成果報告

総括班

Hagiya M, Konagaya A, Kobayashi S, Saito H, Murata S., Molecular robots with sensors and intelligence, Acc

Chem Res, 査読有, 47, 2014, 1681-1690.

A01計画班

Yasuda S, Hayakawa M, Onoe H, Takinoue M, Twisting microfluidics in a planetary centrifuge, Soft Matter, 査

読有, 13(11), 2017, 2141-2147.

Shrestha P, Jonchhe S, Emura T, Hidaka K, Endo M, Sugiyama H, Mao H, Confined Space Facilitates

G-quadruplex　Formation, Nature Nanotechnology , 査読有, 12, 2017, in press.

Yang Y, Tashiro R, Suzuki Y, Emura T, Hidaka K, Sugiyama H, Endo M, A Photoregulated DNA-Based Rotary

System And Direct Observation of Its Rotational Movement, Chemistry, A European Journal , 査読有, 23(16),

2017, 3979-3985.

Oi H, Fujita D, Suzuki Y, Sugiyama H, Endo M, Matsumura S, Ikawa Y, Programmable formation of catalytic

RNA triangles and squares by assembling modular RNA enzymes, The Journal of Biochemistry , 査読有,

161(5), 2017, 451-462.

Parr CJC, Katayama S, Miki K, Kuang Y, Yoshida Y, Morizane A, Takahashi J, Yamanaka S, Saito H, MicroRNA-302

switch to identify and eliminate undifferentiated human pluripotent stem cells, Sci. Rep. , 査読有, 6, 2016,

32532.

Karagiannis P, Fujita Y, Saito H, RNA-based gene circuits for cell regulation, Proceedings of the Japan

Academy, Ser. B, Physical and Biological Sciences, 査読有, 92（9）, 2016, 412-422.

Ohno H, Saito H, RNA and RNP as Building Blocks for Nanotechnology and Synthetic Biology, Prog Mol Biol

Transl Sci., 査読有, 139, 2016, 165-185.

Endo K, Hayashi K, Saito H, High-resolution Identification and Separation of Living Cell Types by Multiple

microRNA-responsive Synthetic mRNAs, Sci. Rep. , 査読有, 6, 2016, 21991.

石川大輔, 瀧ノ上正浩, 連載「DNA ナノテクノロジー」―構造をつくり，計算し，ナノロボットを動かす―：第2

回ナノテク材料としてのDNA, 現代化学, 査読有, 5, 2016, 48-53.

佐藤佑介, 瀧ノ上正浩, 野村 M. 慎一郎, BIOMOD: 分子ロボティクスの次世代育成大会, 生物物理, 査読無, vol.

56, no. 5, 2016, 290-292.

Ishikawa D, Suzuki Y, Kurokawa C, Ohara M, Morita M, Yanagisawa M, Kawano R, Endo M, Takinoue M, Self-

Assembled Microcapsule of Amphiphilic Janus DNA Nanoplates at the Water-Oil Interface, Proc microTAS,

査読有, 2016, 116-117(2C3-2).

Hayakawa M, Nagai KH, Onoe H, Takinoue M, Influence of asymmetry and driving forces on the propulsion

of bubble-propelled catalytic micromotors, Micromachines , 査読有, 7(12), 2016, 229.

Räz MH, Hidaka K, Sturla SJ, Sugiyama H, Endo M, Torsional Constraints of DNA Substrates Impact Cas9

Cleavage, Journal of the American Chemical Society, 査読有, 138(42), 2016, 13842-13845.

Yamagata Y, Emura T, Hidaka K, Sugiyama H, Endo M, Triple Helix Formation in a Topologically Controlled

DNA Nanosystem, Chemistry, A European Journal , 査読有, 22(16), 2016, 5494-5498.

Kuzyk A, Yang Y, Duan X, Stoll S, Govorov AO, Sugiyama H, Endo M, Liu N, A light-driven 3D plasmonic

nanosystem that translates molecular motion into reversible chiroptical function, Nature Communications ,

査読有, 7, 2016, 10591.

Shrestha P, Emura T, Koirala D, Hidaka K, Maximuck W, Endo M, Sugiyama H, Mao H, Mechanical Properties of

DNA Origami Nanoassemblies are Determined by Holliday Junction Mechanophores, Nucleic Acids Res., 査

読有, 44(14), 2016, 6574-6582.

Saha A, Kizaki S, De D, Endo M, Kim KK, Sugiyama H, Examining cooperative binding of Sox2 on DC5

regulatory element upon complex formation with Pax6 through excess electron transfer assay, Nucleic

Acids Res., 査読有, 44(14), 2016, e125.

Takeuchi Y, Endo M, Suzuki Y, Hidaka K, Durand G, Dausse E, Toulmé JJ, Sugiyama H, Single-molecule

observations of RNA-RNA kissing interactions in a DNA nanostructure, Biomater. Sci. , 査読有, 4(1), 2016,

130-135.

Nishida Y, Ohtsuki S, Araie Y, Umeki Y, Endo M, Emura T, Hidaka K, Sugiyama H, Takahashi Y, Takakura Y,

Nishikawa M, Self-assembling DNA hydrogel-based delivery of immunoinhibitory nucleic acids to immune

cells, Nanomedicine , 査読有, 12(1), 2016, 123-130.

遠藤　政幸, DNA オリガミの応用　構造から機能へ, 現代化学, 査読無, No. 544, 2016, 40-45.

Masamune Morita, Masahiro Takinoue, Capillary-based Centrifugal Microfluidic Device for Size-controllable

Formation of Monodisperse Microdroplets, J. Vis. Exp, 査読有, issue 108, 2016, e53860.

Masayuki Hayakawa, Masahiro Takinoue, Complex-shaped three- dimensional multi-compartmental

microparticles generated by diffusional and Marangoni microflows in centrifugally discharged droplets,

Sci. Rep. , 査読有, vol. 6, 2016, 20793.

石川　大輔, 瀧ノ上 正浩, ハイブリッド型分子ロボット～コンピュータ制御された人工細胞の構築～ , Molecular

Robotics News Letter, 査読有, No.16, 2016, p.9.

Saito H, Synthetic RNA technologies to control functions of mammalian cells, Yakugaku zasshi : Journal of

the Pharmaceutical Society of Japan, 査読有, 135(3), 2015, 399-404.

Ohno H, Osada E, Saito H, Design, assembly, and evaluation of RNA-protein nanostructures, Methods in

molecular biology (Clifton, N.J.) , 査読有, 129, 2015, 197-211.

Shibata T, Suzuki Y, Sugiyama H, Endo M, Saito H, Folding RNA-Protein Complex into Designed

Nanostructures, Methods in molecular biology (Clifton, N.J.), 査読有, 131, 2015, 169-179.

Miki K, Endo K, Takahashi S, Funakoshi S, Takei I, Katayama S, Toyoda T, Kotaka M, Takaki T, Umeda M, Okubo

C, Nishikawa M, Oishi A, Narita M, Miyashita I, Asano K, Hayashi K, Osafune K, Yamanaka S, Saito H, Yoshida Y,

Efficient Detection and Purification of Cell Populations Using Synthetic MicroRNA Switches, Cell stem cell,

査読有, 16(6), 2015, 699-711.

Morita M, Onoe H, Yanagisawa M, Ito H, Ichikawa M, Fujiwara K, Saito H, Takinoue M, Droplet-Shooting and

Size-Filtration (DSSF) Method for Synthesis of Cell-Sized Liposomes with Controlled Lipid Compositions,

Chembiochem : a European journal of chemical biology, 査読有, 16(14), 2015, 2029-2035.

Wroblewska L, Kitada T, Endo K, Siciliano V, Stillo B, Saito H, Weiss R, Mammalian synthetic circuits with RNA

binding proteins for RNA-only delivery, Nature biotechnology, 査読有, 33(8), 2015, 839-841.

Y. Yang, M. Goetzfried, K. Hidaka, M. You, W. Tan, H. Sugiyama, M. Endo, Direct visualization of walking

motions of a photo-controlled DNA nanomachine on the DNA nanostructure, Nano Letters, 査読有, 1, 2015,

6672-6676.

M. Endo, X. Xing, X. Zhou, T. Emura, K. Hidaka, B. Tuesuwan, H. Sugiyama, Single- Molecule Manipulation of

the Duplex Formation and Dissociation at the G- quadruplex/ i- motif Site in the DNA Nanostructure, ACS

Nano , 査読有, 9, 2015, 9922-9929.

Y. Suzuki, M. Endo, H. Sugiyama, Lipid bilayer-supported two-dimensional self-assembly of DNA origami

nanostructures, Nature Communications, 査読有, 6, 2015, 8052.

M. Endo Y. Takeuchi, Y. Suzuki, T. Emura, K. Hidaka, F. Wang, I. Willner, H. Sugiyama, Single-Molecule

Visualization of the Zn2+-Dependent DNAzyme Functions, Angewandte Chemie, International Edition, 査読有,

54, 2015, 10550-10554.

M. Endo, H. Sugiyama, Measuring chloride in live cells, Nature Nanotechnology, 査読有, 10, 2015, 569-570.

R. Tashiro, M. Iwamoto, H. Morinaga, T. Emura, K. Hidaka, M. Endo, H. Sugiyama, Linking Two DNA Duplexes

with a Rigid Linker for DNA Nanotechnology, Nucleic Acids Research, 査読有, 43, 2015, 6692-6700.

T. Yata, Y. Takahashi, K. Hidaka, H. Sugiyama, M. Endo, Y. Takakura, M. Nishikawa, Efficient amplification of

self-gelling polypod-like structured DNA by rolling circle amplification and enzymatic digestion, Scientific

Reports, 査読有, 5, 2015, 14979.

A. Rajendran, M. Endo, K. Hidaka, M.-P. Teulade-Fichou, J.-L. Mergny, H. Sugiyama, Small molecule binding

to G-hairpin and G-triplex: A new insight in anticancer drug design targeting G-rich regions, Chemical

Communications, 査読有, 51, 2015, 9181-9184.

Y. Suzuki, M. Endo, H. Sugiyama, Mimicking membrane-related biological events by DNA origami

nanotechnolog, ACS Nano, 査読有, 9, 2015, 3418-3420.

Y. Suzuki, M. Endo, H. Sugiyama, Studying RNAP-promoter interactions using atomic force microscopy,

Methods, 査読有, 86, 2015, 4-9.

K. Mohri, E. Kusuki, S. Ohtsuki, N. Takahashi, M. Endo, K. Hidaka, H. Sugiyama, Y. Takahashi, Y. Takakura, M.

Nishikawa, Self-assembling DNA dendrimer for effective delivery of immunostimulatory CpG DNA to

immune cells, Biomacromolecules, 査読有, 16, 2015, 1095-1101.

T. Shiomi, M. Tan, N. Takahashi, M. Endo, T. Emura, K. Hidaka, H. Sugiyama, Y. Takahashi, Y. Takakura, M.

Nishikawa, Atomic Force Microscopy Analysis of Orientation and Bending of Oligodeoxynucleotides in

Polypod-like Structured DNA, Nano Research, 査読有, 8, 2015, 3764-3771.

S. Ohtsuki, N. Matsuzaki, K. Mohri, M. Endo, T. Emura, K. Hidaka, H. Sugiyama, Y. Takahashi, Y. Takakura, M.

Nishikawa, Optimal Arrangement of Four Short DNA Strands for Delivery of Immunostimulatory Nucleic

Acids to Immune Cells, Nucleic Acid Theraputics , 査読有, 25, 2015, 245-253.

Masamune Morita, Masahiro Takinoue, Droplet-Shooting and Size-Filtration (DSSF) Method for Synthesis

of Cell-Sized Liposomes with Controlled Lipid Compositions, ChemBioChem, 査読有, vol. 16, no. 14, 2015,

PP.2029-2035.

Hitoyoshi Yamashita, Masahiro Takinoue, Generation of Monodisperse Cell-Sized Microdroplets using a

Centrifuge-Based Axisymmetric Co-Flowing Microfluidic Device, J. Biosci. Bioeng. , 査読有, vol.119, no., 2015,

pp.492-495.

Ken H. Nagai, Masahiro Takinoue, Self-propelled particle with rotationally asymmetric shape, Curr. Phys.

Chem., 査読有, vol. 5, no. , 2015, pp. 73-81.

Shoya Yasuda, Masahiro Takinoue, Generation Of Multi-helical Microfibers And Marble Microbeads Using

Orbital-rotation And Axial-spin Centrifuge, Proc. microTAS, 査読有, 2015, 1163-1165.

Saito H., Synthetic RNA technologies to control functions of mammalian cells, Yakugaku Zasshi , 査読有,

135(3), 2015, 399-404.

森田　雅宗, 杉浦　晴香, 瀧ノ上 正浩, Droplet Microfluidics による人工細胞モデルの構築, 日本流体力学会誌「な

がれ」, 査読無, vol.34, no.1, 2015, 11-14.

Endo K, Parr C, Saito H, Expanding the synthetic ribonucleoprotein world in cells, Nat Methods. , 査読有,

11(11), 2014, 1105-1106.

Osada E, Suzuki Y, Hidaka K, Ohno H, Sugiyama H, Endo M, Saito H., Engineering RNA-protein complexes with

different shapes for imaging and therapeutic applications, ACS Nano. , 査読有, 8(8), 2014, 8130-8140.

Hagiya M, Konagaya A, Kobayashi S, Saito H, Murata S., Molecular robots with sensors and intellige, Acc Chem

Res., 査読有, 47(6), 2014, 1681-1690.

M. Endo, Y. Takeuchi, T. Emura, K. Hidaka, H. Sugiyama, Preparation of chemically modified RNA origami

nanostructures, Chemistry A European Journal, 査読有, 20, 2014, 15330-15333.

T. Takenaka, M. Endo, Y. Suzuki, Y. Yang, T. Emura, K. Hidaka, T. Kato, T. Miyata, K. Namba, H. Sugiyama,

Photoresponsive DNA nanocapsule having an open/close system for capture and release of nanomaterials,

Chemistry A European Journal , 査読有, 20, 2014, 14951-14954.

A. Rajendran, M. Endo, K. Hidaka, N. Shimada, A. Maruyama, H. Sugiyama, A lock-and-key mechanism for the

controllable fabrication of DNA origami structures, Chemical Communications , 査読有, 50, 2014, 8743-

8746.

D. Koirala, P. Shrestha, T. Emura, K. Hidaka, S. Mandal, M. Endo, H. Sugiyama, H. Mao, Single-molecule

mechanochemical sensing using DNA origami nanostructures, Angewandte Chemie, International Edition ,

査読有, 53, 2014, 8137-8141.

M. Endo, S. Yamamoto, T. Emura, K. Hidaka, N. Morone, J. E. Heuser, H. Sugiyama, Helical DNA origami tubular

structures with various sizes and arrangements, Angewandte Chemie, International Edition , 査読有, 53,

2014, 7484-7490.

Y. Suzuki, M. Endo, C. Canas, S. Ayora, J. C. Alonso, H. Sugiyama, K. Takeyasu, Direct analysis of Holliday

junction resolving enzyme in a DNA origami nanostructure, Nucleic Acids Research, 査読有, 42, 2014, 7421-

7428.

S. Kizaki, Y. Suzuki, T. Takenaka, M. Endo, H. Sugiyama, AFM analysis of changes in nucleosome wrapping

induced by DNA epigenetic modification, Biomaterials Science , 査読有, 2, 2014, 1399-1403.

M. Endo, H. Sugiyama, Single-Molecule Imaging of Dynamic Motions of Biomolecules in DNA Origami

Nanostructures Using High-Speed Atomic Force Microscopy, Accounts of Chemical Research , 査読有, 47,

2014, 1645-1653.

S. Yamamoto, D. De, K. Hidaka, K-. K. Kim, M. Endo, H. Sugiyama, Single molecule visualization and

characterization of Sox2-Pax6 complex formation on a regulatory DNA element using a DNA origami

frame, Nano Letters, 査読有, 14, 2014, 2286-2292.

M. Sakai, Y. Suzuki, Evolution of Chemical Signals in ecological system evoked by the "cry-wolf" plants,

Artificial Life , 査読有, 14, 2014, 983-986.

Masamune Morita, Hiroaki Onoe, Miho Yanagisawa, Kei Fujiwara, Hirohide Saito, Masahiro Takinoue, The

rapid synthesis of cell-sized liposomes by centrifuge-based microfluidic device, Proceedings of The 18th

International Conference on Miniaturized Systems for Chemistry and Life Sciences (microTAS2014) , 査読有,

2014, 336-338.

安田　翔也, 早川　雅之，瀧ノ上 正浩, 二重らせん構造を有するマイクロゲルファバーの生成手法の構築, 化学と

マイクロ・ナノシステム, 査読無, vol.13, no.2, 2014, 40-41.

瀧ノ上 正浩, 細胞スケールの非平衡系における自己秩序化：自律運動と自律振動反応, 高分子, 査読無, vol.63,

no.6, 2014, 388-389.

