Methods and software

Methodology-oriented books edited by team members (with contributions from the lab)

• Žárský V, Cvrčková F (eds.): Plant Cell Morphogenesis - Methods and Protocols. Methods in Molecular Biology Vol. 1080, Springer, 2014.

• Cvrčková F, Žárský V (eds.): Plant Cell Morphogenesis - Methods and Protocols, 2nd edition. Methods in Molecular Biology Vol. 1992, Springer, 2019.

A crash course of entry-level sequence bioinformatics

A resource on Arabidopsis formins (no longer updated)

Locally produced software tools

QuACK - quantitative analysis of cytoskeletal kymograms

• Paper describing the method (Cvrčková and Oulehlová 2017)

• Download software and manual

COBALT alignment conversion to FASTA by Radek Bezvoda

• Launch utility here

Mcwreader by Radek Bezvoda

• Converts MACAW output *-MCW files to FASTA multiple alignment files.

• For more information on MACAW and *.MCW see our Orphanware collection page.

• Download this file, unzip into a directory and run Mcwreader.exe (Java required). 

Tools mirrored from elsewhere on a local server

SMS - the Sequence Manipulation Suite