研究業績 (Achivements)

2023

• 2023
  Liu M, Kameoka H, Oda A, Maeda T, Yano K, Goto T, Soyano T, Kawaguchi M (2023) The effects of
  ERN1 on gene expression during early rhizobial infection in Lotus japonicus. Front Plant Sci 13:995589.

• Kobayashi Y, Shibata TF, Hirakawa H, Nishiyama T, Yamada A, Hasebe M, Shigenobu S, Kawaguchi M (2023) The genome of Lyophyllum shimejiprovides insight into the initial evolution of ectomycorrhizal fungal genomes. DNA Res 30:dsac053.

2022

• Goto T, Soyano T, Liu M, Mori T, Kawaguchi M (2022) Auxin methylation by IAMT1, duplicated in the legume lineage, promotes root nodule development in Lotus japonicus. Proc Natl Acad Sci USA 119, e2116549119.

• Tanaka S, Hashimoto K, Kobayashi Y, Yano K, Maeda T, Kameoka H, Ezawa T, Saito K, Akiyama K, Kawaguchi M (2022) Asymbiotic mass production of the arbuscular mycorrhizal fungus Rhizophagus　clarus. Commun Biol 5, 43.

• Hayahi-Tsugane M, Kawaguchi M (2022) Lotus japonicus HAR1 regulates root morphology locally and systemically under a moderate nitrate condition in the absence of rhizobia. Planta 255, 95.

• Kobayashi Y, Katsuren M, Hojo M, Wada S, Terashima Y, Kawaguchi M, Tokuda G, Kinjo K, Shigenobu S (2022) Taxonomic revision of Termitomycesspecies found in Ryukyu Archipelago, Japan, based on phylogenetic analyses with three loci. Mycoscience 63, 33-38.

• Gunji S, Kawade K, Tabeta H, Horiguchi G, Oikawa A, Asaoka M, Hirai MY, Tsukaya H, Ferjani A (2022) Tissue-targeted inorganic pyrophosphate hydrolysis in a fugu5 mutant reveals that excess inorganic pyrophosphate triggers developmental defects in a cell-autonomous manner. Front Plant Sci13, 945225.

• Kodama K, Rich MK, Yoda A, Shimazaki S, Xie X, Akiyama K, Mizuno Y, Komatsu A, Luo Y, Suzuki H, Kameoka H, Libourel C, Keller J, Sakakibara K, Nishiyama T, Nakagawa T, Mashiguchi K, Uchida K, Yoneyama K, Tanaka Y, Yamaguchi S, Shimamura M, Delaux P-M, Nomura T, Kyozuka J (2022) Nat Commun 3, 1-15.

• Misawa F, Ito M, Nosaki S, Nishida H, Watanabe M, Suzuki T, Miura K, Kawaguchi M, Suzaki T. (2022) Nitrate transport via NRT2.1 mediates NIN-LIKE PROTEIN-dependent suppression of root nodulation in Lotus japonicus. Plant Cell 34. 1844-1862.
  
  

2021

• Okuma, N. and Kawaguchi, M. (2021). Systemic Optimization of Legume Nodulation: A Shoot-Derived Regulator, miR2111. Front Plant Sci. 12, 682486.

• Nishida, H., Nosaki, S., Suzuki, T., Ito, M., Miyakawa, T., Nomoto, M., Tada, Y., Miura, K., Tanokura, M., Kawaguchi, M. and Suzaki, T. (2021). Different DNA-binding specificities of NLP and NIN transcription factors underlie nitrate-induced control of root nodulation. Plant Cell 33, 2340-2359.

• Aoki, T., Kawaguchi, M., Ismaizumi-Anraku, H., Ayabe, S. and Akashi, T. (2021). Mutants of Lotus japonicus deficient in flavonoid biosynthesis. J Plant Res. 134, 341-352.

• Soyano, T., Liu, M., Kawaguchi, M. and Hayashi, M. (2021). Leguminous nodule symbiosis involves recruitment of factors contributing to lateral root development. Curr Opin Plant Biol. 59, 102000.

• Akamatsu, A., Nagae, M., Nishimura, Y., Romero, Montero D., Ninomiya, S., Kojima, M., Takebayashi, Y., Sakakibara, H., Kawaguchi, M. and Takeda N. (2021). Endogenous gibberellins affect root nodule symbiosis via transcriptional regulation of NODULE INCEPTION in Lotus japonicus. Plant J. 105, 1507-1520.

2020

• Okuma, N., Soyano, T., Suzaki, T. and Kawaguchi, M. (2020). MIR2111-5 locus and shoot-accumulated mature miR2111 systemically enhance nodulation depending on HAR1 in Lotus japonicus. Nat Commun. 11, 5192.

• Sugiura, Y., Akiyama, R., Tanaka, S., Yano, K., Kameoka, H., Marui, S., Saito, M., Kawaguchi, M., Akiyama, K. and Saito, K. (2020). Myristate can be used as a carbon and energy source for the asymbiotic growth of arbuscular mycorrhizal fungi. Proc Natl Acad Sci U S A. 117, 5779-25788.

• Kawade, K., Horiguchi, G., Hirose, Y., Oikawa, A., Hirai, M.Y., Saito, K., Fujita, T. and Tsukaya, H. (2020). Metabolic control of gametophore shoot formation through arginine in the moss Physcomitrium patens. Cell Rep. 32, 08127.

• Nozaki, M., Kawade, K., Horiguchi, G. and Tsukaya, H. (2020). an3-mediated compensation Is dependent on a cell-autonomous mechanism in leaf epidermal tissue. Plant Cell Physiol. 61, 1181-1190.

• Tomoi, T., Kawade, K., Kitagawa, M., Sakata, Y., Tsukaya, H., and Fujita, T. (2020). Quantitative imaging reveals distinct contributions of SnRK2 and ABI3 in plasmodesmatal permeability in Physcomitrella patens. Plant Cell Physiol. 61, 942-956.

• Greetatorn, T., Hashimoto, S., Maeda, T., Fukudome, M., Piromyou, P., Teamtisong, K., Tittabutr, P., Boonkerd, N., Kawaguchi, M., Uchiumi, T. and Teaumroong, N. (2020). Mechanisms of rice endophytic bradyrhizobial cell differentiation and Its role in nitrogen fixation. Microbes Environ. 35 (3).