Shunnichi Kashida, Hirohide Saito, A three-dimensional design strategy for a protein-responsive shRNA

switch, Methods Mol Biol., 査読有, 1111, 2014, 269-286.

Kei Endo, Hirohide Saito, Engineering protein-responsive mRNA switch in mammalian cells, Methods Mol

Biol. , 査読有, 1111, 2014, 183-196.

Hirohide Saito, RNA-protein nanotechnology & synthetic biology, Seikagaku , 査読無, 86（1）, 2014, 81-85.

A. Rajendran, M. Endo, K. Hidaka, H. Sugiyama, Direct and Single-Molecule Visualization of the Solution-State

Structures of G-Hairpin and G-Triplex Intermediates, Angewandte Chemie, International Edition , 査読有,

53(16), 2014, 4107-4012.

Y. Yang, M. Endo, Y. Suzuki, K. Hidaka, H. Sugiyama, Direct Observation of the Dual-Switching Behaviours

Corresponding to the State Transition in a DNA Origami, Chemical Communications , 査読有, 50(32), 2014,

4211-4213.

Y. Suzuki, M. Endo, Y. Yang, H. Sugiyama, Dynamic Assembly/Disassembly Processes of Photoresponsive

DNA Origami Nanostructures Directly Visualized on a Lipid Membrane Surface, Journal of the American

Chemical Society , 査読有, 136(5), 2014, 1714-1717.

Y. Suzuki, M. Endo, Y. Katsuda, K. Ou, K. Hidaka, H. Sugiyama, DNA Origami Based Visualization System for

Studying Site-Specific Recombination Events, Journal of the American Chemical Society , 査読有, 136(1),

2014, 211-218.

A. Rajendran, M. Endo, H. Sugiyama, State-of-the Art High Speed Atomic Force Microscopy for the

Investigation of Single-Molecular Dynamics of Proteins, Chemical Reviews , 査読有, 114(2), 2014, 1493-

1520.

A. Rajendran, M. Endo, K. Hidaka, P. L. T. Tran, M-P. Teulade-Fichou, J-L. Mergny, H. Sugiyama, G-quadruplexbinding

ligand-induced DNA synapsis Inside a DNA Origami Frame, RSC Advances , 査読有, 4, 2014, 6346-

6355.

Kei Endo, Karin Hayashi, Tan Inoue, Hirohide Saito, A versatile cis-acting inverter module for　synthetic

translational switches, Nature Communications , 査読有, 4, 2013, 2393.

Kei Endo, James A. Stapleton, Karin Hayashi, Hirohide Saito, Tan Inoue, Quantitative and stimulataneous

translational control of distinct mammalian mRNAs, Nucleic Acid Res ., 査読有, 41(13), 2013, e135.

Hirohisa Ohno, Eriko Osada, Tan Inoue, Hirohide Saito, Synthetic RNA–Protein Nanostructures and Their

Potential Applications, RNA Nanotechnology and Therapeutics , 査読有, 1, 2013, 303-312.

齊藤　博英, 実験進化・人工システム構築からみえてくるRNA/RNP の新機能, 実験医学, 査読有, 31（7）,

2013, 61-67.

遠藤　慧, 齊藤　博英, 複数の哺乳類mRNA の同時かつ特異的な翻訳チューニング法, 実験医学, 査読有, 32（4）,

2013, 595-599.

齊藤　博英, 人工RNA を用いたナノバイオエンジニアリング, 超精密 (ULTRA PRECISION) , 査読有, 19, 2013,

38-43.

A. Rajendran, M. Endo, K. Hidaka, P. L. T. Tran, J-L. Mergny, R. J. Gorelick, H. Sugiyama, HIV-1 Nucleocapsid

Proteins as Molecular Chaperones for Tetramolecular Antiparallel G-Quadruplex Formation, Journal of the

American Chemical Society , 査読有, 135(49), 2013, 18575-18585.

M. Endo, M. Inoue, Y. Suzuki, C. Masui, H. Morinaga, K. Hidaka, H. Sugiyama, Regulation of B-Z Conformational

Transition and Complex Formation with a Z-form-binding Protein by Introduction of Constraint to Doublestranded

DNA using DNA Nanoscaffold, Chemistry A European Journal , 査読有, 19(50), 2013, 16887-16890.

A. Rajendran, M. Endo, K. Hidaka, P. L. T. Tran, J-L. Mergny, H. Sugiyama, Controlling the Stoichiometry and

Strand Polarity of a Tetramolecular G-quadruplex Structure by Using a DNA Origami Frame, Nucleic Acids

Research , 査読有, 41(18), 2013, 8738-8747.

Yasuhiro Suzuki, Megumi Sakai, Modeling “info-chemical” Mediated Ecological System by using Multi Agent

System, ICAART , 査読有, 1, 2013, 218-323.

Yasuhiro Suzuki, Harness the Nature for Computation, Proceedings in Information and Communications

Technology, Springer Verlag , 査読有, 6, 2013, 44-49.

早川　雅之，尾上　弘晃，永井　健， 瀧ノ上 正浩, マランゴニ流と拡散流を利用した複雑形状マイクロハイドロ

ゲル粒子高速生成システムの開発, 化学とマイクロ・ナノシステム, 査読無, vol.13,no.1, 2013, 29-30.

早川　雅之，尾上　弘晃，永井　健，瀧ノ上 正浩, 異方性をもつ複雑形状マイクロハイドロゲル粒子作製システ

ムの開発, 電気学会研究会資料（バイオ・マイクロシステム研究会） , 査読無, No.BMS-13-043, 2013, 41-44.

Satoshi Murata, Akihiko Konagaya, Satoshi Kobayashi, Hirohide Saito, Masami Hagiya, Molecular Robotics: A

New Paradigm for Artifacts, New Generation Computing , 査読有, 1, 2013, 27-45.

Tomoaki Hara, Hirohide Saito and Tan Inoue, Directed evolution of a synthetic RNA-protein module to create

a new translational switch, Chemical Communications (Camb) , 査読有, 49(37), 2013, 3833-3835.

M. Endo, S. Yamamoto, K. Tatsumi, T. Emura, K. Hidaka, H. Sugiyama, RNA-templated DNA origami structures,

Chemical Communications , 査読有, 49, 2013, 2879-2881.

A. Rajendran, M. Endo, K. Hidaka, H. Sugiyama, Direct and real-time observation of rotary movement of a

DNA nanomechanical device, Journal of the American Chemical Society , 査読有, 135, 2013, 1117-1123.

A. Rajendran, M. Endo, K. Hidaka, H. Sugiyama, Control of the two-dimensional crystallization of DNA origami

with various loop arrangements, Chemical Communications , 査読有, 49, 2013, 686-688.

M. Endo, Y. Yang, H. Sugiyama, DNA origami technology for biomaterials applications, Biomaterials Science , 査

読有, 1, 2013, 347-360.

S. Dhakal, H. Mao, A. Rajendran, M. Endo, H. Sugiyama, G-quadruplex nanostructures probed at the single

molecular level by force-based methods, Guanine quartets: Structure and application , 査読有, 1, 2013, 73-85.

M. Sakai, Y. Suzuki, Modeling “info-chemical” Mediated Ecological System by using Multi Agent System,

Fifth International Conference on Agents and Artificial Intelligence, ICAART , 査読有, 1, 2013, 318-323.

Y. Suzuki, Harness the Nature for Computation, Natural Computing and Beyond (Springer Verlag) , 査読有, 6,

2013, 47-70.

James A. Stapleton, Kei Endo, Yoshihiko Fujita, Karin Hayashi, Masahiro Takinoue, Hirohide Saito, and Tan Inoue,

Feedback Control of Protein Expression in Mammalian Cells by Tunable Synthetic Translational Inhibition,

ACS Synthetic Biology , 査読有, 1(3), 2012, 83-88.

Shunnichi Kashida, Tan Inoue and Hirohide Saito, Three-dimensionally designed protein-responsive RNA

devices for cell signaling regulation, Nucleic Acids Research , 査読有, 40(18), 2012, 9369-9378.

Y. Yang, M. Endo, K. Hidaka, H. Sugiyama, Photo-controllable DNA Origami Nanostructures Assembling into

Predesigned Multiorientational Patterns, Journal of the American Chemical Society , 査読有, 134, 2012,

20645-20653.

M. Endo, Y. Yang, Y. Suzuki, K. Hidaka, H. Sugiyama, Single-Molecule Visualization of the Hybridization and

Dissociation of Photoresponsive Oligonucleotides and Their Reversible Switching Behavior in a DNA

Nanostructure, Angewandte Chemie, International Edition , 査読有, 51, 2012, 10518-10522.

M. Endo, K. Tatsumi, K. Terushima, Y. Katsuda, K. Hidaka, Y. Harada, H. Sugiyama, Direct Visualization of the

Movement of a Single T7 RNA Polymerase and Transcription on a DNA Nanostructure, Angewandte Chemie,

International Edition , 査読有, 51, 2012, 8778-8782.

K. Mohri, M. Nishikawa, N. Takahashi, N. Matsuoka, M. Endo, K. Hidaka, H. Sugiyama, Y. Takahashi, Y. Takakura,

Design and development of nano-sized DNA assemblies in polypod-like structures as efficient vehicle for

immunostimulatory CpG motifs to immune cells, ACS Nano , 査読有, 6, 2012, 5931-5940.

T. Yoshidome, M. Endo, G. Kashiwazaki, K. Hidaka, T. Bando, H. Sugiyama, Sequence-Selective Single-Molecule

Alkylation with a Pyrrole-Imidazole Polyamide Visualized in a DNA Nanoscaffold, Journal of the American

Chemical Society, 査読有, 134, 2012, 4654-4660.

M. Endo, R. Miyazaki, T. Emura, K. Hidaka, H. Sugiyama, Transcription Regulation System Mediated by

Mechanical Operation　of DNA Nanostructure, Journal of the American Chemical Society , 査読有, 134, 2012,

2852-2855.

A. Rajendran, M. Endo, H. Sugiyama, Structure and Functional Analysis of Proteins by High-Speed Atomic

Force Microscopy, Advances in Protein Chemistry and Structural Biology , 査読有, 87, 2012, 5-55.

S. Wickham, J. Bath, Y. Katsuda, M. Endo, K. Hidaka , H. Sugiyama, A. J. Turberfield, A DNA-based molecular

motor that can navigate a network of tracks, Nature Nanotechnology , 査読有, 7, 2012, 169-173.

E. Nakata, L. F. Fong, C. Uwatoko, S. Kiyonaka, Y. Mori, Y. Katsuda, M. Endo, H. Sugiyama, T. Morii, Zinc finger

proteins as the adaptor for locating proteins at specific addresses of DNA origami, Angewandte Chemie,

International Edition , 査読有, 51, 2012, 2421-2424.

A. Rajendran, M. Endo, H. Sugiyama, Single-Molecule Analysis Using DNA Origami, Angewandte Chemie,

International Edition , 査読有, 51, 2012, 874-890.

A. Rajendran, M. Endo, H. Sugiyama, DNA Origami: Synthesis and Self-Assembly, Current Protocols in Nucleic

Acid Chemistry , 査読有, 48, 2012, 12.9.1-12.9.18.

Shinya K, Gao Y, Cilloniz C, Suzuki Y, Fujie M, Deng G, Zhu Q, Fan S, Makino A, Muramoto Y, Fukuyama S,

Tamura D, Noda T, Eisfeld AJ, Katze, MG, Chen H, Kawaoka Y, Integrated Clinical, Pathologic, Virologic, and

Transcriptomic Analysis of H5N1 Influenza Virus-Induced Viral Pneumonia in the Rhesus Macaque, Journal

of Virology , 査読有, 86, 2012, 6055-6066.

M. Furukawa, Y. Suzuki, Honey Bee Optimization Based on Mimicry of Threshold Regulation in Honey Bee

Foraging, Smart Innovation, systems and technologies , 査読有, 14, 2012, 307-316.

古川　まき, 鈴木　泰博, 蜜蜂の蜜源選択における閾値調整機能を模した 最適化アルゴリズム, 日本知能情報ファ

ジー学会誌, 査読有, 24, 2012, 1090-1103.

Y. Suzuki, Behaviors of Chemical Reactions with Small Number of Molecules, Lecture Notes in Computer

Science , 査読有, 5777, 2012, 394-401.

A01公募班

25104503 根本　直人

Nemoto N, Yoshikawa Y, Miyajima T, Kobayashi S, Functional Analysis of Liposome Anchoring Peptide

Selected by Complementary DNA display (cDNA display), Peptide Science 2014 (Edited by Akira Otaka) , 査読

有, 51, 2015, 71-72.

Nemoto N, Fukushima T, Kumachi S, Suzuki M, Nishigaki K, Kubo T, Versatile C-terminal specific biotinylation

of proteins using both a puromycin-linker and a cell-free translation system for studying high-throughput

protein-molecule interactions, Anal Chem. , 査読有, 86, 2014, 8535-8540.

根本　直人、望月　佑樹、上野　真吾, cDNA display による分子デザイン－ mRNA display(in vitro virus) から

cDNA display へ－ , 生物物理, 査読有, 53, 2013, 250-253.

25104504/15H00798 多田隈 尚史

Tadakuma H, Masubuchi T, Ueda T, RNA Study Using DNA Nanotechnology, Prog Mol Biol Transl Sci, 謝辞記載

有, 139, 2016, 121-163.

Yao C, Sasaki HM, Ueda T, Tomari Y, Tadakuma H, Single-molecule analysis of the target cleavage reaction by

Drosophila RNAi enzyme complex, Molecular Cell , 査読有, 59, 2015, 125-132.

25104505 庄田　耕一郎

Anton Kan, Yoko Sakai, Koh-ichiroh Shohda, and Akira Suyama, A DNA based molecular logic gate capable of a

variety of logical operations, Natural Computing, 査読有, 13, 2014, 573-581.

25104506 寺井　琢也

寺井　琢也, 光増感剤を用いた汎用的センサーシステムの開発, Molecular Robotics Research Group News

Letter , 査読無, 11, 2015, 4-4.

Umeda N, Takahashi H, Kamiya M, Ueno T, Komatsu T, Terai T, Hanaoka K, Nagano T, Urano Y, Boron

Dipyrromethene As a Fluorescent Caging Group for Single- Photon Uncaging with Long-Wavelength Visible

Light, ACS CHEM BIOL , 査読有, 9 , 2014, 2242-2246.

Togashi M, Terai T, Kojima H, Hanaoka K, Igarashi K, Hirata Y, Urano Y, Nagano T, Practical fluorescence

detection of acrolein in human plasma via a two-step tethering approach, CHEM COMMUN , 査読有, 50 ,

2014, 14946-14948.

Ichikawa Y, Kamiya M, Obata F, Miura M, Terai T, Komatsu T, Ueno T, Hanaoka K, Nagano T, Urano Y, Selective

Ablation of b-Galactosidase-Expressing Cells with a Rationally Designed Activatable Photosensitizer,

ANGEW CHEM INT EDIT, 査読有, 53 , 2014, 6772-6775.

25104514/15H00811 村上　達也

Higashino T, Nakatsuji H, Fukuda R, Okamoto H, Imai H, Matsuda T, Tochio H, Shirakawa M, Tkachenko NV,

Hashida M, Murakami T, Imahori H, Hexaphyrin as a potential theranostic dye for photothermal therapy and

19F magnetic resonance imaging, ChemBioChem , 査読有, 18(10), 2017, 951-959.

Takano Y, Numata T, FujishimaK, Miyake K, Nakano K, Grove WD, Inoue R, Kengaku M, Sakaki S, Mori Y,

Murakami T, Imahori H, Optical control of neuronal firing via photoinduced electron transfer in donoracceptor

conjugates, Chem. Sci. , 査読有, 7, 2016, 3331–3337.

Kim H, Okamoto H, Felber AE, Polomska A, Morone N, Heuser JE, Leroux JC, Murakami T, Polymer-coated pHresponsive

high-density lipoproteins, J. Contr. Res. , 査読有, 228, 2016, 132–140.

Maeda Y, Takehara Y, Yamada M, Suzuki M, Murakami T, Control of the photoluminescence properties of

single-walled carbon nanotubes by alkylation and subsequent thermal treatment, Chem. Commun. , 査読有,

51, 2015, 13462-13465.

Koseki Y, Ikuta Y, Murakami T, Onodera T, Oikawa H, Cong L, Tada H, Gonda K, Ohuchi N, Kasai H, Cytotoxicity

of pure nanodrugs of SN-38 and podophyllotoxin dimers in human cancer HepG2, KPL-4 and MCF-7 cellsc,

Mol. Cryst. Liq. Cryst. , 査読有, 622, 2015, 1-5.

Murakami T, Okamoto H, Kim H, Internalization of high-density lipoproteins bearing arginine-rich peptides,

Chem. Lett. , 査読有, 44, 2015, 336-338.

