HPC (High Performance Computing)

1. Login to the HPC

ssh lscapozi@login.hpc.ncsu.edu

2. Change the working directory to a login node

cd /share/bitcpt/Fall2022/lscapozi

3. Create the following directories within the Portfolio directory

cd Portfolio

mkdir AlignedToTranscriptome

mkdir fastqc

mkdir salmon_align_quant

mkdir starindices

mkdir starOutputfiles

mkdir transcriptome

4. List out the directory to make sure these directories were all created

ll

5. Use the "tree" function to visualize the directories

tree