• Fukudome, M., Shimada, H., Uchi, N., Osuki, K.I., Ishizaki, H., Murakami, E., Kawaguchi, M. and Uchiumi, T. (2020). Reactive sulfur species interact with other signal molecules in root nodule symbiosis in Lotus japonicus. Antioxidants (Basel) 9, 145.

• Yoro, E., Suzaki, T. and Kawaguchi, M. (2020). CLE-HAR1 Systemic Signaling and NIN-Mediated Local signaling suppress the increased rhizobial infection in the daphne mutant in Lotus japonicus. Mol. Plant Microbe Interact. 33, 320-327.

• Nishida H, Ito M, Miura K, Kawaguchi, M. and Suzaki T. (2020). Autoregulation of nodulation pathway is dispensable for nitrate-induced control of rhizobial infection. Plant Signal Behav.15, 1733814.

• Tokumoto, Y., Hashimoto, K., Soyano, T., Aoki, S., Iwasaki, W., Fukuhara, M., Nakagawa, T.，Saeki，K., Yokoyama, J., Fujita, H. and Kawaguchi, M. (2020). Assessment of Polygala paniculata (Polygalaceae) characteristics for evolutionary studies of legume-rhizobia symbiosis. J Plant Res. 133, 109-122.

• Fujita, H., Hayashi-Tsugane, M. and Kawaguchi, M. (2020). Spatial regulation of resource allocation in response to nutritional availability. J Theor Biol. 486, 110078.

2019

• Kameoka, H., Tsutsui, I., Saito, K., Kikuchi, Y., Handa, Y., Ezawa, T., Hayashi, H., Kawaguchi, M. and Akiyama, K. (2019). Fatty acids stimulate asymbiotic sporulation in arbuscular mycorrhizal fungi. Nat Microbiol. 4, 1654-1660

• Suzaki, T., Takeda, N., Nishida, H., Hoshino, M., Ito, M., Misawa, F., Handa, Y., Miura, K. and Kawaguchi M. (2019). LACK OF SYMBIONT ACCOMMODATION controls intracellular symbiont accommodation in root nodule and arbuscular mycorrhizal symbiosis in Lotus japonicus. PLoS Genet. 15, e1007865.

• Yoro, E., Nishida, H., Ogawa-Ohnishi, M., Yoshida, C., Suzaki, T., Matsubayashi, Y. and Kawaguchi, M. (2019). PLENTY, a hydroxyproline O-arabinosyltransferase, negatively regulates root nodule symbiosis in Lotus japonicus. J ExpBot. 70, 507-517.

• Liu, M., Soyano, T., Hayashi, M. and Kawaguchi, M. (2019). ERN1 and CYCLOPS coordinately activate NIN signaling to promote infection thread formation in Lotus japonicus. J Plant Res. 132, 641-653.

• Kameoka, H., Maeda,T., Okuma,N. and Kawaguchi, M. (2019). Structure-specific regulation of nutrient transport and metabolism in arbuscular mycorrhizal fungi. Plant Cell Physiol. 60, 2272-2281.

• Soyano, T., Shimoda, Y., Kawaguchi, M. and Hayashi, M. (2019). A shared gene drives lateral root development and root nodule symbiosis pathways in Lotus. Science 366, 1021-1023.

2018

• Fujita, H. and Kawaguchi M. (2018). Spatial regularity control of phyllotaxis pattern generated by the mutual interaction between auxin and PIN1.PLoS Comput Biol. 14, e1006065.

• Yamaya-Ito, H., Shimoda, Y., Hakoyama, T., Sato, S., Kaneko, T., Hossain, MS., Shibata, S., Kawaguchi, M., Hayashi, M., Kouchi, H. and Umehara, Y. (2018). Loss-of-function of ASPARTIC PEPTIDASE NODULE-INDUCED 1 (APN1) in Lotus japonicus restricts efficient nitrogen-fixing symbiosis with specific Mesorhizobium loti strains. Plant J. 93, 5-16.

• Nishida, H., Tanaka, S., Handa, Y., Ito, M., Sakamoto, Y., Matsunaga, S., Betsuyaku, S., Miura, K., Soyano, T.，Kawaguchi, M. and Suzaki, T. (2018). A NIN-LIKE PROTEIN mediates nitrate-induced control of root nodule symbiosis in Lotus japonicus. Nat Commun. 9, 499.

• Nishida, H. and Suzaki, T.(2018). Nitrate-mediated control of root nodule symbiosis. Curr. Opin. Plant Biol. 44, 129-136.

• Nishida, H. and Suzaki, T.(2018). Two negative regulatory systems of root nodule symbiosis - how are symbiotic benefits and costs balanced?. Plant Cell Physiol. 59, 1733-1738.

• Kobayashi, Y., Maeda,T., Yamaguchi, K., Kameoka, H., Tanaka, S., Ezawa, T., Shigenobu, S. and Kawaguchi, M. (2018). The genome of Rhizophagus clarusHR1 reveals a common genetic basis for auxotrophy among arbuscular mycorrhizal fungi. BMC Genomics. 19,465.

• Maeda, T., Kobayashi, Y., Kameoka, H., Okuma, N., Takeda, N., Yamaguchi, K., Bino, T., Shigenobu, S. and Kawaguchi, M. (2018). Evidence of non-tandemly repeated rDNAs and their intragenomic heterogeneity in Rhizophagus irregularis. Commun Biol. 1,87

• Murakami, E., Cheng, J., Gysel, K., Bozsoki, Z., Kawaharada, Y., Hjuler, C.T., Sorensen, K.K., Tao, K., Kelly, S., Venice, F., Genre, A., Thygesen, M.B., Jong, N.D., Vinther, M., Jensen, D.B., Jensen, K.J., Blaise, M., Madsen, L.H., Andersen, K.R. and Stougaard, J. (2018). Epidermal LysM receptor ensures robust symbiotic signalling in Lotus japonicus. eLife 7,e33506.

