkewitz, S Pang, C Yang, Light guided pixel configured for emissions detection and comprising a guide layer with a wavelength selective filter material and a light detector layer, US Patent, 9343494
G Zheng, S Yang, SA Lee, S Pang, C Yang , e-Petri dishes, devices, and systems having a light detector for sampling a sequence of sub-pixel shifted projection images, US Patent 9643184
S Kwon, JY Kim, W Park, HS Park, SA Lee, SE Chung, Fluidic channel system and method for fabricating fine structure, US Patent 8408892
S Kwon, SA Lee, SE Chung, W Park, Optofluidic lithography system, method of manufacturing two-layered microfluidic channel, and method of manufacturing three-dimensional microstructures, US Patent 8641404
Awards and Media Coverage
Stanford team makes biotechnology interactive with games and remote control labs, Stanford News
Wired petridish reveals real-time update, MIT Technology Review
A $1.50 Lensless microscope, MIT Technology Review