Murakami T, Okamoto H, Kim H, Structural and functional changes in high-density lipoprotein induced by

chemical modification, Biomater. Sci. , 査読有, 3, 2015, 712-715.

Nakatsuji H, Numata T, Morone N, Kaneko S, Mori Y, Imahori H, Murakami T, Thermosensitive ion channel

activation in single neuronal cells by using surface-engineered plasmonic nanoparticles, Anger. Chem. Int.

Ed. , 査読有, 54, 2015, 11725-11729.

Hashida Y, Tanaka H, Zhou S, Kawakami S, Ymashita F, Murakami T, Umeyama T, Imahori H, Hashida M,

Photothermal ablation of tumor cells using a single-walled carbon nanotube-peptide composite, J. Control.

Release, 査読有, 173 , 2014, 59-66.

Murakami T, Nakatsuji H, Morone N, Heuser JE, Ishidate F, Hashida M, Imahori H, Mesoscopic Metal

Nanoparticles Doubly Functionalized with Natural and Engineered Lipidic Dispersants for Therapeutics,

ACS Nano , 査読有, 8 (7),2014, 7370–7376.

Nakamura M, Tahara Y, Murakami T, Iijima S, Yudasaka M, Gastrointestinal actions of orally-administered

single-walled carbon nanohorns, Carbon , 査読有, 69 , 2014, 409-416.

Zhou S, Hashida Y, Kawakami S, Mihara J, Umeyama T, Imahori H, Murakami T, Yamashita F, Hashida M,

Preparation of immunostimulatory single-walled carbon nanotube/CpG DNA complexes and evaluation of

their potential in cancer immunotherapy, Int J Pharm., 査読有, 471(1-2), 2014, 214-223.

Kohara K, Yamamoto S, Seinberg L, Murakami T, Tsujimoto M, Ogawa T, Kurata H, Kageyama H, Takano M,

Caboxylated SiO2-coated alpha-Fe nanoparticles: towards a versatile platform for biomedical applications,

Chem. Commun. , 査読有, 49 (25), 2013, 2563-2565.

Mathew S, Murakami T, Nakatsuji H, Okamoto H, Morone N, Heuser JE, Hashida M, Imahori H, Exclusive

photothermal heat generation by a bis(naphthalocyanine) complex and inclusion into modified highdensity

lipoprotein nanocarriers for therapeutic applications, ACS Nano , 査読有, 7 , 2013, 8908-8916.

Ikuta Y, Koseki Y, Murakami T, Ueda M, Oikawa H, Kawai H, Fabrication of pure nanodrugs of podophyllotoxin

dimer and their anticancer actiivty, Chem. Lett. , 査読有, 42 , 2013, 900-901.

Maeda Y, Higo J, Amagai Y, Matsui J, Ohkubo K, Yoshigoe Y, Hashimoto M, Eguchi K, Yamada M, Hasegawa

T, Sato Y, Zhou J, Lu J, Miyashita T, Fukuzumi S, Murakami T, Tohji K, Nagase S, Akasaka S, Helicity-selective

photoreaction of single-walled carbon nanotubes with organosulfur compounds in the presence of oxygen,

J. Am. Chem. Soc. , 査読有, 135 , 2013, 6356-6362.

25104518 井川　善也

Ishikawa J, Furuta H, Ikawa Y, RNA Tectonics (tectoRNA) for RNA nanostructure design and its application in

synthetic biology, WIREs RNA , 査読有, 4, 2013, 651-664.

Tanaka T, Furuta H, Ikawa Y, Installation of orthogonality to the interface that assembles two modular

domains in the Tetrahymena group I ribozyme, J. Biosci. Bioeng. , 査読有, 117 (4), 2014, 407-412.

Matsumura S, Ikawa Y, Artificial ligase ribozymes isolated by a “design and selection” strategy, Methods in

Molecular Biology , 査読有, 1316, 2015, 113-125.

Matsumura S, Ito T, Tanaka T, Furuta H, Ikawa Y, Modulation of group I ribozyme activity by cationic

porphyrins, Biology (Basel) , 査読有, 4, 2015, 251-263.

井川　善也, 集積ナノ構造と生体分子デバイス構築に向けたモジュール型RNA の人工改変, ファルマシア ( 日本

薬学会会誌) , 査読有, 51, 2015, 42-46.

15H00803 川野　竜司

Hiratani M, Ohara M, Kawano R, Amplification and quantification of an antisense oligonucleotide from

target microRNA using programmable DNA and a biological nanopore, Anal Chem. , 査読有, 89(4), 2017,

2312-2317.

Ohara M, Takinoue M, Kawano R, Nanopore Logic Operation with DNA to RNA Transcription in a Droplet

System, ACS Synthetic Biology , 査読有, 6（7）, 2017, 1427-1432,.

Yasuga H, Kawano R, Takinoue M, Tsuji Y, Osaki T, Kamiya K, Miki N, Takeuchi S, Logic Gate Operation by DNA

Translocation through Biological Nanopores, PLoS One , 査読有, 11, 2016, e0149667.

Watanabe H, Kawano R, Channel Current Analysis for Pore-forming　Properties of an Antimicrobial

Peptide, Magainin 1, using the Droplet Contact Method, ANAL SCI , 査読有, 32（１）, 2016, 57-60.

Hiratani M, Ohara M, Kawano R, Autonomous Diagnosis and Therapy: miRNA Detection and Drug Release

using Programmable DNA and Biological Nanopore, Proceedings of MicroTAS , 査読有, 1, 2015, 906-908.

15H00812 山下　高廣

Kojima K, Matsutani Y, Yamashita T, Yanagawa M, Imamoto Y, Yamano Y, Wada A, Hisatomi O, Nishikawa K,

SakuraiK, Shichida Y, Adaptation of cone pigments found in green rods for scotopic vision through a single

amino acid mutation, Proc. Natl. Acad. Sci. USA , 査読有, 114(21), 2017, 5437-5442.

Okitsu T, Matsuyama T, Yamashita T, Ishizuka T, Yawo H, Imamoto Y, Shichida Y, Wada A, Alternative Formation

of Red-Shifted Channelrhodopsins: Noncovalent Incorporation with Retinal-Based Enamine-Type Schiff

Bases and Mutated Channelopsin, Chem Pharm Bull , 査読有, 65(4), 2017, 356-358.

Kojima K, Yamashita T, Imamoto Y, Kusakabe TG, Tsuda M, Shichida Y, Evolutionary Steps Involving

Counterion Displacement in a Tunicate Opsin, Proc. Natl. Acad. Sci. USA , 査読有, 114(23), 2017, 6028-6033.

Yue WW, Frederiksen R, Ren X, Luo DG, Yamashita T, Shichida Y, Cornwall MC, anYau KW, Spontaneous

activation of visual pigments in relation to openness/closedness of chromophore-binding pocket, Elife , 査

読有, 6, 2017, e18492.

Kato M, Sugiyama T, Sakai K, Yamashita T, Fujita H, Sato K, Tomonari S, Shichida Y, Ohuchi H, Two Opsin

3-Related Proteins in the Chicken Retina and Brain: A TMT-Type Opsin 3 Is a Blue-Light Sensor in Retinal

Horizontal Cells, Hypothalamus, and Cerebellum, PLoS One , 査読有, 11, 2016, e0163925.

Sato K, Yamashita T, Haruki Y, Ohuchi H, Kinoshita M, Shichida Y, Two UV-Sensitive Photoreceptor Proteins,

Opn5m and Opn5m2 in Ray-Finned Fish with Distinct Molecular Properties and Broad Distribution in the

Retina and Brain, PLoS One , 査読有, 11, 2016, e0155339.

Sakai K, Yamashita T, Imamoto Y, Shichida Y, Diversity of active states in TMT opsins, PLoS One , 査読有, 10,

2015, e0141238.

Yanagawa M, Kojima K, Yamashita T, Imamoto Y, Matsuyama T, Nakanishi K, Yamano Y, Wada A, Sako Y, Shichida Y,

Origin of the low thermal isomerization rate of rhodopsin chromophore, Scientific Reports , 査読有, 5, 2015,

11081.

15H00813 真嶋　司

Masuda K, Ripley B, Nyati K, Dubey P, Zaman M, Hanieh H, Hoga M, Yamashita K, Standley D, Mashima T,

Katahira M, Okamoto T, Matsuura Y, Takeuchi O, Kishimoto T, Arid5a regulates naive CD4+ T cell fate through

selective stabilization of Stat3 mRNA, Journal of Experimental Medicine, 査読有, 213, 2016, 605-619.

Yoneda R, Suzuki S, Mashima T, Kondo K, Nagata T, Katahira M, Kurokawa R, The binding specificity of

translocated in liposarcoma/fused in sarcoma with lncRNA transcribed from the promoter region of cyclin

D1, Cell and Bioscience, 査読有, 6, 2016, 4.

Takezawa Y, Nishiyama K, Mashima T, Katahira M, Shionoya M, Bifacial Base-Pairing Behaviors of

5-Hydroxyuracil DNA Bases Both through Hydrogen Bonding and Metal Coordination, Chemistry , 査読有,

21, 2015, 14713-14716.

Kusano S, Ishiyama S, Lam SL, Mashima T, Katahira M, Miyamoto K, Aida M, Nagatsugi F, Crosslinking reactions

of 4-amino-6-oxo-2-vinylpyrimidine with guanine derivatives and structural analysis of the adducts,

Nucleic Acids Res. , 査読有, 43(16), 2015, 7717-7730.

Yamaoki Y, Nagata T, Mashima T, Katahira M, K+-responsive off-to-on switching of hammerhead ribozyme

through dual G-quadruplex formation requiring no heating and cooling treatment, Biochemical and

biophysical Research Communications , 査読有, 468, 2015, 27-31.

15H00826 藤原　慶

Fujiwara K, Doi N, Biochemical preparation of cell extract for cell-free protein synthesis without physical

disruption, PLOS ONE , 査読有, 11(4), 2016, e0154614.

15H00828 臼井　健二

Tominaga Y, Usui K, Hirata A, Kitagawa A, Ito H, Nokihara K, Development of Peptide Microarray to Detect the

Protein in Saliva for Periodontal Disease Test, Peptide Science 2016, 査読有, 2016, 2017, 131-132.

Sekiya Y, Watanabe H, Usui K, Kawano R, A Systematic Study on Molecular Mechanism of Pore-Forming

Peptides for Discovering Antimicrobial Medicine, Proc microTAS, 査読有, MicroTAS 2016, 2016, 595-596.

Usui K, Ozaki M, Yamada A, Hamada Y, Tsuruoka T, Imai T, Tomizaki KY, Site-Specific Control of Multiple

Mineralizations Using a Designed Peptide and DNA , Nanoscale , 査読有, 8, 2016, 17081-17084 .

臼井　健二, 富﨑　欣也, 有機- 無機ハイブリッド材料創製を指向した人工ペプチドを用いたミネラリゼーション

の制御, 化学工業, 査読無, 67, 2016, 721-728.

Usui K, Tomizaki KY, Mihara H, A Cell Microarray Format: A Peptide Release System Using a Photo-Cleavable

Linker for Cell Toxicity and Cell Uptake Analysis, Methods. Mol. Biol. , 査読有, 1352, 2016, 199-210.

Usui K, Development of Designed Peptides with Secondary Structure for Use in Nanobiotechnology, Peptide

Science 2015 , 査読有, 2015, 2016, 5-8.

Ozaki M, Nagai K, Nishiyama H, Tsuruoka T, Fujii S, Endoh T, Imai T, Tomizaki KY, Usui K, Site-Specific Control

of Silica Mineralization on DNA Using a Designed Peptide, Chem. Commun. , 査読有, 52, 2016, 4010-4013.

B01 計画班

Suzuki Y, Taniguchi E, Molecular Artificial Intelligence by using DNA reactions, Proc. Of International

Conference on Artificial Life and Robotics 2017 , 査読有, 2017, 591-594.

Suzuki Y, Neural Networks by using Self-Reinfocement Reactions, Proc. Of International Conference on

Artificial Life and Robotics 2017 , 査読有, 2017, 595-598.

Suzuki Y, Artificial Chemistry by Sound Waves, Proc. Of International Conference on Artificial Life and

Robotics 2017 , 査読有, 2017, 599-602.

Fujimoto K, Toyosato K, Nakamura S, Sakamoto T, RNA fluorescence in situ hybridization using

3-cyanovinylcarbazole modified oligodeoxyribonucleotides as photo-cross-linkable probes, Bioorg. Med.

Chem. Lett, 査読有, 26, 2016, 5312-5314.

Nakamura S, Kawabata H, Fujimoto K, Sequence-specific DNA photo-splitting of 3-cyanovinylcarbazole using

DNA strand displacement, ChemBioChem , 査読有, 17, 2016, 1499-1503.

Nakamura S, Kawabata H, Muramatsu H, Fujimoto K, Effect of 5-substitution of uracil base in DNA photocross-

linking using 3-cyanovinylcarbazole, Chem. Lett , 査読有, 45(8), 2016, 887-889.

Fujimoto K, Furusawa M, Nakamura S, Sakamoto T, UVA responsive anticancer prodrugs based on photoinduced

electron injection into oligonucleotide having 5-halouracils, Chem. Lett , 査読有, 45(9), 2016,

1078–1080.

Kandatsu D, Cervantes-Salguero K, Kawamata I, Hamada S, Nomura SM, Fujimoto K, Murata S, Reversible Gel-Sol

Transition of Photo-Responsive DNA Gel, ChemBioChem , 査読有, 17(12), 2016, 1118–1121.

Yamauchi Y, Uehara T, Kijima S, Yamashita M, Plane Formation by Synchronous Mobile Robots in the Three

Dimensional Euclidean Space, Journal of the ACM (JACM) , 査読有, 64（３）, 2017. in press.

Das S, Flocchini P, Prencipe G, Santoro N, Yamashita M, Autonomous mobile robots with lights, THEOR.

COMPUT. SCI, 査読有, Volume 609, Part 1, 2016, 171-184.

Uehara T, Yamauchi Y, Kijima S, Yamashita M, Plane Formation by Semi-synchronous Robots in the Three

Dimensional Euclidean Space, Proceedings of the 18th International Symposium on Stabilization , Safety, and

Security of Distributed Systems (SSS 2016) , 査読有, 2016, 383-398.

Yakami T, Yamauchi Y, Kijima S, Yamashita M, Searching for an Evader in an Unknown Graph by an Optimal

Number of Searchers, Proceedings of the 18th International Symposium on Stabilization, Safety, and Security

of Distributed Systems (SSS 2016) , 査読有, 2016, 399-414.

Yamauchi Y, Uehara T, Yamashita M, Brief Announcement: Symmetricity in 3D-space---Characterizing

Formable Patterns by Synchronous Mobile Robots, Proceedings of the 30th International Symposium on

Distributed Computing (DISC 2016) , 査読有, 2016, 471-473.

Yamauchi Y, Uehara T, Yamashita M, Brief Announcement: Pattern Formation Problem for Synchronous

Mobile Robots in the Three Dimensional Euclidean Space, Proceedings of the 35th ACM SIGACT-SIGOPS

Symposium on Principles of Distributed Computing , 査読有, 2016, 447-449.

Flocchini P, Santoro N, Viglietta G, Yamashita M, Universal Systems of Oblivious Mobile Robots, Proceedings

of the 23rd International Colloquium on Structural Information and Communication Complexity , 査読有,

2016, 242-257.

Lamani A, Yamashita M, Realization of Periodic Functions by Self-stabilizing Population Protocols with

Synchronous Handshakes, Proceedings of 5th International Conference on Theory and Practice of Natural

Computing (TPNC2016) , 査読有, TPNC 2016, 2016, 21-33.

Rose JA, Komiya K, Analysis and design of a single-molecule DNA nanodevice for thermal band-pass filters,

Proceedings of the 11th IEEE Annual International Conference on Nano/Micro Engineered and Molecular

Systems (NEMS) , 査読有, 2016, (6 pages).

Rose JA, Komiya K, Kobayashi S, Engineering multistate DNA molecules: a tunable thermal band-pass filter,

Micro & Nano Letters , 査読有, 11(10), 2016, 595-601.

小宮 　健, ＤＮＡナノマシン, 現代化学, 査読無, 548, 2016, 32-35.

Masami Hagiya, Nathanael Aubert-Kato, Shaoyu Wang, Satoshi Kobayashi, Molecular computers for molecular

robots as hybrid systems, Theoretical Computer Science , 査読有, Volume 632, 2016, Pages 4-20.

Shigetaka Nakamura, Kenzo Fujimoto, Photo-cross-linking using trifluorothymidine and

3-cyanovinylcarbazole induced large shifted 19F MR signal, Chemical Communications , 査読有, 51, 2015,

11765 - 11768.

Takashi Sakamoto, Yuya Tanaka, Kenzo Fujimoto, DNA Photo-cross-linking using 3-Cyanovinylcarbazole

Modified Oligonucleotide with Threoninol Linker, Organic Letters , 査読有, 17, 2015, 936 - 939.