2017

• Carotenuto, G., Chabaud, M., Miyata, K., Capozzi, M., Takeda, N., Kaku, H., Shibuya, N., Nakagawa, T., Barker, D. and Genre, A. (2017). The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling. New Phytol. 214, 1440-1446.

• Ohtsu, M., Sato, Y., Kurihara, D., Suzaki, T., Kawaguchi, M., Maruyama, D. and Higashiyama, T. (2017). Spatiotemporal deep imaging of syncytium induced by the soybean cyst nematode Heterodera glycines. Protoplasma 254, 2107-2115.

• Ohtsu, M., Kurihara, D., Sato, Y., Suzaki, T., Kawaguchi, M., Maruyama, D. and Higashiyama, T. (2017). Fluorescent labeling of the cyst nematode Heterodera glycines for deep tissue live imaging using two-photon microscopy. Cytologia 82, 251-259.

• Yano, K., Aoki, S., Liu, M., Umehara, Y., Suganuma, N., Iwasaki, W., Sato, S., Soyano, T., Kouchi, H. and Kawaguchi, M. (2017). Function and evolution of a Lotus japonicusAP2/ERF family transcription factor that is required for development of infection threads. DNA Res. 24, 193-203.

2016

• Nagae, M., Parniske, M., Kawaguchi, M. and Takeda, N. (2016). The relationship between thiamine and two symbioses: root nodule symbiosis and arbuscular mycorrhiza. Plant Signal Behav. 11, e1265723.

• Nagae, M., Parniske, M., Kawaguchi, M. and Takeda, N. (2016). The thiamine biosynthesis gene THI1 promotes nodule growth and seed maturation. Plant Physiol. 172, 2033-2043.

• Miyata, K., Hayafune, M., Kobae, Y., Kaku, H., Nishizawa, Y., Masuda, Y., Shibuya, N. and Nakagawa, T. (2016) Evaluation of the role of the LysM receptor-like kinase, OsNFR5/OsRLK2 for AM symbiosis in rice. Plant Cell Physiol. 11, 2283-2290.

• Malolepszy, A., Mun, T., Sandal, N., Gupta, V., Dubin, M., Urbański, D., Shah, N., Bachmann, A., Fukai, E., Hirakawa, H., Tabata, S., Nadzieja, M., Markmann, K., Su, J., Umehara, Y., Soyano, T., Miyahara, A., Satoh, S., Hayashi, M., Stougaard, J., and Andersen, S. (2016). The LORE1 insertion mutant resource. Plant J. 88, 306-317.

• Kameoka, H., Dun, E. A., Lopez-Obando, M., Brewer P. B., de Saint Germain, A., Rameau, C., Beveridge, C. A., Kyozuka, J. (2016). Phloem transport of the receptor DWARF14 protein is required for full function of strigolactones. Plant Physiol. 172, 1844–1852.

• Nishida, H., Handa, Y., Tanaka, S., Suzaki, T. and Kawaguchi, M. (2016). Expression of the CLE-RS3 gene suppresses root nodulation in Lotus japonicus. J Plant Res. 129, 909-919.

• Kikuchi, Y., Hijikata, N., Ohtomo, R., Handa, Y., Kawaguchi, M., Saito, K., Masuta, C. and Ezawa, T. (2016). Aquaporin-mediated long-distance polyphosphate translocation directed towards the host in arbuscular mycorrhizal symbiosis: application of virus induced gene silencing. New Phytol. 211, 1202-1208.

• Tsuzuki, S., Handa, Y., Takeda, N. and Kawaguchi, M. (2016). Strigolactone-induced putative secreted protein 1 is required for theestablishment of symbiosis by the arbuscular mycorrhizal fungus Rhizophagusirregulars. Mol Plant Microbe Interact. 29, 277-286.

• Tokumoto, Y., Kajiura, H., Takeno, S., Harada, Y., Suzuki, N., Hosaka, T., Gyokusen, K. and Nakazawa, Y. (2016). Induction of tetraploid hardy rubber tree, Eucommia ulmoides, and phenotypic differences from diploid. Plant Biotechnol. 33, 51-57.

• Tokumoto, Y. and Nakagawa, M. (2016). Climate-induced abortion and predation: reproductive success of the pioneer shrub Dillenia suffruticosa in Malaysian Borneo. JTrop Ecol. 32, 50-62.

2015

• Nakagawa, T. and Imaizumi-Anraku, H. (2015). Rice arbuscular mycorrhiza as a tool to study the molecular mechanisms of fungal symbiosis and a potential target to increase productivity. Rice 8, 32.

• Okamoto, S., Suzuki, T., Kawaguchi, M., Higashiyama, T. and Matsubayashi, Y. (2015). A comprehensive strategy for identifying l ong-distance mobile peptides in xylem sap. Plant J. 84, 611-620..

• Sugiyama, A., Fukuda, S., Takanashi, K., Yoshioka, M., Yoshioka, H., Narusaka, Y., Narusaka, M., Kojima, M., Sakakibara, H., Shitan, N., Sato, S., Tabata, S., Kawaguchi, M. and Yazaki, K. (2015). Molecular characterization of LjABCG1, and ABC-binding cassette protein in Lotus japonicus. PLoS One 10, e0139127.

• Horst, R.J., Fujita, H., Lee, J.S., Rychel, A.L., Garrick, J.M., Kawaguchi, M., Peterson, K.M. and Torii, K.U. (2015). Molecular framework of a regulatory circuit initiating two-dimensional spatial patterning of stomatal lineage. PLoS Genet. 11, e1005374.

• Shinya, T., Nakagawa, T., Kaku, H. and Shibuya, N. (2015). Chitin-mediated plant-fungal interactions: catching, hiding and handshaking. Curr OpinPlant Biol. 26, 64-71. 　　　　　　

• Okamoto, S. and Kawaguchi, M. (2015). Shoot HAR1 mediates nitrate inhibition of nodulation in Lotus japonicus.Plant Signal Behav. 10, e1000138. 　　　　　　

• Takeda, N., Handa, Y., Tsuzuki, S., Kojima, M., Sakakibara, H. and Kawaguchi, M. (2015). Gibberellin regulates infection and colonization of host roots by arbuscular mycorrhizal fungi. Plant Signal Behav.10, 1-3. 　　　　　　

