Final Student Portfolio

Logging in to the HPC

ssh UnityID@login.hpc.ncsu.edu

Navigating the HPC

pwd - checks location of current directory, pinpoints where you are currently at

ls - short list of current directory content

ll - long list of current directory content

cp - copy function followed by path of file to be copied and the final location

mv - move function, can be used to rename file copied

mkdir - make directory

rmdir - remove directory

rm - deletes or remove file

Getting Organized on the HPC

# In the UnityID directory, create these specific directories

mkdir At

mkdir Tom

mkdir Portfolio

# Create the following directories in Portfolio directory:

mkdir AlignedToTranscriptome

mkdir fastqc

mkdir salmon_align_quant

mkdir starindices

mkdir starOutputfiles

mkdir transcriptome

Saving files from HPC

Complete this step via Globus File Manager by setting a path to your personal computer