Takashi Sakamoto, Minako Ooe, Kenzo Fujimoto, Critical Effect of Base Pairing of Target Pyrimidine on the

Inter-strand Photo-cross-linking of DNA via 3-Cyanovinylcarbazole Nucleoside, Bioconjugate Chemistry , 査

読有, 26, 2015, 1475 - 1478.

Ken Komiya, Masayuki Yamamura, Cascading DNA Generation Reaction for Controlling DNA Nanomachines

at a Physiological Temperature, New Generation Computing , 査読有, 33, 2015, 213-229.

Nao Fujinaga, Yukiko Yamauchi, Hirotaka Ono, Shuji Kijima, Masafumi Yamashita, Pattern Formation by

Oblivious Asynchronous Mobile Robots, SIAM Journal on Computing , 査読有, 44, 2015, 740-785.

Colin Cooper, Anissa Lamani, Giovanni Viglietta, Masafumi Yamashita, Yukiko Yamauchi, Constructing Selfstabilizing

Oscillators in Population Protocols, Proc. of 17th International Symposium on Stabilization,

Safety,and Security of Distributed Systems , 査読有, No volume number, 2015, 187-200.

Shantanu Das, Paola Flocchini, Nicola Santoro, Masafumi Yamashita, Forming sequences of geometric patterns

with oblivious mobile robots, Distributed Computing , 査読有, 28, 2015, 131-145.

Yukiko Yamauchi, Taichi Uehara, Shuji Kijima, Masafumi Yamashita, Plane Formation by Synchronous

Mobile Robots in the Three Dimensional Euclidean Space, Proc. of International Symposium on Distributed

Computing 2015 , 査読有, No volume number, 2015, 92-106.

Takashi Sakamoto, Atsuo Shigeno, Yuichi Ohtaki, Kenzo Fujimoto, Photo-regulation of constitutive gene

expression in living cells by using ultrafast photo-cross-linking oligonucleotides, Biomaterials Science , 査読

有, 2, 2014, 1154 - 1157.

Kenzo Fujimoto, Yu-ki Takematsu, Atsuo Shigeno, Mirei Furusawa, Takashi Sakamoto, Short oligonucleotide

prodrug having 5-fluoro and 5-iodouracil inhibits the proliferation of cancer cells in a photo-responsive

manner, Bioorg. Med. Chem. Lett , 査読有, 24, 2014, 3736 - 3738.

Shigetaka Nakamura, Kenzo Fujimoto, Creation of DNA Array Structure Equipped with heat resistance by

Ultrafast Photocrosslinking, Journal of Chemical Technology & Biotechnology , 査読有, 89, 2014, 1086 -

1090.

Yusuke Hara, Activation energy of autonomous polymer chain with high LCST, Advanced Materials

Research , 査読有, 941, 2014, 1212-1215.

Yusuke Hara, A self-oscillating polymer chain with high LCST, Advanced Materials Research , 査読有, 941,

2014, 1208-1211.

Yusuke hara, Function and Autonomous Behavior of Self-Oscillating Polymer Systems, Polymers , 査読有, 6,

2014, 1958-1971.

Yukiko Yamauchi, Masafumi Yamashita, Randomized Pattern Formation Algorithm for Asynchronous

Oblivious Mobile Robots, Proceedings of the 28th International Symposium on Distributed Computing (DISC

2014) , 査読有, LNCS8784, 2014, 137-151.

Masami Hagiya, Akihiko Konagaya, Satoshi Kobayashi, Hirohide Saito, Satoshi Murata, Molecular Robots with

Sensors and Intelligence, Accounts of Chemical Research , 査読有, 47/ 6, 2014, 1681-1690.

Y. Hara, H. Mayama, K. Morishima, Generative Force of Self-oscillating Gel, Journal OF Physical Chemistry B ,

査読有, 118(9), 2014, 2576-2581.

H. Abe, Y. Hara, S. Maeda, S. Hashimoto, Adhesion of Gels by silica particle, Journal OF Physical Chemistry B ,

査読有, 118(9), 2014, 2518-2522.

H. Abe, Y. Hara, S. Maeda, S. Hashimoto, Surface modification method for adhesion of gels, Chemistry Letters ,

査読有, 43(2), 2014, 243-245.

A. Suzuki, S. Maeda, Y. Hara, S. Hashimoto, Design and motion control of self-propelled droplets, Proceedings

of The 27th IEEE International Conference on Micro Electro Mechanical Systems, 査読有, MEMS 2014, 2014,

310-313.

Y. Hara, K. Fujimoto, H. Mayama, Self-Oscillation of Polymer Chains with an Fe(bpy)3 Catalyst Induced by

the Belousov-Zhabotinsky Reaction, Journal OF Physical Chemistry B , 査読有, 118(2), 2014, 608-612.

Y. Hara, Y. Yamaguchi, H. Mayama, Switching the BZ Reaction with a Strong-Acid-Free Gel, Journal OF

Physical Chemistry B , 査読有, 118(2), 2014, 634-638.

Y. Hara, H. Mayama, Y. Yamaguchi, K. Fujimoto, Activation energy of the Belousov–Zhabotinsky reaction in a

gel with Fe(bpy)3 catalyst, Chemistry Letters , 査読有, 43 (5), 2014, 673-675.

Masami Hagiya, Akihiko Konagaya, Satoshi Kobayashi, Hirohide Saito, Satoshi Murata, Molecular Robots with

Sensors and Intelligence, Accounts of Chemical Research , 査読有, 47(6), 2014, 1681-1690.

Kenzo Fujimoto, Asuka Yamada, Yoshinaga Yoshimura, Tadashi Tsukaguchi and Takashi Sakamoto, Details of the

ultra-fast DNA photocrosslinking reaction of 3-cyanovinylcarbazole nucleoside; Cis-trans isomeric effect

and the application for SNP based genotyping, J. Am. Chem. Soc , 査読有, 135, 2013, 16161-16167.

Kenzo Fujimoto, Satomi Kishi and Takashi Sakamoto, Geometric Effect on the Photocrosslinking

Reaction between 3-Cyanovinylcarbazole Nucleoside and Pyrimidine Base in DNA/RNA Heteroduplex,

Photochemistry and Photobiology , 査読有, 89, 2013, 1095-1099.

Kenzo Fujimoto, Hiroki Yoshinaga, Yasumasa Yoshio and Takashi Sakamoto, Quick and Reversible

Photocrosslinking Reaction of 3-Cyanovinylcarbazole Nucleoside in DNA Triplex, Organic & Biomolecular

Chemistry , 査読有, 11, 2013, 5065-5068.

Y. Hara, H. Mayama, Y. Yamaguchi, Y. Takenaka, R. Fukuda, Direct Observation of Periodic Swelling and

Collapse of Polymer Chain Induced by the Belousov-Zhabotinsky Reaction, Journal OF Physical Chemistry B ,

査読有, 117 (46), 2013, 14351-14357.

Paola Flocchini, Nicola Santoro, Giovanni Viglietta, Masafumi Yamashita, Rendezvous of Two Robots with

Constant Memory, Proceedings of the 20th International Colloquium on Structural Information and

Communication Complexity , 査読有, LNCS 8179, 2013, 189-200.

Yukiko Yamauchi, Masafumi Yamashita, Pattern Formation by Mobile Robots with Limited Visibility,

Proceedings of the 20th International Colloquium on Structural Information and Communication Complexity ,

査読有, LNCS 8179, 2013, 201-212.

Xiaoguang Xu, Yukiko Yamauchi, Shuji Kijima and Masafumi Yamashita, On Space Complexity of Self-Stabilizing

Leader Election in Population Protocol Based on k-interaction, Proceedings of the 15th International

Symposium on Stabilization, Safety, and Security of Distributed Systems , 査読有, LNCS 8255, 2013, 86-97.

Satoshi Kobayashi, Enumeration Approach to Computing Chemical Equilibria, Theoretical Computer Science ,

査読有, 499, 2013, 51-87.

Kenzo Fujimoto, Kaoru Konishi-Hiratsuka and Takashi Sakamoto, Quick, Selective and Reversible

Photocrosslinking Reaction between 5-Methylcytosine and 3-Cyanovinylcarbazole in DNA Double Strand,

Int. J. Mol. Sci , 査読有, 14(3), 2013, 5765-5774.

Kenzo Fujimoto, Daiki Futamura and Takashi Sakamoto, Diamine Derivatives Accelerate Photochemical C → U

Transition in DNA Double Strand, Chem. Lett , 査読有, 42, 2013, 289-291.

S. Murata, A. Konagaya, S. Kobayashi, H. Saito, M. Hagiya, Molecular Robotics: A New Paradigm for Artifacts,

New Generation Computing , 査読有, 31, 2013, 27-45.

Atsuo Shigeno, Takashi Sakamoto, Yoshinaga Yoshimura and Kenzo Fujimoto, Quick Regulation of mRNA

Functions by a Few Seconds of Photoirradiation, Organic & Biomolecular Chemistry , 査読有, 10(38), 2012,

7820-7825.

Kenzo Fujimoto, Kaoru Hiratsuka-Konishi, Takashi Sakamoto, Tomoko Ohtake, Ken-ichi Shinohara and Yoshinaga

Yoshimura, Specific and reversible photochemical labeling of plasmid DNA using photoresponsive

oligonucleotides containing 3-cyanovinylcarbazole, Molecular BioSystems , 査読有, 8 (2), 2012, 491 - 494.

Shigetaka Nakamura, Shinzi Ogasawara, Shigeo Matuda, Isao Saito and Kenzo Fujimoto, Template Directed

Reversible Photochemical Ligation of Oligodeoxynucleotides, Molecules , 査読有, 17, 2012, 163-178.

Yusuke Hara and Rumana A. Jahan, Activation Energy of Aggregation-Disaggregation Self-Oscillation of

Polymer Chain, Int. J. Mol. Sci , 査読有, 13(12), 2012, 16281-16290.

Nao Fujinaga, Yukiko Yamauchi, Shuji Kijima, and Masafumi Yamashita, Asynchronous pattern formation

by anonymous oblivious mobile robots, Proceedings of the 26th International Symposium on Distributed

Computing (DISC 2012) , 査読有, 1, 2012, 312--325.

Fumiya Okubo, Satoshi Kobayashi, Takashi Yokomori, On the properties of language classes defined by

bounded reaction automata, Theoretical Computer Science, 査読有, 454, 2012, 206-221.

B01公募班

25104515/15H00824 東　俊一

Azuma S, Yoshida T, Sugie T, Designability of Multi-attractor Boolean Networks with a Fixed

Network Structure, IEICE Transactions on Fundamentals of Electronics, Communications and

Computer Sciences, 査読有, E99-A, 2016, 423-425.

Azuma S, Yoshida T, Sugie T, Structural Monostability of Activation-Inhibition Boolean Networks, IEEE

Transactions on Control of Network Systems , 査読有, 3, 2016, 179-190.

吉田　卓弘，東　俊一，杉江　俊治, ブーリアンネットワークのネットワーク構造とダイナミクス多様性, 計測自

動制御学会論文集, 査読有, Vol. 51，No. 3, 2015, 155-161.

25104516/15H00815 大下　福仁

Shibata M, Kawai S, Ooshita F, Kakugawa H, Masuzawa T, Partial gathering of mobile agents in asynchronous

unidirectional rings, THEOR. COMPUT. SCI. , 査読有, 617, 2016, 1-11.

Asada Y, Ooshita F, Inoue M, An efficient silent self-stabilizing 1-maximal matching algorithm in anonymous

networks, Journal of Graph Algorithms and Applications, 査読有, 20, 2016, 59-78.

Ooshita F, Tixeuil S, On the self-stabilization of mobile oblivious robots in uniform rings, THEOR. COMPUT.

SCI. , 査読有, 568 , 2015, 84-96.

Ooshita F, Kawai S, Kakugawa H, Masuzawa T, Randomized gathering of mobile agents in anonymous

unidirectional ring networks, IEEE Transactions on Parallel and Distributed Systems , 査読有, 25 , 2014,

1289-1296.

Kawai S, Ooshita F, Kakugawa H, Masuzawa T, Analysis of distributed token circulation algorithm with faulty

random number generator, Parallel Processing Letters , 査読有, 24, 2014, 1450002（15pages).

25104519/15H00821 山内 由紀子

Fujinaga N, Yamauchi Y, Ono H, Kijima S, Yamashita M, Pattern Formation by Oblivious Asynchronous Mobile

Robots, SIAM Journal on Computing , 査読有, 44, 2015, 740-785.

25104520/15H00804 嶋田　直彦

Saito K, Shimada N, Maruyama A, Cooperative enhancement of deoxyribozyme activity by chemical

modification and added cationic copolymer, Science and Technology of Advanced Materials , 査読有, 17,

2016, 437-442.

Yamaguchi N, Zouzumi YK, Shimada N, Nakano S, Sugimoto N, Maruyama A, Miyoshi D, A reversible B-A

transition of DNA duplexes induced by synthetic cationic copolymers, Chem Commun (Camb) , 査読有, 52,

2016, 7446-7449.

Shimada N, Song W, Maruyama A, DNA strand exchange reaction activated by cationic comb-type

copolymers having ureido groups, Biomater. Sci. , 査読有, 2 , 2014, 1480-1485.

25104521 小野　廣隆

Asano T, Izumi T, Kiyomi M, Konagaya M, Ono H, Otachi Y, Schweitzer P, Tarui J, Uehara R, Depth-First Search

Using O(n) Bits, Algorithms and Computation Lecture Notes in Computer Science , 査読有, 8889 , 2014, 553-

564.

Haraguchi K, Ono H, Approximability of Latin Square Completion-Type Puzzles, Fun with Algorithms,

Lecture Notes in Computer Science , 査読有, 8496 , 2014, 218-229.

Ito T, Kaminski M, Ono H, Suzuki A, Uehara R, Yamanaka K, On the Parameterized Complexity for Token

Jumping on Graphs, Theory and Applications of Models of Computation, Lecture Notes in Computer Science,

査読有, 8402 , 2014, 341-351.

Ishii T, Ono H, Uno Y, (Total) Vector Domination for Graphs with Bounded Branchwidth, LATIN 2014:

Theoretical Informatics, Lecture Notes in Computer Science , 査読有, 8392 , 2014, 238-249.

Cooper C, Elsaesser R, Ono H, Radzik T, Coalescing Random Walks and Voting on Connected Graphs, SIAM J.

Discrete Math., 査読有, 27(4) , 2013, 1748-1758.

25104523 磯川 梯次郎

Mori M, Isokawa T, Peper F, Matsui N, Swarm Networks in Brownian Environments, New Generation

Computing, 査読有, 33(3), 2015, 297–318.

25104525/15H00823 中茎　隆

Nishijima K, Nakakuki T, Sato Y, Nomura SM, DNA Switcher for a Molecular Robot, Proc. of ICT-ROBOT2016 ,

査読有, 2016.

Nakakuki T, Imura J, Molecular Governor: DNA Feedback Regulator for Molecular Robotics, SICE Journal of

Control, Measurement, and System Integration , 査読有, 9(2), 2016, 60-69.

中茎　隆, 除算型フィードバックを有する生化学反応系の安定性解析手法, 電気学会論文誌C , 査読有, 136, 2016,

617-624.

Nakakuki T, A multifunctional controller realized by biochemical reactions, SICE Journal of Control,

Measurement, and System Integration, 査読有, 8 (2), 2015, 99-107.

Nakakuki T, Molecular governor that regulates DNA reactions for molecular robotics, Proc. of SICE Annual

Conference (SICE2015) , 査読有, , 2015, 1-8.

Nakakuki T, A study on integral control realized by biochemical reactions, Porc. of SICE Annual Conference

(SICE2014) , 査読有, 2014, 1-4.

Nakakuki T, A study on stability analysis of biochemical reaction system with negative feedback regulation,

Proc. of International Conference on Control, Automation and Systems (ICCAS2014) , 査読有 , 2014, 1-5.

Nakakuki T, Control system with biochemical reaction network and its application to molecular robotics,

Proc. of The 5th International Symposium on Advanced Control of Industrial Prosesses (ADCONIP2014) , 査読

有, 2014, 301-306.

15H00793 鬼塚　和光

Onizuka K, Hazemi ME, Thomas JM, Monteleone LR, Yamada K, Imoto S, Beal PA, Nagatsugi F, Synthesis of

native-like crosslinked duplex RNA and study of its properties, Bioorg Med Chem. , 査読有, 25, 2017, 2191-

2199.

Onizuka K, Chikuni T, Amemiya T, Miyashita T, Onizuka K, Abe H, Nagatsugi F, Pseudorotaxane formation via

the slippage process with chemically cyclized oligonucleotides, Nucleic Acids Res. , 査読有, 45(9), 2017,

5036-5047.