• Handa, Y., Nishide, H., Takeda, N., Suzuki, Y., Kawaguchi, M. and Saito, K. (2015). RNA-seq transcriptional profiling of an arbuscular mycorrhiza provides insights into regulated and coordinated gene expression in Lotus japonicus and Rhizophagus irregulars. Plant Cell Physiol. 56, 1490-511. 　　　

• Fukushima, K., Fujita, H., Yamaguchi, T., Kawaguchi, M., Tsukaya, H. and Hasebe M. (2015). Oriented cell division shapes carnivorous pitcher leaves of Sarracenia purpurea. Nat Commun. 6, 6450.

• Suzaki, T., Yoro, E. and Kawaguchi, M. (2015). Leguminous plants: inventors of root nodules to accommodate symbiotic bacteria. Int Rev Cell Mol Biol. 316, 111-158.

• Takeda, N., Handa, Y., Tsuzuki, S., Kojima, M., Sakakibara, H. and Kawaguchi, M. (2015). Gibberellins interfere with symbiosis signaling and gene expression and alter colonization by arbuscular mycorrhizal fungi in Lotus japonicus. Plant Physiol. 167, 545-557.

2014

• Daum, G., Medzihradszky, A., Suzaki, T. and Lohmann J.U. (2014). A mechanistic framework for noncell autonomous stem cell induction in Arabidopsis. Proc Natl Acad SciUSA 111, 14619-14624.

• Sasaki, T., Suzaki, T., Soyano, T., Kojima, M., Sakakibara, H. and Kawaguchi, M. (2014). Shoot-derived cytokinins systemically regulate root nodulation. Nat Commun. 5: 4983.

• Soyano, T., Hirakawa, H., Sato, S., Hayashi, M. and Kawaguchi, M. (2014). NODULE INCEPTION creates a long-distance negative feedback loop involved in homeostatic regulation of nodule organ production. Proc Natl Acad Sci USA 111, 14607-14612.

• Suzaki, T. and Kawaguchi, M. (2014). Root nodulation: a developmental program involving cell fate conversion triggered by symbiotic bacterial infection. Curr Opin Plant Biol. 21, 16-22.

• Suzaki, T., Ito, M., Yoro, E., Sato, S., Hirakawa, H. Takeda, N. and Kawaguchi, M. (2014). Endoreduplication-mediated initiation of symbiotic organ development in Lotus japonicus. Development 141: 2441-2445

• Yoro, E., Suzaki, T., Toyokura, K., Miyazawa, H., Fukaki, H., and Kawaguchi, M. (2014). A positive regulator of nodule organogenesis, NODULE INCEPTION, acts as a negative regulator of rhizobial infection in Lotus japonicus.Plant Physiol.165,747-758.

• Kikuchi, Y., Hijikata, N., Yokoyama, K., Ohtomo, R., Handa, Y., Kawaguchi, M., Saito, K. and Ezawa, T. (2014). Polyphosphate accumulation is driven by transcriptome alterations that lead to near-synchronous and near-equivalent uptake of inorganic cations in an arbuscular mycorrhizal fungus. New Phytol. 204, 638-649.

• Wakabayashi, T., Oh, H., Kawaguchi, M., Harada, K., Sato, S., Ikeda, H. and Setoguchi, H. (2014). Polymorphisms of E1 and GIGANTIA in wild populations of Lotus japonicus. J Plant Res. 127, 651-660.

• Nagae, M., Takeda, N. and Kawaguchi, M. (2014). Common symbiosis genes CERBERUSandNSP1 provide additional insight into the establishment of arbuscular mycorrhizal and root nodule symbioses. Plant Signal Behav. 9, e28544

• Fujita, H., Aoki, S. and Kawaguchi, M. (2014). Evolutionary dynamics of nitrogen fixation in the legume-rhizobia symbiosis. PLoS One 9, e93670.

• Kojima,T., Saito, K., Oba, H., Yoshida, Y., Terasawa, J., Umehara, Y., Suganuma, N., Kawaguchi, M. and Ohtomo, R. (2014). Isolation and phenotypic characterization of Lotus japonicus mutants specifically defective in arbuscular mycorrhizal formation. Plant Cell Physiol. 55, 928-941

• Soyano, T. and Kawaguchi, M. (2014). Systemic regulation of root nodule formation. Review. In Advances in Biology and Ecology of Nitrogen Fixation edited by Takuji Ohyama, InTech 89-109

2013

• Sasaki, T., Suzaki ,T. and Kawaguchi, M. (2013). Stable transformation in Lotus japonicus. Bio-protocol 3, e796

• Okamoto, S., Yoro,E., Suzaki, T. and Kawaguchi, M. (2013). Hairy root transformation inLotus japonicus. Bio-protocol 3, e795

• Tisserant E, Malbreil M, Kuo A, Kohler A, Symeonidi A, Balestrini R, Charron P, Duensing N, Freidit Frey N, Gianinazzi-Pearson V, Gilbert B, Handa Y, Herr J, Hijri M, Koul R, Kawaguchi M, Krajinski F, Lammers P, Masclaux FG, Murat C, Morin E, Ndikumana S, Pagni M, Petitpierre D, Requena N, Rosikiewicz P, Riley R, Saito K, San Clemente H, Shapiro H, van Tuinen D, Bécard G, Bonfante P, Paszkowski U, Shachar-Hill Y, Tuskan GA, Young JPW, Sanders IR, Henrissat B, Rensing SA, Grigoriev IV, Corradi N, Roux C and Martin F. (2013). The genome of an arbuscular mycorrhizal fungus provides insights into the oldest plant symbiosis. Proc Natl Acad SciUSA 110, 20117-22

• Tanabata, S., Ohtake, N., Sueyoshi, K., Kawaguchi, M. and Ohyama, T. (2013). Leaf growth of Lotus japonicus hypernodulation mutanthar1-4. Bull Facul Agric Niigata Univ. 66, 21-24

• Murakami Y, Imaizumi-Anraku H, Kouchi H, Kawaguchi M and Kawasaki S (2013). The transcription activation and homodimerization ofLotus japonicusNod factor Signaling Pathway2 protein. Plant Signal behav8, e26457.

