creators: Françios Olivier

LabKit-powered (machine learning) CFU counter. Provides colony number and area estimates.

Next v: pixel size instruction, command to save summary table

creator: Françios Olivier

NOTE:  try ColonyCNTR first. A basic colony counter that can be used within Fiji. Currently most suitable for low titration CFU plates with well-separated colonies.

creator: Françios Olivier

A CellProfiler workflow used to count CellTracker Green-stained mammalian cells, CSV file output. 

creator: Françios Olivier

A CellProfiler workflow used to count DRAQ7-stained mammalian cells, CSV file output. 

creators: Françios Olivier, Volker Hilsenstein

A CellProfiler workflow that quantifies the area of Candida albicans hyphae (trapped, escaped) in a macrophage infection assay.

creators: Françios Olivier, Volker Hilsenstein

Instructions on how to create illumination-correction images within FIJI, and how these are used in Cellprofiler to remove image vignetting effects.