15H00816 小林　徹也

Saito Y, Sughiyama Y, Kaneko K, Kobayashi TJ, Discreteness-induced transitions in multibody reaction

systems, Physical Review E , 査読有, 94, 2016, 22140.

C01計画班

Gutman G, Inoue D, Kakugo A, Konagaya A, Parallel Interaction Detection Algorithms for a Particle-based

Live Controlled Real-time Microtubule Gliding Simulation System Accelerated by GPGPU, New Generation

Computing , 査読有, 35, 2017, 157-180.

Gutman G, Inoue D, Kakugo A, Konagaya A, Real-Time 3D Microtuble Gliding Simulation Accelarated by GPU

Computing, Inter. J. of Automation and Computing , 査読有, 13, 2017, 108-116.

Arif Md, Rashedul Kabir, Masaki Ito, Kyohei Uenishi, Shizuka Anan, Akihiko Konagaya, Kazuki Konagaya, Miwa

Sugiura, Akira Kakugo, An ATP generation system for in vitro motility assay, Chemistry Letters , 査読有, 46,

2017, 178-180.

Saito A, Farhana TI, Kabir AMR, Inoue D, Konagaya A, Sada K, Kakugo A, Understanding the emergence of

collective motion of microtubules driven by kinesins: role of concentration of microtubules and depletion

force, RSC Adv. , 査読有, 7, 2017, 13191-13197.

Kobayashi S, Terai T, Yoshikawa Y, Ohkawa R, Ebihara M, Hayashi M, Takiguchi K, Nemoto N, In vitro Selection

of Random Peptides against Artificial Lipid Bilayers: A Potential Tool to Immobilize Molecules on

Membranes, Chem Comm, 査読有, 53, 2017, 3458-3461.

Nakamura Y, Yamada S, Nishikawa S, Matsuura K, DNA-modified Artificial Viral Capsids self-assembled from

DNA-conjugated beta-Annulus Peptide, J. Pept. Sci. , 査読有, 23, 2017, 636-643.

Walter HK, Bauer J, Steinmeyer J, Kuzuya A, Niemeyer CM, Wagenknecht HA, "DNA origami traffic lights" with

split aptamer sensor for bicolor fluorescence readout, Nano Lett., Article ASAP , 査読有, 17(4), 2017, 2467-

2472.

Sato Y, Hiratsuka Y, Kawamata I, Murata S, Nomura SM, Micrometer-sized molecular robot changes its shape

in response to signal molecules, Science Robotics, 査読有, 2(4), 2017, eaal3735.

Inoue D, Nitta T, Rashedul Kabir AM, Sada K, Gong JP, Konagaya A, Kakugo A, Sensing surface mechanical

deformation using active probes driven by motor proteins, Nature Communications , 査読有, 7, 2016, 1-10.

Ito M, Kabir AMR, Islam MS, Inoue D, Wada S, Sada K, Konagaya A, Kakugo A, Mechanical Oscillation of

Dynamic Microtubule Rings, RSC Adv. , 査読有, 73, 2016, 69149-69155.

Nishiyama M, Takiguchi K, Hayashi M, High-pressure microscopy for controlling microtubule dynamics, 顕

微鏡（日本顕微鏡学会） , 査読無, Vol. 51 No. 2, 2016, 118 － 121.

Yamada S, Isogai T, Tero R, Tanaka-Takiguchi Y, Ujihara T, Kinoshita M, Takiguchi K, Septin interferes with the

temperature-dependent domain formation and disappearance of lipid bilayer membranes, Langmuir , 査読

有, 32(48), 2016, 12823 － 12832.

Matsuura K, Nakamura T, Watanabe K, Noguchi T, Minamihata K, Kamiya N, Kimizuka N, Self-assembly of Ni-

NTA-modified beta-Annulus Peptides into Artificial Viral Capsids and Encapsulation of His-tagged Proteins,

Org., Biomol. Chem. , 査読有, 14(33), 2016, 7869–7874.

Fujita S, Matsuura K, Encapsulation of CdTe Quantum Dots in Synthetic Viral Capsids, Chem. Lett. , 査読有,

45 (8), 2016, 922-924.

Matsuura K, Mizuguchi Y, Kimizuka N, Peptide Nanospheres Self-Assembled from a Modified beta-Annulus

Peptide of Sesbania Mosaic Virus, Biopolymers: Peptide Science, 査読有, 106(4), 2016, 470–475.

Kandatsu D, Cervantes-Salguero K, Kawamata I, Hamada S, Nomura SM, Fujimoto K, Murata S, Reversible Gel ‐

Sol Transition of Photo-Responsive DNA Gel, ChemBioChem , 査読有, 17(12), 2016, 1118–1121.

佐藤　佑介, 瀧ノ上 正浩, 野村 M 慎一郎, BIOMOD: 分子ロボティクスの次世代育成大会, 生物物理, 査読有,

56(5), 2016, 290-292.

松浦　和則, 人工ペプチドによる自己集合性材料- ウイルスキャプシドと光誘起ナノファイバ-, 生物物理, 査読有,

324, 2016, 94-97.

Godonoga M, Lin TY, Oshima A, Sumitomo K, Tang MS, Cheung YW, Kinghorn AB, Dirkzwager RM, Zhou C,

Kuzuya A, Tanner JA and Heddle JG, A DNA aptamer recognising a malaria protein biomarker can function

as part of a DNA origami assembly, Scientific Reports , 査読有, 6, 2016, 21266.

Oda Y. Sadakane K, Yoshikawa Y, Imanaka T, Takiguchi K, Hayashi M, Kenmotsu T and Yoshikawa K, Highly

Concentrated Ethanol Solutions: Good Solvents for DNA as Revealed by Single-Molecule Observation,

ChemPhysChem, 査読有, 17, 2016, 471-473.

Hayashi M, Nishiyama M, Kazayama Y, Toyota T, Harada Y. and Takiguchi K, Reversible Morphological Control

of Tubulin-Encapsulating Giant Liposomes by Hydrostatic Pressure, Langmuir , 査読有, 32, 2016, 3794-

3802.

Inoue D, Mahmot B, Kabir AMR, Farhana TI, Tokuraku K, Sada K, Konagaya A and Kakugo A, Depletion Force

Induced Collective Motion of Microtubules Driven by Kinesin, Nanoscale , 査読有, 7, 2015, 18054-18061.

Han Y, Hara A, Kuzuya A, Watanabe R, Ohya Y, Konagaya A, Automatic Recognition of DNA Pliers in Atomic

Force Microscopy Images, New Generation Computing , 査読有, 33, 2015, 253-270.

Gaudreau P, Hayami K, Aoki Y, Safouhi H, Konagaya A, Improvements to the cluster Newton method for

underdetermined inverse problems, J. Computational Applied Mathematics, 査読有, 283, 2015, 122-141.

Wada Shoki, Kabir Arif, Kawamura Ryuzo, Ito Masaki, Inoue Daisuke, Sada Kazuki, Akira Kakugo, Controlling the

Bias of Rotational Motion of Ring-Shaped Microtubule Assembly, Biomacromolecules 12 , 査読有, 16, 2015,

374-378.

Wada Shoki, Kabir Arif, Kawamura Ryuzo, Ito Masaki, Inoue Daisuke, Sada Kazuki, Akira Kakugo, Effect of

length and rigidity of microtubules on the size of ring-shaped assemblies obtained through active selforganization,

Soft matter 11 , 査読有, 11, 2015, 1151-1157.

Arif Md. Rashedul Kabir, Daisuke Inoue, Yuri Kishimoto, Jun-ichi Hotta, Keiji Sasaki, Noboru Kitamura, Jian

Ping Gong, Hiroyuki Mayama, and Akira Kakugo, Drag force on micron-sized objects with different surface

morphologies in a flow with a small Reynolds number, Polymer Journal , 査読有, 47, 2015, 564–570.

Masahiro Furutani, Akihito Uemura, Akira Shigenaga, Chiaki Komiya, Akira Otaka, and Kazunori Matsuura,

A photoinduced growth system of peptide nanofibres addressed by DNA hybridization, Chemical

Communications , 査読有, 51, 2015, 8020-8022.

Nobuhiko Kato, Akihiko Ishijima, Takehiko Inaba, Fumimasa Nomura, Shuichi Takeda, Kingo Takiguchi, Effects of

lipid composition and solution conditions on the mechanical properties of membrane vesicles, Membranes ,

査読有, 5, 2015, 22-47.

Keitel Cervantes-Salguero, Shogo Hamada, Shin-ichiro M. Nomura and Satoshi Murata, Polymorphic Ring-

Shaped Molecular Clusters Made of Shape-Variable Building Blocks, Nanomaterials , 査読有, 5(1), 2015, 208-

217.

Morimoto N, Muramatsu K, Nomura SM, & Suzuki M, Trading polymeric microspheres: Exchanging DNA

molecules via microsphere interaction, Colloids and Surfaces B-Biointerfaces , 査読有, 128C, 2015, 95-99.

Ueno Y, Ito S, Konagaya A, Implementing a modeling software for animated protein-complex interactions

using a physics simulation library, Journal of bioinformatics and computational biology , 査読有, 12, 2014,

1442003.

Han Y, Inoue D, Kakugo A, Konagaya A, Tracking single microtubules by using B-spline curves and Hausdorff

Distance., Proc. of Int. Conf. on Image Processing Theory, Tools and Applications , 査読有, -, 2014, 1-6.

Gutmann G, Inoue D, Kakugo A, Konagaya A, Real-time 3D Microtubule Gliding Simulation, Proc. of LSMS &

ICSEE 2014 , 査読有, 461, 2014, 13-22.

Aoki Y, Hayami K, Sterck HD, Konagaya A, Cluster Newton Method for Sampling Multiple Solutions

of Underdetermined Inverse Problems: Application to a Parameter Identification Problem in

Pharmacokinetics, SIAM J. Scientific Computing , 査読有, 36, 2014, B14-B44.

Kabir Arif, Inoue Daisuke, Hamano Yoshimi, Mayama Hiroyuki, Sada Kazuki, Kakugo Akira, Biomolecular Motor

Modulates Mechanical Property of Microtubule, Biomacromolecules , 査読有, 15, 2014, 1797-1805.

Akinori Kuzuya, Ryosuke Watanabe, Yusei Yamanaka, Takuya Tamaki, Masafumi Kaino, and Yuichi Ohya,

Nanomechanical DNA Origami pH Sensors, Sensors , 査読有, 14, 2014, 19329-19335.

Takahiro Yamazaki, Jonathan Gardiner Heddle, Akinori Kuzuya, and Makoto Komiyama, Orthogonal Enzyme

Arrays on a DNA Origami Scaffold Bearing Size-Tunable Wells, Nanoscale , 査読有, 6, 2014, 9122-9126.

Kingo Takiguchi, Makiko Negishi, Yohko Tanaka-Takiguchi, Hayashi Masahito, Kenichi Yoshikawa, Specific

transformation of assembly with actin filaments and molecular motors in a cell-sized self-emerged

liposome, Origins of Life and Evolution of Biospheres , 査読有, 44(4), 2014, 325-329.

吉澤　慧，藤原　慶，野村 M. 慎一郎，村田　智, DNA ナノテクノロジーのためのアウトリーチツールの開発と評価,

形の科学会誌, 査読有, 29, 2014, 87-96.

Akira C. Saito, Toshihiko Ogura, Kei Fujiwara, Satoshi Murata, Shin-ichiro M. Nomura, Introducing Micrometer-

Sized Artificial Objects into Live Cells:A Method for Cell-Giant Unilamellar Vesicle Electrofusion, PLoS ONE ,

査読有, 9, 2014, e106853.

Kei Fujiwara, Miho Yanagisawa and Shin-ichiro M. Nomura, Reconstitution of intracellular environments in

vitro and in artificial cells, BIOPHYSICS , 査読有, 10, 2014, 43-48.

Nobuyuki Morimoto, Yu Sasaki, Kouki Mitsunushi, Evgeniya Korchagina, Tetsuichi Wazawa, Xing-Ping Qiu, Shinichiro

M. Nomura, Makoto Suzuki, Francoise M. Winnik, Temperature-responsive telechelic dipalmitoylglyceryl

poly (N-isopropylacryla- mides) vesicles : real-time morphology observation in aqueous suspension and in

the presence of giant liposomes, Chem. Commun. , 査読有, 50, 2014, 8350-8352.

齋藤 C. 明，野村 M. 慎一郎, 細胞のメカノトランスダクション研究の新技法提案：リポソームから細胞内への「巨

大」人工物導入法, 細胞工学, 33, 2014, 928-933.

Yoshida K, Maeda K, Kusuhara H, Konagaya A, Estimation of feasible solution space using Cluster Newton

Method: application to pharmacokinetic analysis of irinotecan with physiologically-based pharmacokinetic

models, BMC Systems Biology 2013 , 査読有, 7 (Suppl 3), 2013, S3.

Daisuke Inoue, Arif Md. Rashedul Kabir, Hiroyuki Mayama, Jian Ping Gong, Kazuki Sada and Akira Kakugo,

Growth of Ring Shaped Microtubule Assemblies through Stepwise Active Self-Organisation, Soft matter , 査

読有, 9, 2013, 7061-7068.

Masaki Ito, Arif Md Rashedul Kabir, Daisuke Inoue, Takayuki Torisawa, Yoko Toyoshima, Kazuki Sada, Akira

Kakugo, Formation of Ring-Shaped Microtubule Assemblies through Active Self-Organization on Dynein,

Polymer Journal , 査読有, -, 2013, -.

Akinori Kuzuya, Ryosuke Watanabe, Mirai Hashizume, Masafumi Kaino, Shinya Minamida, Koji Kameda, Yuichi

Ohya, Precise structure control of three-state nanomechanical DNA origami devices, Methods , 査読有,

67(2), 2013, 250-255.

Tomoyoshi Takahashi, Fumimasa Nomura, Yasunori Yokoyama, Yohko Tanaka-Takiguchi, Michio Homma, Kingo

Takiguchi, Multiple Membrane Interactions and Versatile Vesicle Deformations Elicited by Melittin, Toxins ,

査読有, 5, 2013, 637-664.

Shin-ichiro M. NOMURA, Yusuke Sato, Kei Fujiwara, Molecular robotics approach for constructing an

artificial cell model, ADVANCES IN ARTIFICIAL LIFE , 査読有, 2013, 488-491.

Daiki Komatsu, Kei Fujiwara, Shin-ichiro M. Nomura, Construction of a remote-controlled supramolecular

micro-crawler, ADVANCES IN ARTIFICIAL LIFE , 査読有, 2013, 208-209.

Kei Fujiwara, Keita B. Aoi, Shin-ichiro M. Nomura, A bacterial salt sensor created by multiplying phenotypes

of GroE-depleted Escherichia coli, Analytical Methods , 査読有, 5, 2013, 5918-5922.

Kei Fujiwara, Tsutomu Katayama, Shin-ichiro M. Nomura, Cooperative working of bacterial chromosome

replication proteins generated by a reconstituted protein expression system, Nucleic Acid Research, 査読有,

41(14), 2013, 7176-7183.

C01公募班

25104510/15H00807 濱田　勉

Suzuki Y, Nagai KH, Zinchenko A, Hamada T, Photo-induced Fusion of Lipid Bilayer Membranes, Langmuir ,

査読有, 33 (10), 2017, 2671–2676.

Shigyou K, Nagai KH, Hamada T, Lateral diffusion of a submicron particle on a lipid bilayer membrane,

Langmuir , 査読有, 32, 2016, 13771–13777.

Shimokawa N, Himeno H, Hamada T, Takagi M, Komura S, Andelman D, Phase Diagrams and Ordering in

Charged Membranes: Binary Mixtures of Charged and Neutral Lipids, J. Phys. Chem. B , 査読有, 120, 2016,

6358–6367.

Kawasaki S, Muraoka T, Hamada T, Shigyou K, Nagatsugi F, Kinbara K, Synthesis and Thermal Responses of

Polygonal Poly (ethylene glycol) Analogues, Chemistry-An Asian Journal , 査読有, 11, 2016, 1028-1035.

Takahashi M, Mohan P, Nakade A, Higashimine K, Mott D, Hamada T, Matsumura K, Taguchi T, Maenosono S, Ag/

FeCo/Ag Core/Shell/Shell Magnetic Nanoparticles with Plasmonic Imaging Capability, Langmuir , 査読有,

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Himeno H, Ito H, Higuchi Y, Hamada T, Shimokawa N, Takagi M, Coupling between pore formation and phase

separation in charged lipid membranes, Physical Review E , 査読有, 92, 2015, 62713.

Hamada T, Fujimoto R, Shimobayashi SF, Ichikawa M, Takagi M, Molecular behavior of DNA in a cell-sized

compartment coated by lipids, Phys. Rev. E , 査読有, 91, 2015, 62717.