• Okamoto S, Shinohara H, Mori T, Matsubayashi Y and Kawaguchi M (2013). Root-derived CLE glycopeptides control nodulation by direct binding to HAR1 receptor kinase. Nat Commun 4, 2191

• Takeda N, Tsuzuki S, Suzaki T, Parniske M and Kawaguchi M (2013) . CERBERUS and NSP1 of Lotus japonicus are common symbiosis genes that modulate arbuscular mycorrhiza development. Plant Cell Physiol. 54, 1711-23

• Miyata K, Kawaguchi M and Nakagawa T (2013). Two distinct EIN2 genes cooperatively regulate ethylene signaling in Lotus japonicus. Plant Cell Physiol. 54, 1469-77

• Tameshige T, Fujita H, Watanabe K, Toyokura K, Kondo M, Tatematsu K, Matsumoto N, Tsugeki R, Kawaguchi M, Nishimura M and Okada K (2013). Pattern dynamics in adaxial-abaxial specific gene expression are modulated by a plastid retrograde signal during Arabidopsis leaf development. PLoS Genetics e1003655

• Suzaki, T., Ito, M., and Kawaguchi, M. (2013). Genetic basis of cytokinin and auxin functions during root nodule development. Front Plant Sci 4, 42.

• Takahara M, Magori S, Soyano T, Okamoto S, Yoshida C, Yano K, Sato S, Tabata S, Yamaguchi K, Shigenobu S, Takeda N, Suzaki T, Kawaguchi M (2013). TOO MUCH LOVE, a novel kelch repeat-containing F-box protein, functions in the long-distance regulation of the legume-Rhizobium symmbiosis. Plant Cell Physiol Rapid paper 54, 433-437.

• Soyano T, Kouchi H, Hirota A and Hayashi M (2013). NODULE INCEPTION directly targets NF-Y subunit genes to regulate essential processes of root nodule development inLotus japonicus.PLoS Genetics 9, e 1003352.

• Fujita, H. and Kawaguchi, M (2013). Pattern formation by two-layer Turing system with complementary synthesis. J Theor Biol.322, 33-45.

• 
  Murakami Y, Yokoyama H, Fukui R and Kawaguchi M(2013). Downregulation of NSP2 expression in developmentally young regions of Lotus japonicus roots in response to rhizobial Inoculation. Plant Cell Physiol.54, 518-27.

• Suzaki, T. and Kawaguchi, M (2013). Grafting analysis indicates that malfunction of TRICOT in the root causes a nodulation-deficient phenotype in Lotus japonicus. Plant Signa Behav 8, e23497.

• Suzaki, T, Ito, M, and Kawaguchi, M (2013). Induction of localized auxin response during spontaneous nodule development inLotus japonicus.Plant Signal Behav8, e23359.

• Suzaki, T, Kim, C.S, Takeda, N, Szczyglowski, K. and Kawaguchi, M (2013). TRICOT encodes an AMP1-related carboxypeptidase that regulates root nodule development and shoot apical meristem maintenance in Lotus japonicus.Development140, 353-361.　　　　

2012

• Suzaki T, Yano K, Ito M, Umehara Y, Suganuma N, and Kawaguchi M(2012). Positive and negative regulation of cortical cell division during root nodule development in Lotus japonicus is accompanied by auxin response. Development 139, 3397-4006

• Hakoyama T, Oi R, Hazuma K, Suga E, Adachi Y, Kobayashi M, Akai R, Sato S, Fukai E, Tabata S, Shibata S, Wu GJ, Hase Y, Tanaka A, , Kouchi H, Umehara Y, Suganuma N (2012) . The SNARE Protein SYP71 Expressed in Vascular Tissues is Involved in Symbiotic Nitrogen Fixation in Lotus japonicus Nodules. Plant Physiol. 160, 897-905

• Chen J, Moreau C, Liu Y, Kawaguchi M, Hofer J, Ellis N and Chen R (2012).Conserved genetic determinant of motor organ identity in Medicago truncatula and related legumes.Proc. Natl. Acad. Sci. USA 109, 11723-8

• Sandal N, Jin H, Rodriguez-Navarro DN, Temprano F, Cvitanich C, Brachmann A, Sato S, Kawaguchi M, Tabata S, Parniske M, Ruiz-Sainz JE, Andersen SU and Stougaard J (2012) . A set of Lotus japonicus Gifu x Lotus burttii recombinant inbred lines facilitate map-based cloning and QTL mapping. DNA Research 19, 317-23

• Takeda N, Maekawa T, and Hayashi M (2012). Nuclear Localized and Deregulated Calcium and Calmodulin–Dependent Protein Kinase Activates Rhizobial and Mycorrhizal Responses. Plant Cell 24, 810-22

• Hakoyama T, Niimi K, Yamamoto T, Isobe S, Sato S, Nakamura Y, Tabata S, Kumagai H, Umehara Y, Brossuleit K, Petersen TR, Sandal N, Stougaard J, Udvardi MK, Tamaoki M, Kawaguchi M, Kouchi H, Suganuma N(2012). The Intergral Membrane Protein SEN1 is Required for Symbiotic Nitrogen Fixation in Lotus japonicus Nodules. Plant Cell Physiol. 53, 225-36

2011

• Fujita H, Kawaguchi M(2011). Strategy for shoot meristem proliferation in plants. Plant Signaling Behavior 6, 1851-1854

• Okamoto S, Nakagawa T, Kawaguchi M(2011) . Expression and functional analysis of a CLV3-like gene in the model legume Lotus japonicus. Plant Cell Physiol. 52 1211-21

• Kawaguchi M(2011). The evolution of symbiotic systems. Cellular and Molecular Life Sciences 68, 1283-4

• Fujita H, Toyokura K, Okada K, Kawaguchi M(2011) . Reaction-diffusion pattern in shoot apical meristem of plants. PLoS One. 6(3): e18243

• Takeda N, Haage K, Sato S, Tabata S, Parniske M(2011) . Activation of a Lotus japonicus subtilase gene during arbuscular mycorrhiza is dependent on the common symbiosis genes and two cis-active promoter regions. Molecular Plant-Microbe Interactions 24, 662-70

• Krusell L, Sato N, Fukuhara I, Koch B, Grossmann C, Okamoto S, Oka-Kira E, Otsubo Y, Aubert G, Nakagawa T, Sato S, Tabata S, Duc G, Parniske M, Wang T. L, Kawaguchi M, Stougaard J(2011). The Clavata2 genes of pea and Lotus japonicus affect autoregulation of nodulation. Plant Journal65, 861-71

• Funayama-Noguchi S, Noguchi K, Yoshida C and Kawaguchi M(2011). Two CLE genes are induced by phosphate in roots of Lotus japonicus. J. Plant Res. 124, 155-63

2010

• Miyazawa H, Oka-Kira E, Sato N, Takahashi H, Wu, G. J., Sato S, Hayashi M, Betsuyaku, S, Nakazono M, Tabata S, Harada K, Sawa S, Fukuda H and Kawaguchi M(2010) . A receptor-like kinase, KLAVIER, mediates systemic regulation of nodulation and non-symbiotic shoot development in Lotus japonicus. Development 137, 4317-25

• Yoshida C, Funayama-Noguchi S, Kawaguchi M(2010). plenty, a novel hypernodulation mutant in Lotus japonicus. Plant Cell Physiol. 51, 1425-35

• Kouchi H, Imaizumi-Anraku H, Hayashi M, Hakoyama T, Nakagawa T, Umehara Y, Suganuma N, Kawaguchi M (2010) . How many peas in a pod? Legume genes responsible for mutualistic symbioses underground. Plant Cell Physiol. 51, 1381-97

• Groth M, Takeda N, Perry J, Uchida H, Dräxl S, Sato S, Tabata S, Kawaguchi M, Wang T(2010) . L and Parniske M. NENA a Lotus japonicus homolog of Sec13, is required for rhizodermal infection by arbuscularmycorrhiza fungi and rhizobia but dispensable for cortical endosymbiotic development.Plant Cell 22, 2509-26

• Magori S and Kawaguchi M(2010) . Analysis of two potential long-distance signaling molecules, LjCLE-RS1/2 and jasmonic acid, in a hypernodulating mutant too much love. Plant Signal Behav. 5, 403-405

• Magori S, Tanaka A and Kawaguchi M(2010). Physically-induced mutation: ion beam mutagenesis. In The Handbook of Plant Mutation Screening: Mining of Natural and Induced Alleles, (Meksem, K. and Kahl, G., eds.), Wiley-Blackwell-VCH. 3-16

2009

• Hakoyama, T, Niimi K, Watanabe H, Tabata R, Matsubara J, Sato S, Nakamura Y, Tabata S, Li J, Matsumoto T, Tatsumi K, Nomura M, Tajima S, Ishizaka M, Yano K, Imaizumi-Anraku H, Kawaguchi M, Kouchi H and Suganuma N(2009) . Host plant genome overcomes a lack of bacterial gene for symbiotic nitrogen fixation. Nature 462, 514-7

• Karas B, Amyot L, Johansen C, Sato S, Tabata S, Kawaguchi M and Szczyglowski K(2009). Conservation of Lotus and Arabidopsis basic helix-loop-helix proteins reveals new players in root hair development. Plant Physiology 151, 1175-85

• Magori S, Oka-Kira E, Shibata S, Umehara Y, Kouchi H, Hase Y, Tanaka A, Sato S, Tabata S and Kawaguchi M(2009). TOO MUCH LOVE, a root regulator associated with the long-distance control of nodulation in Lotus japonicus. Molecular Plant-Microbe Interactions22, 259-68

• Okamoto S, Ohnishi E, Sato S, Takahashi H, Nakazono M, Tabata S and Kawaguchi M (2009) .Nod factor/nitrate-induced CLE genes that drive HAR1-mediated systemic regulation of nodulation Plant Cell Physiol. 50, 67-77

• Kubo M, Ueda H, Park P, Kawaguchi M and Sugimoto Y (2009) . Reactions of Lotus japonicus ecotypes and mutants to root parasitic plants. J. Plant Physiol.166, 353-62

• Magori S and Kawaguchi M (2009). Long-distance control of nodulation: molecules and models.Molecules Cells27, 1-10

2008

• Yano K, Yoshida S, Muller J, Singh S, Banba M, Vickers K, Markmann K, White C, Schuller B, Sato S, Asamizu E, Tabata S, Murooka Y, Perry J, Wang TL, Kawaguchi M, Imaizumi-Anraku H, Hayashi M and Parniske M(2008). CYCLOPS, a mediator of symbiotic intracellular accommodation. Proc Natl Acad SciUSA 105, 20540-5

• Fujita H, Syono K, Machida Y and Kawaguchi K (2008). Morphological effects of sinefungin, an inhibitor of S-adenosylmethionine-dependent methyltransferases, on Anabaena sp. PCC 7120. Microbes Environ. 23, 346-49

• Mishima E, Hosokawa A, Imaimi-Anraku H, Saito K, Kawaguchi M and Saeki K (2008) . Requirement of Mesorhizobium loti Ornithine transcarbamoylase for successful symbiosis with Lotus japonicus as revealed by an unexpected long-range genome deletion. Plant Cell Physiol. 49, 301-13

2007

• Senoo K, Solaiman Z, Tanaka S, Kawaguchi M, Imaizumi-Anraku H, Akao S, Tanaka A and Obata H(2007) . Isolation and characterization of arbuscules from roots of an increased-arbuscule-forming mutant of Lotus japonicus. Annals Botany 100,　1599-603

• Saito K, Yoshikawa M, Yano K, Miwa H, Uchida H, Asamizu E, Sato S, Tabata S, Imaizumi-Anraku H, Umehara Y, Kouchi H, Murooka Y, Szczyglowski K, Downie JA, Parniske M, Hayashi M and Kawaguchi M(2007). NUCLEOPORIN85　is required for calcium spiking, fungal and bacterial symbioses and seed production in Lotus japonicus. Plant Cell 19, 610-624

2006

• Murakami Y, Miwa H, Imaizumi-Anraku H, Kouchi H, Downie JA, Kawaguchi M and Kawasaki S (2006) .Positional cloning identifies Lotus japonicus NSP2, A putative transcription factor of the GRAS family, required for NIN and ENOD40 gene expression in nodule initiation. DNA Research 13, 255-65