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Himeno H, Shimokawa N, Komura S, Andelman D, Hamada T, Takagi M, Charge-induced phase separation in

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Morita M, Hamada T, Vestergaard MC, Takagi M, Endo- and Exocytic Budding Transformation of Slow-

Diffusing Membrane Domains Induced by Alzheimer’s Amyloid Beta, Phys. Chem. Chem. Phys ., 査読有, 16,

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Shima T, Muraoka T, Hamada T, Morita M, Takagi M, Fukuoka H, Inoue Y, Sagawa T, Ishijima A, Omata Y,

Yamashita T, Kinbara K, Micrometer-Size Vesicle Formation Triggered by UV Light, Langmuir , 査読有, 30,

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Kawasaki S, Muraoka T, Obara H, Ishii T, Hamada T, Kinbara K, Thermodriven Micrometer-Scale Aqueous-

Phase Separation of Amphiphilic Oligoethylene Glycol Analogues, Chemistry-An Asian Journal , 査読有, 9,

2014, 2778-2788.

濱田 勉、市川　正敏, 人工細胞システムの創成と構造制御, 生化学, 査読無, 86, 2014, 209-213.

Ito H, Yamanaka T, Kato S, Hamada T, Takagi M, Ichikawa M, Yoshikawa K, Dynamical formation of lipid

bilayer vesicles from lipid-coated droplets across a planar monolayer at an oil/water interface, Soft Matter ,

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Ohara K, Kohno M, Hamada T, Kawakami K, Entry of a cationic lytic-type peptide into the cytoplasm via

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Phan HTT, Hata T, Morita M, Yoda T, Hamada T, Vestergaard MC, Takagi M, The effect of oxysterols on the

interaction of Alzheimer's amyloid beta with model membranes, Biochim. Biophys. Acta, Biomembr ., 査読有,

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濱田　勉, ナノ粒子－生体膜相互作用の解析：細胞サイズリポソームを用いた物理化学的アプローチ, BIO

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濱田 　勉, 脂質膜へテロ界面はナノ物質をサイズ依存的に識別する, 生物物理, 査読無, 53 , 2013, 210-211.

25104511/15H00808 坂本　隆

Fujimoto K, Toyosato K, Nakamura S, Sakamoto T, RNA fluorescence in situ hybridization using

3-cyanovinylcarbazole modified oligodeoxyribonucleotides as photo-cross-linkable probes, Bioorganic &

Medicinal Chemistry Letters , 査読有, 26(21), 2016, 5312–5314.

Sakamoto T, Hasegawa D, Fujimoto K, Simultaneous detection of single-nucleotide polymorphisms in a DNA

bulge structure using fluorinemodified bisbenzimide derivative, Analyst , 査読有, 141, 2016, 1214-1217 .

坂本　隆, DNA 捕捉・放出能力を持つ新規高分子材料, 新学術領域「分子ロボティクス」News Letter , 査読無,

11, 2014, 11.

坂本　隆, 分子ロボット創製に向けたDNA・RNA の光操作, 新学術領域「分子ロボティクス」News Letter , 査読無,

7 , 2014, 13.

25104512/15H00809 池田　将

Shigemitsu H, Fujisaku T, Onogi S, Yoshii T, Ikeda M, Hamachi I, Preparation of supramolecular hydrogelenzyme

hybrids exhibiting biomolecule-responsive gel degradation, Nat. Protoc. , 査読有, 11, 2016, 1744-

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Ikeda M, Kamimura M, Hayakawa Y, Shibata A, Kitade Y, Reduction-responsive guanine incorporated into

G-quadruplex-forming DNA, ChemBioChem , 査読有, 17, 2016, 1304-1307.

Onogi S, Shigemitsu H, Yoshii T, Tanida T, Ikeda M, Kubota R, Hamachi I, In situ real-time imaging of selfsorted

supramolecular nanofibres, NATURE CHEMISTRY , 査読有, 8, 2016, 743–752.

Ikeda M, Kabumoto M, Chemically Caged Nucleic Acids, Chem. Lett , 査読有, 46, 2016, 634-640.

Ikeda M, Kawakami M, Kitade Y, Pro-apoptotic Peptide Amphiphile Self-Assembled with the Assistance of

Polycations, Chem. Lett. , 査読有, 44, 2015, 1137-1139.

Ikeda M, Tanida T, Yoshii T, Kurotani K, Onogi S, Urayama K, Hamachi I, Installing Logic-Gate Response to a

Variety of Biological Substances in Supramolecular Hydrogel-Enzyme Hybrids, Nature Chemistry , 査読有, 6,

2014, 511-518.

池田 将、浜地　格, 生体分子を見分けて溶けるヒドロゲルの開発, 現代化学, 査読無, 11, 2014, 24-29.

25104522 柳澤　実穂

Morita M, Onoe H, Yanagisawa M, Ito H, Ichikawa M, Fujiwara K, Saito H, Takinue M, Droplet ‐ shooting and

size ‐ filtration (DSSF) method for synthesis of cell-sized liposomes with controlled lipid compositions,

ChemBioChem , 査読有, 16, 2015, 2029-2035.

柳澤　実穂, 藤原　慶, 高分子混雑効果を細胞モデル系から読み解く, 生物物理, 査読有, 55, 2015, 246-249.

柳澤　実穂, 触感向上, DDS 技術への応用ができるミクロなゲルの自発的な形状制御技術, Cosmetic stage , 査読無,

9, 2015, 67-72.

Yanagisawa M, Nigorikawa S, Sakaue T, Fujiwara K, Tokita M, Multiple patterns of polymer gels in

microspheres due to the interplay among phase separation, wetting, and gelation, Proceedings of the

National Academy of Sciences of the United States of America , 査読有, 111, 2014, 15894-15899.

Yanagisawa M, Yamashita Y, Mukai S, Annaka M, Tokita M, Phase separation in binary polymer solution:

Gelatin/Poly (ethylene glycol) system, Journal of Molecular Liquids , 査読有, 200, 2014, 2-6.

Fujiwara K, Yanagisawa M, Nomura SM, Reconstitution of intracellular environments in vitro and in

artificial cells, BIOPHYSICS , 査読有, 10, 2014, 43-48.

Yamashita Y, Yanagisawa M, Tokita M, Sol-gel transition and phase separation in ternary system of gelatinwater;

poly(ethylene glycol) oligomer, Journal of Molecular Liquids, 査読有, 200, 2014, 47-51.

25104526/15H00790 小笠原 慎治

Ogasawara S., Duration Control of Protein Expression In Vivo by Light-Mediated Reversible Activation of

Translation, ACS CHEM BIOL , 査読有, 12, 2017, 351-356.

25104527 上野　豊

Ueno Y, Ito S, Konagaya A, Implementing a modeling software for animated protein-complex interactions

using a physics simulation library, J Bioinform Comput Biol. , 査読有, 12, 2014, 1442003.

15H00797 根本　直人

Takahashi K, Sunohara M, Terai T, Kumachi S, Nemoto N, Enhanced mRNA-protein fusion efficiency of a

single-domain antibody by selection of mRNA display with additional random sequences in the terminal

translated regions, Biophys Physicobiol , 査読有, 14, 2017, 23-28.

Kobayashi S, Terai T, Yoshikawa Y, Ohkawa R, Ebihara M, Hayashi M, Takiguchi K, Nemoto N, In vitro Selection

of Random Peptides against Artificial Lipid Bilayers: A Potential Tool to Immobilize Molecules on

Membranes, Chem Commun (Camb) , 査読有, 53, 2017, 3458-3461.

Kumachi S, Husimi Y, Nemoto N, An RNA Binding Peptide Consisting of Four Types of Amino Acid by in Vitro

Selection Using cDNA Display, ACS Omega , 査読有, 1, 2016, 52–57.

根本　直人, cDNA ディスプレイによる機能性ペプチドアプタマーの創生, 日本生物工学会誌, 査読有, 94, 2016,

481-484.

熊地　重文、根本　直人, 試験管内進化を加速するcDNA display システム, 酵素工学ニュース, 査読有, 76,

2016, 21-25.

根本　直人, 膜穿孔タンパク質と熱応答磁性ナノ粒子による環境感応型リポソーム駆動システムの構築,

Molecular Robotics Research Group News Letter , 査読無, 17, 2016, 14.

Mochizuki Y, Suzuki T, Fujimoto K, Nemoto N, A versatile puromycin-linker using cnvK for high-throughput

in vitro selection by cDNA display, J Biotecnol, 査読有, 212, 2015, 174-180.

Nemoto N, Yoshikawa Y, Miyajima T, Kobayashi S, Functional Analysis of Liposome Anchoring Peptide

Selected by Complementary DNA display (cDNA display), Peptide Science 2014 (Edited by Akira Otaka) , 査読

有, 51, 2015, 71-72.

15H00801 庄田 耕一郎

K Shohda, K Takahashi, and A Suyama, A method of gentle hydration to prepare oil-free giant unilamellar

vesicles that can confine enzymatic reactions, Biochem. Biophys. Rep. , 査読有, 3, 2015, 76-82.

15H00805 上野　隆史

B. Maity, S. Abe, and T. Ueno, Observation of gold sub-nanocluster nucleation within a crystalline protein

cage, Nat. Commun. , 査読有, 8, 2017, 14820-14825.

S. Abe, H. Tabe, H. Ijiri, K. Yamashita, K. Hirata, K. Atsumi, T. Shimoi, M. Akai, H. Mori, S. Kitagawa and T. Ueno,

Crystal Engineering of Self-Assembled Porous Protein Materials in Living Cells, ACS Nano , 査読有, 11, 2017,

2410-2419.

B. Maity, and T. Ueno, Design of Bioinorganic Materials At the Interface of Coordination and

Biosupramolecular Chemistry, Chem. Rec , 査読有, 17, 2017, 383-398.

15H00806 下川　直史

Sharma N, Baek KOK, Phan HTT, Shimokawa N, Takagi M, Glycosyl chains and 25-hydroxycholesterol

contribute to the intracellular transport of amyloid beta (A β -42) in Jurkat T cells, FEBS Open Bio , 査読有,

7（6）, 2017, 865–876.

Shimokawa N, Mukai R, Nagata M, Takagi M, Formation of modulated phases and domain rigidification in

fatty acid-containing lipid membranes, Phys Chem Chem Phys. , 査読有, 19(20), 2017, 13252-13263.

下川　直史、高木　昌宏, 分子間の弱い相互作用と生体秩序- 生体模倣膜の相分離構造, 化学 , 査読無, 72(2),

2017, 68-69.

下川　直史、高木　昌宏, ２次元・３次元膜ダイナミクスと細胞信号伝達, 膜(MEMBRANE) , 査読無, 41, 2016,

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Ito H, Higuchi Y, Shimokawa N, Coarse-grained molecular dynamics simulation of charged lipid membranes:

Phase separation and morphological dynamics, Physical Review E , 査読有, 94, 2016, 042611 1-11.

Okamoto R, Shimokawa N, Komura S, Nano-domain formation in charged membranes: Beyond the Debye-

Huckel approximation, Europhysics Letters , 査読有, 114, 2016, 28002 1-6.

Shimokawa N, Himeno H, Hamada T, Takagi M, Komura S, Andelman D, Phase diagrams and ordering in

charged membranes: Binary mixtures of charged and neutral lipids, The Journal of Physical Chemistry B , 査

読有, 120, 2016, 6358-6367.

下川　直史、高木　昌宏, 生物、物理、数学の境界領域としての膜研究, 生物工学会誌, 査読無, 94, 2016, 746-

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Himeno H, Ito H, Higuchi Y, Hamada T, Shimokawa N, Takagi M, Coupling between pore formation and phase

separation in charged lipid membranes, Physical Review E , 査読有, 92, 2015, 062713 1-12.

Sugahara K, Shimokawa N, Takagi M, Destabilization of phase-separated structures in local anestheticcontaining

model biomembranes, Chem. Lett. , 査読有, 44, 2015, 1064-1606.

Shimokawa N, Nagata M, Takagi M, Physical properties of the hybrid lipid POPC on micrometer-sized

domains in mixed lipid membranes, Physical Chemistry Chemical Physics , 査読有, 17, 2015, 20882-20888.

15H00818 水上　進

Mizukami S, Kashibe M, Matsumoto K, Hori Y, Kikuchi K, Enzyme-Triggered Compound Release using

Functionalized Antimicrobial Peptide Derivatives, Chem. Sci., 査読有, 8, 2017, 3047-3053.

Mizukami S, Targetable Fluorescent Sensors for Advanced Cell Function Analysis, J. Photochem. Photobiol. C,

査読有, 30, 2017, 24-35.

Maeda H, Kowada T, Kikuta J, Furuya M, Shirazaki M, Mizukami S, Ishii M, Kikuchi　K, Real-time intravital

imaging of pH variation associated with osteoclast activity, Nat. Chem. Biol. , 査読有, 12, 2016, 579–585.

Sotoma S, Iimura J, Igarashi R, Hirosawa KM, Ohnishi H, Mizukami S, Kikuchi K, Fujiwara TK, Shirakawa M,

Tochio H, Selective Labeling of Proteins on Living Cell Membranes Using Fluorescent Nanodiamond Probes,

Nanomaterials , 査読有, 6, 2016, 56.

水上 進, 機能性ハイブリッドマテリアルの開発と生命科学への応用～高機能性イメージングプローブの創製に向

けて, 生命化学ニュースレター, 査読有, 49, 2015, 9-14.

Zeng ZH, Mizukami S, Fujita K, Kikuchi K, An Enzyme-Responsive Metal-Enhanced Near-Infrared Fluorescence

Sensor Based on Functionalized Gold Nanoparticles, Chem. Sci. , 査読有, 6 (8), 2015, 4934–4939.

15H00819 森島　圭祐

Yalikun, Y., Kanda, Y. & Morishima, K., A Method of Three-Dimensional Micro-Rotational Flow Generation for

Biological Applications, Micromachines, 査読有, 7, 2016, 140.

Yalikun, Y., Kanda, Y. & Morishima, K., Hydrodynamic vertical rotation method for a single cell in an open

space, Microfluid Nanofluid , 査読有, 20, 2016, 74.

Uesugi Kaoru, Shimizu Koshi, Akiyama Yoshitake, Hoshino Takayuki, Iwabuchi Kikuo, and Morishima Keisuke.

Contractile Performance and Controllability of Insect Muscle-Powered Bioactuator with Different

Stimulation Strategies for Soft Robotics, Soft Robotics . 査読有, 3, 2016, 13-22.

Shoji K, Akiyama Y, Suzuki M, Nakamura N, Ohno H, Morishima K, Biofuel Cell Backpacked Insect and Its

Application to Wireless Sensing, Biosensors and Bioelectronics , 査読有, 78, 2016, 390-395.

15H00824 相樂　隆正

相樂　隆正、諸岡　哲朗、河野　有映、村川　翔馬、許斐　梓、吉永　優汰、田原　弘宣, 水中の電極表面上にお

ける油滴や油相の電位制御, 信学技報, 査読無, 116, 2017, 9-11.

Morooka T, Murakawa S, Konomi A, Goto D, Sagara T, Potential-dependent morphological change

of n-hexadecane small droplets on a Au(1 1 1) electrode in aqueous solution: A voltammetric and

electrochemical fluorescence microscopic study, Journal of Electroanalytical Chemistry , 査読有, 779, 2016,

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諸岡　哲郎、相樂　隆正, 小さな電圧で液滴の大きな動きを狙う―低電圧で実現するエレクトロウェッティング,

化学, 査読無, 71, 2016, 66-67.

D01 計画班

T. Yamashita, T. Isokawa, F. Peper, I. Kawamata, M. Hagiya, Turing-Completeness of Asynchronous Non-

Camouflage Cellular Automata, Lecture Notes in Computer Science , 査読有, volume 10248, 2017, 187-199.

F. Takabatake, I. Kawamata, K. Sugawara, S. Murata, Discretization of Chemical Reactions in a Periodic

Cellular Space, New Generation Computing , 査読有, 2017, 1-11.

Kashida H, Kurihara A, Kawai H, Asanuma H, Orientation-dependent FRET system reveals differences in

structures and flexibilities of nicked and gapped DNA duplexes, Nucleic Acids Res., 査読有, 45(11), 2017,

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浅沼　浩之、樫田　啓, DNA 二重鎖による色素会合体の精密位置配向制御と光化学への展開, 固体物理, 査読有,

52, 2017, 149-158.

Murayama K, Asanuma H, Effect of Methyl Group on Acyclic Serinol Scaffold for Tethering Dyes on DNA

Duplex stability, ChemBioChem , 査読有, 18, 2017, 142-149.

樫田　啓、浅沼　浩之, DNA 二重鎖の高い安定性と直交性をもつ疑似塩基対の開発, 高分子論文集, 査読有, Vol.

74 No. 4, 2017, 257-264.

Kashida H, Asanuma H, Development of pseudo base-pairs on D-threoninol which exhibit various functions,

Bull. Chem. Soc. Jpn. , 査読有, 90, 2017, 475.