• Tirichine L, Imaizumi-Anraku H, Yoshida S, Murakami Y, Madsen LH, Miwa H, Nakagawa T, Sandal N, Albrektsen AS, Kawaguchi M, Downie A, Sato S, Tabata S, Kouchi H, Parniske M, Kawasaki S and Stougaard J(2006). Deregulation of a Ca2+/calmodulin dependent kinase leads to spontaneous nodule development. Nature 441, 1153-56

• Yano K, Tansengco ML, Hio T, Murooka M, Imaizumi-Anraku H, Kawaguchi M, and Hayashi M(2006). New nodulation mutants responsible for infection thread development in Lotus japonicus. Molecular Plant-Microbe Interactions19, 801-10

• Nakagawa T and Kawaguchi M(2006). Shoot-applied MeJA suppresses root nodulation in Lotus japonicus. Plant Cell Physiol. 47, 176-80

• Sandal N, Petersen TR, Murray J, Umehara Y, Karas B, Yano K ,Kumagai H, Yoshikawa M, Saito K, Hayashi M, Murakami Y, Wang X, Hakoyama T, Imaizumi-Anraku H, Sato S, Kato T, Chen W, Hossain Md S, Shibata S, Wang T, Yokota K, Larsen K, Kanamori N , Madsen E, Radutoiu S, Madsen LH, Radu TG, Krusell L, Ooki Y, Banba M, Betti M, Rispail N, Skot L, Tuck E, Perry J, Yoshida S, Vickers K, Pike J, Mulder L, Charpentier M, Muller J, Ohtomo R, Kojima T, Ando S, Marquez AJ, Gresshoff PM, Harada K, Webb J, Hata S, Suganuma N, Kouchi H, Kawasaki S, Tabata S, Hayashi M, Parniske M, Szczyglowski K, Kawaguchi M and Stougaard J (2006). Genetics of Symbiosis in Lotus japonicus: Recombinant Inbred Lines, Comparative Genetic Maps and Map Position of 35 Symbiotic Loci. Molecular Plant-Microbe Interactions19, 80-91

• Oka-Kira E and Kawaguchi M (2006) . Long-distance signaling to control root nodule number. Curr. Opin. Plant Biol.9, 496-502

2005

• Oka-Kira E, Tateno K, Miura K, Haga T, Hayashi M, Harada K, Sato S, Tabata S, Shikazono N, Tanaka A, Watanabe Y, Fukuhara I, Nagata T and Kawaguchi M(2005) . klavier (klv), a novel hypernodulation mutant of Lotus japonicus affected in leaf vein and floral induction. Plant J. 44, 505-15

• Krusell L, Krause K, Ott T, Desbrosses G, Kraemer U, Sato S, Nakamura Y, Tabata S, James EK, Sandal N, Stougaard J, Kawaguchi M, Miyamoto A, Suganuma N and Udvardi MK(2005) . The sulfate transporter SST1 is crucial for symbiotic nitrogen fixation in Lotus japonicus root nodules. Plant Cell 17, 1625-36

• Ooki Y, Banba M, Yano K, Maruya J, Sato S, Tabata S, Saeki K, Hayashi M, Kawaguchi M, Izui K and Hata S (2005). Characterization of a Lotus japonicus symbiotic mutant, lot1, that shows a reduced nodule number and distorted trichomes. Plant Physiol. 137, 1261-71

• Kawaguchi M, Pedrosa-Harand A, Yano K, Hayashi M, Murooka Y, Saito K, Nagata T, Namai K, Nishida H, Shibata D, Sato S, Tabata S, Hayashi M, Harada K, Sandal N, Stougaard J, Bachmair A and Grant WF(2005) . Lotus burttii takes a position of the third corner in the Lotus molecular genetics triangle. DNA Research 12, 63-71

• Imaizumi-Anraku H, Takeda N, Charpentier M, Perry J, Miwa H, Umehara Y, Kouchi H Murakami Y, Mulder L, Vickers K, Pike J, Downie A, Wang T, Sato S, Asamizu E, Tabata S, Yoshikawa M, Murooka Y, Wu G.-J, Kawaguchi M, Kawasaki S, Parniske M, Hayashi M (2005) . Plastid proteins crucial for symbiotic fungal and bacterial entry into plant roots. Nature 433, 527-31

• Kawaguchi M(2005) . Genome and post-genomic researches in Lotus japonicus. Gamma Field Symposia 44, 15-22

2004

• Suganuma N, Yamamoto A, Itou A, Hakoyama T, Banba M, Hata S, Kawaguchi M, and Kouchi H(2004) . cDNA macroarray analysis of gene expression in ineffective nodules induced on the Lotus japonicus sen1 mutant. Molecular Plant-Microbe Interactions17, 1223-33

• Tansengco ML, Imaizumi-Anraku H, Yoshikawa M, Takagi S, Kawaguchi M, Hayashi M and Murooka Y(2004). Pollen development and tube growth are affected in the symbiotic mutant of Lotus japonicus, crinkle. Plant Cell Physiol. 45, 511-20

• Arai Y, Kawaguchi M, Syono K and Ikuta A(2004). Partial purification of an enzyme hydrolyzing indole-3-acetamide from rice cells. JPlant Res. 117,191-82

2003

• Suganuma N, NakamuraY, Yamamoto M, Ohta T, Koiwa H, Akao S and Kawaguchi M (2003) . The Lotus japonicus Sen1 gene controls rhizobial differentiation into nitrogen-fixing bacteroids in nodules. Mol Genet Genomics269, 312-20

• Tansengco M, Hayashi M, Kawaguchi M, Imaizumi-Anraku H and Murooka Y(2003). crinkle, a novel symbiotic mutant that affects the infection thread growth and alters the root hair, trichome and seed development in Lotus japonicus. Plant Physiol.131, 1054-63

• Kawaguchi, M. SLEEPLESS, a gene conferring nyctinastic movement in legume(2003). J. Plant Res. 116, 151-4

• Hayashi M, Aoki T, Isobe S, Harada K, Kouchi H, Minamisawa K, Saeki K, Sato S, Tabata S and Kawaguchi M(2003). A Domestic Weed goes Worldwide: Recent Progress on Lotus Research in Japan. Plant Physiol.(Legume issue) 131, 840-2