Asanuma H, Murayama K, Kamiya,Y, Kashida H, Design of photo-functional oligonucleotide by

"copolymerization" of natural nucleobases with base-surrogate prepared from acyclic scaffold, Polymer J. ,

査読有, 49, 2017, 279-289.

Arimura T, Do JH, Tanaka F, Electrochemically Switchable Molecular-Tweezers, J. Oleo Sci. , 査読有, 66(4),

2017, 419-423.

宮元　展義、加藤　利喜, 無機ナノシートの多彩な機能と応用, 科学と工業, 査読有, 91(4), 2017, 85-95.

Keitel Cervantes-Salguero, Ibuki Kawamata, Shin-ichiro M. Nomura, Satoshi Murata, Unzipping and Shearing

DNA with Electrophoresed Nanoparticle in Hydrogel, Physical Chemistry Chemical Physics , 査読有, 19(21),

2017, 13414-13418.

Yusuke Sato, Yuichi Hiratsuka, Ibuki Kawamata, Satoshi Murata, Shin-ichiro M. Nomura, Micrometer-sized

molecular robot changes its shape in response to signal molecules, Science Robotics , 査読有, 2(4), 2017,

eaal3735.

Fumi Takabatake, Ibuki Kawamata, Ken Sugawara, Satoshi Murata, Discretization of Chemical Reactions in a

Periodic Cellular Space, New Generation Computing , 査読有, 2017 年3 月17 日オンライン版, 2017, 1-11.

M. Hagiya, W. Yahiro, Implementation of Turing Machine Using DNA Strand Displacement, Lecture Notes in

Computer Science , 査読有, 10071, 2016, 161-172.

T. Isokawa, F. Peper, I. Kawamata, N. Matsui, S. Murata, M. Hagiya, Universal Totalistic Asynchonous Cellular

Automaton and Its Possible Implementation by DNA, Lecture Notes in Computer Science , 査読有, 9726,

2016, 182-195.

Satoshi Murata, Ibuki Kawamata, Shin-ichiro M. Nomura, How to Develop Students’ Creativity? ~A Case of

Student Competition of Biomolecular Design, Proceeding of IEEE-ICCSE2016 , 査読有, Aug, 2016, 13-20.

Ibuki Kawamata, Takuto Hosoya, Fumi Takabatake, Ken Sugawara, Shin-ichiro M. Nomura, Teijiro Isokawa,

Ferdinand Peper, Masami Hagiya, Satoshi Murata, Pattern Formation and Computation by Autonomous

Chemical Reaction Diffusion Model Inspired by Cellular Automaton, The Fourth International Symposiumon

Computing and Networking , 査読有 , 2016, 215-221.

Teijiro Isokawa, Ferdinand Pepper, Ibuki Kawamata, Nobuyuki Matsui, Satoshi Murata, Masami Hagiya, Discrete

DNA Reaction-Diffusion Model for Implementing Simple Cellular Automaton, Lecture Notes in Computer

Science , 査読有, 9726, 2016, 168-181.

Daisuke Kandatsu, Keitel Cervantes-Salguero, Ibuki Kawamata, Shogo Hamada, Shin-Ichiro M. Nomura, Kenzo

Fujimoto, Satoshi Murata, Reversible Gel-Sol Transition of Photo-Responsive DNA Gel, ChemBioChem , 査読有,

17, 2016, 1118-1121.

Nakasone Y, Ooi H, Kamiya Y, Asanuma H, Terazima M, Dynamics of Inter-DNA Chain Interaction of

Photoresponsive DNA, J. Am. Chem. Soc. , 査読有, 138, 2016, 9001-9004.

Aasanuma H, Niwa R, Akahane M, Murayama K, Kashida H, Kamiya Y, Strand-invading linear probe combined

with unmodified PNA, Bioorg. Med. Chem. , 査読有, 24, 2016, 4129-4137.

Kashida H, Morimoto K, Asanuma H, A stem-less probe using spontaneous pairing between Cy3 and

quencher for RNA detection, Sci. Technol. Adv. Mater. , 査読有, 17, 2016, 267-273.

Doi T, Kawai H, Murayama K, Kashida H, Asanuma H, Visible Light-Triggered Crosslinking of DNA Duplex by

Reversible [2+2] Photocycloaddition of Styrylpyrene, Chem. Eur. J ., 査読有, 22, 2016, 10533-10538.

Sugawara K, Doi Y, Collective Construction by Cooperation of Simple Robots and Intelligent Blocks, The 9th

International Conference on Intelligent Robotics and Applications , 査読有, 2016, 452-461.

MIYAMOTO N. & YAMAMOTO S, Inorganic Nanosheet Liquid Crystals: Self-Assembled Structures in

Dispersions of Two-Dimensional Inorganic Polymers (in Japanese), Koubunshi Ronbunshu, 査読有, 73,

2016, 262-280.

Malgras V, Kamachi Y, Nakato T, Yamauchi Y. & Miyamoto N, Recent Developments in Hybrid Hydrogels

Containing Inorganic Nanomaterials, Nanosci. Nanotechnol. Lett. , 査読有, 8, 2016, 355-359.

Sakthivel M, Sivakumar M, Chen SM, Hou,YS, Veeramani V, Madhu R. & Miyamoto N, A Facile Synthesis

of Cd(Oh)2-RGO Nanocomposites for the Practical Electrochemical Detection of Acetaminophen,

Electroanalysis , 査読有, 29, 2016, 280-286.

Veeramani V, Sivakumar M, Chen SM, Madhu R, Dai ZC. & Miyamoto N, A Facile Electrochemical Synthesis

Strategy for Cu2o (Cubes, Sheets and Flowers) Microstructured Materials for Sensitive Detection of

4-Nitrophenol, Analytical Methods , 査読有, 8, 2016, 5906-5910.

Sivakumar M, Madhu R, Chen SM, Veeramani V, Manikandan A, Hung WH, Miyamoto N. & Chueh YL, Low-

Temperature Chemical Synthesis of Cowo4 Nanospheres for Sensitive Nonenzymatic Glucose Sensor, J.

Phys. Chem. C , 査読有, 120, 2016, 17024-17028.

Shimasaki K, Yamaki T, Sawada S, Hiroki H, Maekawa Y. & Miyamoto N, Synthesis of Anisotropic Poly

(N-Isorpopylacrylamide) / Inorganic-Nanosheets Composite Gels by Gamma-Radiation-Induced

Polymerization, J. Nanosci. Nanotechnol. , 査読有, 16, 2016, 9231-9237.

Madhu R, Veeramani V, Chen SM, Veerakumar P, Liu SB. & Miyamoto N, Functional Porous Carbon-ZnO

Nanocomposites for High-Performance Biosensors and Energy Storage Applications, Phys. Chem. Chem.

Phys., 査読有, 18, 2016, 16466-16475.

村田　智, DNA ナノテクノロジーへの招待, 現代化学, 査読無, 541, 2016, 47-51.

村田　智, DNA オリガミとその応用, B&I バイオサイエンスとインダストリー, 査読無, 75(3), 2016, 197-202.

佐藤　佑介，瀧ノ上 正浩，野村 M. 慎一郎, BIOMOD:分子ロボティクスの次世代育成大会(解説）, 生物物理, 査読無,

56 (5), 2016, 290-292.

Yusuke Yonamine, Keitel Cervantes-Salguero, Kosuke Minami,　Ibuki Kawamata, Waka Nakanishi, Jonathan

P. Hillab, Satoshi Murata, Katsuhiko Ariga, Supramolecular 1-D polymerization of DNA origami through a

dynamic process at the 2-dimensionally confined air-water interface, Physical Chemistry Chemical Physics ,

査読有, 18, 2016, 12576-12581.

Ibuki Kawamata, Takuto Hosoya, Fumi Takabatake, Ken Sugawara, Shin-ichiro M. Nomura, Teijiro Isokawa,

Ferdinand Peper, Masami Hagiya, Satoshi Murata, Pattern Formation and Computation by Autonomous

Chemical Reaction Diffusion Model Inspired by Cellular Automaton, CANDAR , 査読有, 2016, 215-221.

Ken Sugawara, Yohei Doi, Collective construction of dynamic equilibrium structure by swarm robots,

Distributed Autonomous Robotic Systems: The 12th International Symposium , 査読有, 2016, 165-176.

Yusuke Yonamine, Keitel Abraham Cervantes, Kosuke Minami, Ibuki Kawamata, Waka Nakanishi, Jonathan P Hill,

Satoshi Murata and Katsuhiko Ariga, Supramolecular 1-D polymerization of DNA origami through a dynamic

process at the 2-dimensionally confined air-water interface, Phys. Chem. Chem. Phys. , 査読有, 18, 2016,

12576-12581.

村山　恵司，浅沼　浩之, 天然に存在しない非環状構造の核酸アナログ－人工の非環状骨格で神の設計した環状骨

格に挑む, 化学, 71, 2016, 2016.

Hiromu Kashida, Keiji Murayama and Hiroyuki Asanuma, Acyclic artificial nucleic acids with phosphodiester

bonds exhibit unique functions, Polymer J. , 査読有, 48, 2016, 781–786.

Mahadi Hasan, Akinori Nishimoto, Takashi Ohgita, Susumu Hama, Hiromu Kashida, Hiroyuki Asanuma, Kentaro

Kogure, Faint electric treatment-induced rapid endosomal escape for efficient delivery of functional

macromolecules into the cytoplasm, J. Control Release, 査読有, 228, 2016, 20-25.

Hiromu Kashida, Kazuhiro Morimoto, Hiroyuki Asanuma, A stem-less probe using spontaneous pairing

between Cy3 and quencher for RNA detection, Sci. Technol. Adv. Mater. , 査読有, 17, 2016, 267-273.

Masaru Mukai, Jung-Hee Do, Nobuyoshi Miyamoto, Takashi Arimura, A Belousov-Zhabotinsky Oscillator

Driven by a Water-Soluble MetalloPorphyrin, Chemistry Select , 査読有, 1, 2016, 877-878.

Kamachi Y, Bastakoti BP, Miyamoto N, Nakato T. & Yamauchi Y, Thermo-Responsive Hydrogels Containing

Mesoporous Silica toward Controlled and Sustainable Releases, Mater. Lett. , 168, 2016, 176-179.

Guegan R, Sueyoshi K, Anraku S, Yamamoto S. & Miyamoto N, Sandwich Organization of Non-Ionic Surfactant

Liquid Crystalline Phases as Induced by Large Inorganic K4Nb6O17 Nanosheets, Chem. Commun. , 52,

2016, 1594-1597.

Ken Sugawara, Yohei Doi, Collective Construction of Dynamic Structure Initiated by Semi-Active Blocks,

Proc. 2015 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS) , 査読有, 2015, 428-

433.

Junghoon Kim, Junwye Lee, Shogo Hamada, Satoshi Murata & Sung Ha Park, Self-replication of DNA rings,

Nature Nanotechnology , 査読有, 10, 2015, 528-553.

Yusuke Yonamine, Keitel Cervantes-Salguero, Waka Nakanishi, Ibuki Kawamata, Kosuke Minami, Hirokazu

Komatsu, Satoshi Murata, Jonathan P. Hill and Katsuhiko Ariga, In situ 2D-extraction of DNA wheels by 3D

through-solution transport, Phys. Chem. Chem. Phys ., 査読有, 17, 2015, 32122-32125.

Tetsuya Doi, Hiromu Kashida and Hiroyuki Asanuma, Efficiency of [2 + 2] photodimerization of various

stilbene derivatives within the DNA duplex scaffold, Org. Biomol. Chem , 査読有, 13, 2015, 4430-4437.

Hiromu Kashida, Takuya Osawa, Kazuhiro Morimoto, Yukiko Kamiya, Hiroyuki Asanuma, Molecular design of

Cy3 derivative for highly sensitive in-stem molecular beacon and its application to the wash-free FISH,

Bioorg. Med. Chem., 査読有, 23, 2015, 1758-1762.

Keiji Murayama, Yukiko Kamiya, Hiromu Kashida, and Hiroyuki Asanuma, Ultrasensitive Molecular Beacon

Designed with Totally Serinol Nucleic Acid (SNA) for Monitoring mRNA in Cells, ChemBioChem , 査読有, 16,

2015, 1298-1301.

Tetsuya Doi, Takumi Sakakibara, Hiromu Kashida, Yasuyuki Araki, Takehiko Wada, Hiroyuki Asanuma, Hetero-

Selective DNA-Like Duplex Stabilized by Donor-Acceptor Interactions, Chem. Eur. J. , 査読有, 21, 2015,

15974-15980.

Thomas Goldau, Keiji Murayama, Clara Brieke, Hiroyuki Asanuma, and Alexander Heckel, Azobenzene

C-Nucleosides for Photocontrolled Hybridization of DNA at Room Temperature, Chem. Eur. J. , 査読有, 21,

2015, 17870–17876.

Yukiko Kamiya, Kazuki Iishiba, Tetsuya Doi, Kouki Tsuda, Hiromu Kashida, and Hiroyuki Asanuma, Terminus-free

siRNA prepared by photo-crosslinking activated via slicing by Ago2, Biomater. Sci. , 査読有, 3, 2015, 1534-

1538.

樫田　啓，村山　恵司，浅沼　浩之, 新規人工核酸SNA を用いたRNA イメージング, 生体の科学, 66, 2015,

145-150.

Yukiko Kamiya, Hiroyuki Asanuma, re-organized guide RNA in Cas9 complex is ready for selection of the

target double-stranded DNA, ChemBioChem , 査読有, 16, 2015, 2273-2275.

Ummey Rayhan, Jung-Hee Do, Takashi Arimura, Takehiko Yamato, Reduction of carbonyl compounds by Raney

Ni-Al alloy, Al powder in the presence of noble metal catalysts in water, Comptes Rendus Chimie , 査読有, 18,

2015, 685-692.

Yamamoto S, Ohsedo Y, Yamada E, Sonoda K, Mita H. & Miyamoto N, Cultivation of Cellulose-Producing

Bacteria in the Nanosheet Liquid Crystal of Na-Fluorohectorite, Clay Sci. , 19, 2015, 73-77.

Song Y, Iyi N, Hoshide T, Ozawa TC, Ebina Y, Ma R, Miyamoto N. & Sasaki T, Accordion-Like Swelling of Layered

Perovskite Crystals Via Massive Permeation of Aqueous Solutions into 2d Oxide Galleries, Chem. Commun. ,

51, 2015, 17068-17071.

Li C, Jiang B, Miyamoto N, Kim JH, Malgras V. & Yamauchi Y, Surfactant-Directed Synthesis of Mesoporous Pd

Films with Per- Pendicular Mesochannels as Efficient Electrocatalysts, J. Am. Chem. Soc. , 137, 2015, 11558-

11561.

Bastakoti BP, Li Y, Imura M, Miyamoto N, Nakato T, Sasaki T. & Yamauchi Y, Polymeric Micelle Assembly with

Inorganic Nanosheets for Construction of Mesoporous Architectures with Crystallized Walls, Angew. Chem.

Int. Ed , 54, 2015, 4222-4225.

Kimura T, Shintate M. & Miyamoto N, In Situ Observation of the Evaporation-Induced Self-Assembling

Process of PS-b-PEO Diblock Copolymers for the Fabrication of Titania Films by Confocal Laser Scanning

Microscopy, Chem. Commun. , 51, 2015, 1230-1233.

Shaoyu Wang, Katsunobu Imai, and Masami Hagiya, An Approach to Constructing and Simulating Block

Cellular Automata by Gellular Automata, Third International Symposium on Computing and Networking , 査

読有, 2015, 442-448.

Masami Hagiya, Nathanael Aubert-Kato, Shaoyu Wang, and Satoshi Kobayashi, Molecular computers for

molecular robots as hybrid systems, Theoretical Computer Science , 査読有, 632, 2015, 4-20.

Kamiya Y. Takagi T. Ooi H. Ito H. Liang XG. Asanuma H, Synthetic gene involving azobenzene-tethered T7

promoter for the photocontrol of gene expression by visible light, ACS Synth. Biol ., 査読有, 4(4), 2015, 365-

370.

Goldau T. Murayama K. Brieke C. Steinwand S. Mondal P. Biswas M. Burghardt I. Wachtveitl J. Asanuma H. Heckel

A, Reversible photoswitching of RNA hybridization at room temperature with an azobenzene C-nucleoside,

Chem. Eur. J. , 査読有, 21, 2015, 2845-2854.

Murayama K. Kashida H. Asanuma H, Acyclic L-Threoninol Nucleic Acid (L-aTNA) with Suitable Structural

Rigidity Cross-pairs with DNA and RNA, Chem. Commun. , 査読有, 51, 2015, 6500-6503.

Asanuma H. Akahane M. Niwa R. Kashida H. Kamiya Y, Highly sensitive and robust linear probe for detection

of mRNA in cells, Angew. Chem. Int. Ed. , 査読有, 54, 2015, 4315-4319.

Keitel Cervantes-Salguero, Shogo Hamada, Shin-ichiro M. Nomura and Satoshi Murata, Polymorphic Ring-

Shaped Molecular Clusters Made of Shape-Variable Building Blocks, Nanomaterials , 査読有, 5, 2015, 208-

217.

Junghoon Kim, Junwye Lee, Shogo Hamada, Satoshi Murata and Sung Ha Park, Self-replication of DNA rings,

Nature Nanotechnology , 査読有, 2015, 1-7.

Shaoyu Wang, Katsunobu Imai, and Masami Hagiya, On the Composition of Signals in Gellular Automata,

Second International Symposium on Computing and Networking (CANDAR) , 査読有, 2014, 499-502.

Masami Hagiya, Shaoyu Wang, Ibuki Kawamata, Satoshi Murata, Teijiro Isokawa, Ferdinand Peper, Katsunobu

Imai, On DNA-Based Gellular Automata, Lecture Notes in Computer Science , 査読有, 8553, 2014, 177-189.

Masami Hagiya, Akihiko Konagaya, Satoshi Kobayashi, Hirohide Saito, and Satoshi Murata, Molecular Robots

with Sensors and Intelligence, Accounts of Chemical Research , 査読有, 47, 2014, 1681-1690.

Nathanael Aubert, Yannick Rondelez, Teruo Fujii, and Masami Hagiya, Enforcing delays in DNA computing

systems, Natural Computing , 査読有, 13, 2014, 559-572.

Takashi Arimura, Masaru Mukai, Self-Oscillating Gel Actuator Driven by Ferroin, Chemical Communications ,

査読有, 50, 2014, 5861-5863.

Suzuki N, Kamachi Y, Takai K, Kiba S, Kotani T, Sakka Y, Miyamoto N, Yamauchi Y, Effective Use of Mesoporous

Silica Filler: Comparative Study on Thermal Stability and Transparency of Silicone Rubbers Loaded with

Various Kinds of Silica Particles, Eur. J. Inorg. Chem. , 査読有, 2014, 2014, 2773-2778.

Yutaka Ohsedo, Masashi Oono, Kowichiro Saruhashi, Hisayuki Watanabe, Nobuyoshi Miyamoto, A new

composite thixotropic hydrogel composed of a low-molecular-weight hydrogelator and a nanosheet, RSC

Advances , 査読有, 4, 2014, 44837-44840.

Nobuyoshi Miyamoto, Kotaro Shimasaki, Kosuke Yamamoto, Morio Shintate, Yuichiro Kamachi, Bishnu Prasad

Bastakoti, Norihiro Suzuki, Ryuhei Motokawa, Yusuke Yamauchi, Three-Dimensional Mesoporous Silica as a

Topologically Crosslinking Filler for Poly(N-isopropylacrylamide) Hydrogel, Chem. Eur. J., 査読有, 20, 2014,

14955-14958.

Takumi Inadomi, Shogo Ikeda, Yasushi Okumura, Hirotsugu Kikuchi, Nobuyoshi Miyamoto, Anomalous thermoand

photo-responsive anisotropic deformation of poly(N-isopropylacrylamide) gel hybridized with liquid

crystalline inorganic nanosheets aligned by electric field, Macromol. Rapid Commun. , 査読有, 35, 2014,

1741-1746.

Bishnu Prasad Bastakoti, Yunqi Li, Masataka Imura, Nobuyoshi Miyamoto, Teruyuki Nakato, Takayoshi Sasaki,

Yusuke Yamauchi, Gigantic Swelling of Inorganic Layered Materials: A Bridge to Molecularly Thin Two-

Dimensional Nanosheets, J. Am. Chem. Soc ., 査読有, 136, 2014, 5491-5500.

Bishnu Prasad Bastakoti, Yunqi Li, Nobuyoshi Miyamoto, Hideki Abe, Jinhua Ye, Pavuluri Srinivasu, Yusuke

Yamauchi, Polymeric Micelle Assembly for Direct Synthesis of Functionalized Mesoporous Silica with Fully

Accessible Pt Nanoparticles toward Improved CO Oxidation Reaction, Chem. Commun , 査読有, 50, 2014,

9101-9104.

Asanuma H. Kashida H. Kamiya Y, De Novo Design of Functional Oligonucleotides with Acyclic Scaffolds,

Chem. Rec. , 査読有, 14, 2014, 1055-1069.

浅沼　浩之，栗原　綾子，樫田　啓, DNA 二重鎖を足場とした配向依存的FRET, 光化学, 45, 2014, 146-147.

Kamiya Y. Takai J. Ito H. Murayama K. Kashida H. Asanuma H, Enhancement of stability and activity of siRNA

by terminal substitution with Serinol Nucleic Acid (SNA), ChemBioChem , 査読有, 15, 2014, 2549-2555.

吉澤　慧，藤原　慶，野村 M. 慎一郎，村田　智, DNA ナノテクノロジーのためのアウトリーチツールの開発と評価,

形の科学会誌, 査読有, 29(2), 2014, 87-96.

Akira C. Saito, Toshihiko Ogura, Kei Fujiwara, Satoshi Murata, Shin-ichiro M. Nomura, Introducing Micrometer-

Sized Artificial Objects into Live Cells:A Method for Cell-Giant Unilamellar Vesicle Electrofusion, PLoS ONE ,

査読有, 9(9), 2014, e106853.

Aubert N, Mosca C, Fujii T, Hagiya M, Rondelez Y, Computer Assisted Design for Scaling Up Systems based on

DNA Reaction Networks, Journal of the Royal Society Interface , 査読有, 11, 2014.

Yukiko Kamiya, Hiroyuki Asanuma, Light-driven DNA nanomachine with a photoresponsive molecular

engine, Acc. Chem. Res. , 査読有, 47(6), 2014, 1663-1672.

Takashi Arimura, Masaru Mukai, Self-Oscillating Gel Actuator Driven by Ferroin, Chemical Communications ,

査読有, 50, 2014, 5861-5863.

Nathanael Aubert, Quang Huy Dinh, Masami Hagiya, Teruo Fujii, Hitoshi Iba, Nicolas Bredeche, and Yannick

Rondelez, Evolution of Cheating DNA-based Agents Playing the Game of Rock-Paper-Scissors, ECAL , 査読有,

2013, 1143-1150.

Masami Hagiya and Ibuki Kawamata, Towards Co-evolution of Information, Life and Artificial Life, Natural

Computing and Beyond, Proceedings in Information and Communications Technology , 査読有, 6, 2013, 39-

48.

Yukiko Kamiya, Anna Ito, Hiroshi Ito, Masaaki Urushihara, Junya Takai, Taiga Fujii, Xingguo Liang, Hiromu

Kashida, and Hiroyuki Asanuma, Selective labeling of mature RISC using a siRNA carrying fluorophore–

quencher pair, Chem. Sci. , 査読有, 4, 2013, 4016-4021.

Keiji Murayama, Yoshihiro Tanaka, Takasuke Toda, Hiromu Kashida, and Hiroyuki Asanuma, Highly Stable

Duplex Formation by Artificial Nucleic Acids Acyclic Threoninol Nucleic Acid (aTNA) and Serinol Nucleic

Acid (SNA) with Acyclic Scaffolds, Chem. Eur. J., 査読有, 19, 2013, 14151-14158.

Hiromu Kashida, Tetsuya Doi, Takumi Sakakibara, Takamitsu Hayashi, and Hiroyuki Asanuma, p Stilbazole

Moieties As Artificial Base Pairs for Photo-Cross-Linking of DNA Duplex, J. Am. Chem. Soc., 査読有, 135,

2013, 7960-7966.

Xingguo Liang, Mengguang Zhou, Kenjiro Kato, and Hiroyuki Asanuma, Photoswitch Nucleic Acid Catalytic

Activity by Regulating Topological Structure with a Universal Supraphotoswitch, ACS Synth. Biol. , 査読有, 2,

2013, 194-202.

宮元　展義, 粘土鉱物ナノシートコロイドの液晶性, 日本化学会研究会「低次元系光機能材料研究会」ニュースレ

ター, 4, 2013, 11-14.

Alina M. Simion, Takashi Arimura, Cristian Simion, Reaction of Cinnamaldehyde and Derivatives with Raney

Ni-Al Alloy and Al Powder in Water. Reduction or Oxido-Reduction?, Comptes Rendus Chimie , 査読有, 16,

2013, 476-481.

Ken Sugawara, Object Transportation by Simple Robots: Application of Brazil Nut Effect, Proc. of SICE

Annual Conference , 査読有, -, 2013, 2613-2618.

Ken Sugawara, An Object Manipulation by Swarm Robots Inspired by Granular Convection Phenomenon,

Proc. of 2013 IEEE/ SICE International Symposium on System Integration, 2013, 700-705.

D01計画班

25104501/15H00791 眞山　博幸

Paven M, Mayama H, Sekido T, Butt HJ, Nakamura Y, Fujii S, Delivery and Release of Materials Using Liquid

Marbles, Adv. Func. Mater. , 査読有, 26 (19), 2016, 3372-3379.

Paven M, Mayama H, Sekido T, Butt HJ, Nakamura Y, Fujii S, Liquid Marbles: Light-Driven Delivery and

Release of Materials Using Liquid Marbles, ADV FUNCT MATER, 査読有, 26, 2016, 3199-3206.

Kabir AMR, Inoue D, Afrin T, Mayama H, Sada K, Kakugo A, Buckling of Microtubules on a 2D Elastic Medium,

Sci. Rep. , 査読有, 5, 2015, 17222.

Kabir AMR, Inoue D, Kishimoto Y, Hotta J, Sasaki K, Kitamura N, J, Gong JP, Mayama H, Kakugo A, Drag force of

um-sized objects with different surface morphologies in flow wih small Reynolds number, Polym. J. , 査読有,

47, 2015, 564-570.

Hara Y, Mayama H, Yamaguchi Y, Fujimoto K, Activation energy of the Belousov-Zhabotinsky reaction in a

164

gel with Fe(bpy)3 catalyst, Chemistry Letters., 査読有, 43, 2014, 673-675.

Kabir AMR, Inoue D, Hamano Y, Mayama H, Sada K, Kakugo A, Biomolecular Motor Modulates Mechanical

Property of Microtuble, Biomacromolecules, 査読有, 15 , 2014, 1797-1805.

Hara Y, Mayama H, Morishima K, Generative Force of Self-Oscillating Gel, J. Phys. Chem. B, 査読有, 118 ,

2014, 2576-2581.

Hara Y, Fujimoto K, Mayama H, Self-Oscillation of Polymer Chains with an Fe(bpy)3 Catalyst Induced by the

Belousov-Zhabotinsky Reaction, J. Phys. Chem. B, 査読有, 118 , 2014, 608-612.

Hara Y, Yamaguchi Y, Mayama H, Switching the Belousov-Zhabotinsky reaction with a Strong-Acid-Free Gel, J.

Phys. Chem. B , 査読有, 118 , 2014, 634-638.

齊藤　里奈、鈴木　誠、前野　隆司、眞山　博幸、野々村 美宗, 人工皮膚表面の水の触感と摩擦特性, 計測自動制

御学会論文集, 査読有, 50 , 2014, 2-8.

Hara Y, Mayama H, Yamaguchi Y, Takenaka Y, Fukuda R, Direct Observation of Periodic Swelling and

Collapse of Polymer Chain Induced by the Belousov-Zhabotinsky Reaction, J. Phys. Chem. B , 査読有, 117 ,

2013, 14351-14357.

Hirose E, Mayama H, Miyauchi A, Does the aquatic invertebrate nipple array prevent bubble adhesion?: an

experiment using nanopillar sheets, Biology Letters , 査読有, 9, 2013, 20130552.

Naito T, Yamamoto H, Okuda K, Konishi K, Mayama H, Yamaguchi D, Koizumi S, Kubo K, Nakamura T, Magnetic

ordering of spin systems having fractal dimensions, Eur. Phys. J. B , 査読有, 85, 2013, 410-418.

Nishikawa N, Sakiyama S, Yamazoe S, Kojima Y, Nishihara E, Tsujioka T, Mayama H, Yokojima S, Nakamura S,

Uchida K, Photoinduced Self-Epitaxial Crystal Growth of a Diarylethene Derivative with Antireflection

Moth-Eye and Superhydrophobic Lotus Effect, Langmuir , 査読有, 29 (25), 2013, 8164-8169.

Nonomura Y, Seino E, Abe S, Mayama H, Preparation and Characterization of Fractal Elastomer Surfaces, J.

Oleo Sci. , 査読有, 62 , 2013, 587-590.

Oyama T, Mayama H, Nonomura Y, Wetting Dynamics of Oil-in-Water Emulsion on Agar Gel Surfaces, Chem.

Lett. , 査読有, 42 , 2013, 871-872.

25104502 古川　英光

Kabir MH, Ahmed K, Gong J, Furukawa H, The effect of cross linker concentration in the Physical properties

of Shape Memory Gel, SPIE 2015 , 9432, 2015, SS15-SSN04-13.

Kabir MH, Gong J, Watanabe Y, Makino M, Furukawa H, The Applications of Shape Memory Gel as a Smart

Material, Proceedings of the 12th Asia Pacific Physics Conference of JPS Conf. Proc. , 査読有, 2014, 0120481-

0120484.

Kabir MH, Watanabe Y, Gong J, Furukawa H, Characterization of shape memory gels using scanning

microscopic light scattering, SPIE Proceedings , 査読有, 8691, 2013, 1D1-1D7.

Kabir MH, Gong J, Watanabe Y, Makino M, Furukawa H, Hard-to-soft transition of transparent shape memory

gels and the first observation of their critical temperature studied with scanning microscopic light

scattering, Materials Letters , 査読有, 108, 2013, 239-242.

25104508 澤井　哲

Brzostowski JA, Sawai S, Rozov O, Liao X, Imoto D, Parent CA, Kimmel AR, Phosphorylation of chemoattractant

receptors regulates chemotaxis, actin reorganization and signal relay, J. Cell. Sci., 査読有, 126(20), 2013,

4614-4626.

Fujimoto K, Sawai S, A design principle of group-level decision making in cell populations, PLoS Comp. Biol. ,

査読有, 9(6), 2013, e1003110.

15H00796 福島　和樹

Basterretxea A, Haga Y, Sanchez-Sanchez A, Isik M, Irusta L, Tanaka M, Fukushima K, Sardon H, Biocompatibility

and hemocompatibility evaluation of polyether urethanes synthesized using DBU organocatalyst, EUR

POLYM J , 査読有, 84, 2016, 750-758.

Fukushima K, Biodegradable functional biomaterials exploiting substituted trimethylene carbonates and

organocatalytic transesterification, Polym. J. , 査読有, 48, 2016, 1103-1114.

Fukushima K, Poly (trimethylene carbonate)-based polymers engineered for biodegradable functional

biomaterials, Biomater. Sci. , 査読有, 4, 2016, 9-24.

15H00827 宮田　隆志

Uragami T, Fukuyama E, Miyata T, Selective removal of dilute benzene from water by poly(methyl

methacrylate)-graft-poly(dimethylsiloxane) membranes containing hydrophobic ionic liquid by

pervaporation, Journal of Membrane Science , 査読有, 510, 2016, 131-140.

Uragami T, Matsuoka Y, Miyata T, Permeation and separation characteristics in removal of dilute volatile

organic compounds from aqueous solutions through copolymer membranes consisted of poly(styrene)

and poly(dimethylsiloxane) containing a hydrophobic ionic liquid by pervaporation, Journal of Membrane

Science, 査読有, 506, 2016, 109-118.

Uragami T, Matsuoka Y, Miyata T, Removal of Dilute Benzene in Water through Ionic Liquid/Poly(vinyl

chloride) Membrnes by Pervaporation, J. Membrane Sci. Res. , 査読有, 2, 2016, 20-25.

Matsumoto K, Kawamura A, Miyata T, Conformationally Regulated Molecular Binding and Release of

Molecularly Imprinted Polypeptide Hydrogels That Undergo Helix-Coil Transition, Macromolecules , 査読有,

50(5), 2016, 2136-2144.

Naraprawatphong R, Kawanaka G, Hayashi M, Kawamura A, Miyata T, Development of Protein-Recognition

SPR Devices by Combination of SI-ATRP with Biomolecular Imprinting Using Protein Ligands, Molecular

Imprinting , 査読有, 4, 2016, 21-30.

Matsumoto K, Tiu BDB, Kawamura A, Advincula RC, Miyata T, QCM Sensing of Bisphenol A Using Molecularly

Imprinted Hydrogel/Conducting Polymer Matrix, Polym. J, 査読有, 48, 2016, 525-532.

宮田　隆志, 動的架橋を利用した刺激応答性ゲルの設計と応用, 膜, 査読無, 41, 2016, 226-232.

Matsumoto K, Kawamura A, Miyata T, Structural Transition of pH-responsive Poly(L-lysine) Hydrogel

Prepared via Chemical Crosslinking, Chem. Lett , 査読有, 44, 2015, 1284-1286.