2002

• Nishimura R, Hayashi M, Wu G-J, Kouchi H, Imaizumi-Anraku H, Murakami Y, Kawasaki S, Akao S, Ohmori M, Nagasawa M, Harada K and Kawaguchi M(2002) . HAR1 mediates systemic regulation of symbiotic organ development. Nature 420, 426-9

• Nishimura R, Ohmori M, Fujita H and Kawaguchi M (2002). A Lotus basic leucine zipper protein with a RING-finger motif negatively regulates the developmental program of nodulation. Proc. Natl. Acad. Sci. USA 99, 15206-15210

• Nishimura R, Ohmori M and Kawaguchi M (2002). The novel symbiotic phenotype of enhanced-nodulating mutant of Lotus japonicus - astray is an early nodulating mutant with wider nodulation zone. Plant Cell Physiol. 43, 853-9

• Kawaguchi M, Imaizumi-Anraku H, Koiwa H, Niwa S, Ikuta A, Syono K and Akao S(2002). Root, root hair, and symbiotic mutants of the model legume Lotus japonicus. Molecular Plant-Microbe Interactions 15, 17-26

2001

• Hayashi M, Miyahara A, Sato S, Kato T, Yoshikawa M, Taketa M, Hayashi M, Pedrosa A, Onda R, Imaizumi-Anraku H, Bachmair A, Sandal N, Stougaard J, Murooka Y, Tabata S, Kawasaki S, Kawaguchi M and Harada K(2001) . Construction of a genetic linkage map of the model legume Lotus japonicus using an intraspecific F2 Population. DNA Research 8, 301?10

• Niwa S, Kawaguchi M, Imaizumi-Anraku H, Chechetka SA, Ishizuka M, Ikuta A and Kouchi H(2001) . Responses of a model legume Lotus japonicus to lipochitin oligosaccharide nodulation factors purified from Mesorhizobium loti JRL501. Molecular Plant-Microbe Interactions 14, 848-56

• Kawaguchi M, Motomura T, Imaizumi-Anraku H, Akao S and Kawasaki S(2001). Providing the basis for genomics in Lotus japonicus: the accessions Miyakojima and Gifu are appropriate crossing partners for genetic analyses. Mol. Gen. Genomics266, 157-66

2000

• Ozawa R, Shimoda T, Kawaguchi M, Arimura G, Nishioka T and Takabayashi J(2000). Lotus japonicus infested with herviborous mites emits volatiles that attract predatory mites. J.Plant Res. 113, 427-33

• Solaiman MZ, Senoo K, Kawaguchi M, Imaizumi-Anraku H, Akao S, Tanaka A and Obata H(2000) . Characterization of mycorrhizas formed by Glomus sp. on root of hypernodulating mutants of Lotus japonicus. J. Plant Res. 113, 443-8

• Senoo K, Solaiman MZ, Kawaguchi M, Imaizumi-Anraku H, Akao S, Tanaka A and Obata H(2000). Isolation of two different phenotypes of mycorrhizal mutants in the model legume plant Lotus japonicus after EMS-treatment. Plant Cell Physiol. 41, 726-32

• Imaizumi-Anraku H, Kouchi H, Syono K, Akao S and Kawaguchi M(2000). Analysis of ENOD40 expression in alb1, a symbiotic mutant of Lotus japonicus that forms empty nodules with incompletely developed nodule vascular bundles. Mol. Gen. Genet. 264, 402-10

• Kawaguchi M(2000). Lotus japonicus 'Miyakojima' MG-20: An early flowering accession suitable for indoor handling. J. Plant Res. 113, 507-9

• Hayashi M, Imaizumi-Anraku H, Akao S and Kawaguchi M(2000). Nodule organogenesis in Lotus japonicus. J. Plant Res. 113, 489-95

1997

• Imaizumi-Anraku H, Kawaguchi M, Koiwa H, Akao S and Syono K (1997) . Two ineffective-nodulating mutants of Lotus japonicus. Different phenotypes caused by the blockage of endocytotic bacterial release and nodule maturation. Plant Cell Physiol. 38, 871-81

1996

• Kawaguchi M, Imaizumi-Anraku H, Fukai S and Syono K(1996). Unusual branching in the seedlings of Lotus japonicus - Gibberellins reveal the nitrogen-sensitive cell divisions within the pericycle on roots. Plant Cell Physiol. 37, 461-70

日本语

2009

吉良（岡）恵利佳、川口正代司：根粒形成制御における地上部と地下部のコミュニケーション　日本生態学会誌 59, 65-70

2009

川口正代司：ミヤコグサで根粒菌や菌根菌との共生とその進化を知る　研究を支えるモデル生物　化学同人 162-4

2009

川口正代司：微生物との共生　基礎生物学テキストシリーズ７　植物生理学　三村徹郎, 鶴見誠二 編著　化学同人 192-20337, 461-70

2008

斉藤勝晴、川口正代司：アーバスキュラー菌根共生系から根粒共生系への進化　共進化の生態学　種生物学会 文一総合出版 237-63

2007

川口正代司（古郡悦子取材・構成）：根における共生のいとなみ　朝日新聞社 141-60

2006

川口正代司：ミヤコグサで解き明かす菌根・根粒共生系の分子基盤　特集によせて　 蛋白質核酸酵素 51, 1015-21

2006

林誠、今泉（安楽）温子、川口正代司：共生シグナルの受容と共通シグナル伝達経路の分子遺伝学的解明　 蛋白質核酸酵素 51, 1030-7

2006

明石良、川口正代司、菅沼教生：ミヤコグサのリソース整備と共生窒素固定の分子的解明　バイオサイエンスとインダストリー 64, 23-27

2005

川口 正代司： 目でみるミヤコグサの形態学、改訂３版モデル植物の実験プロトコール、細胞工学別冊植物細胞工学シリーズ 秀潤社 16-7

2005

川口 正代司, 林 正紀, 原田 久也 ： マップペースクローニング、改訂３版モデル植物の実験プロトコール、細胞工学別冊植物細胞工学シリーズ 秀潤社 121-7