Embedded Files
Basic Unix
August 17-18, 2024
Welcome to the
Basic Unix for Bioinformatics workshop!
▶ This workshop aims to introduce hands-on experiences on Unix command lines which could be applied for bioinformatics tasks.
▶ The contents include a fundamental of Unix-based file systems, basic Unix commands, Vi/Vim editor, and practical techniques for handling biological data files.
▶ Participants will also gain proficiency in writing shell scripts for managing multiple files and learn how to download files from World Wide Web.
▶ This workshop aims to introduce hands-on experiences on Unix command lines which could be applied for bioinformatics tasks.
▶ The contents include a fundamental of Unix-based file systems, basic Unix commands, Vi/Vim editor, and practical techniques for handling biological data files.
▶ Participants will also gain proficiency in writing shell scripts for managing multiple files and learn how to download files from World Wide Web.
Content
Windows Subsystem for Linux insallation
Introduction to
Unix or Linux
Unix file system
Basic command lines
Files and directories manipulation
File permission
Displaying file content
Retrieve files
from the www.
Compress and decompress file
Manipulating bioinformatics files content
The Unix vi/vim editor
and text manipulation
Shell scripts
The workshop is suitable for ...
The workshop is suitable for ...
any students, researchers, lecturers or general audiences
who have no (or little) programming background
who would like to
do coding for automatic tasks
who are interested in analyzing
high-throughput data
Tentative schedule
Tentative schedule
Day
Day
Date
Date
Time
Time
Content
Content
1
Aug 17, 2024
8:30 - 9:00
9:00 - 12:00
13:00 - 16:00
Registration
Introduction to Unix or Linux
Windows Subsystem for Linux (WSL) installation
Unix file system
Basic command lines
Files and directories manipulation
The Vi/Vim text editor
File permission
Check disk space
Basic command for displaying bioinformatics files
2
Aug 18, 2024
9:00 - 12:00
13:00 - 16:00
Retrieve Bioinformatics file from World Wide Web
Compress and decompress files
Bioinformatics file manipulation with real-world examples
Shell script: Syntax, Comment and Variables
Shell script: Control statements conditionals
Shell script: Control statements Loops
Bioinformatics software installation via Anaconda
Running bioinformatic software using shell scripts
* Workshop will be conducted in English
* Workshop will be conducted in English
You only need a laptop 💻 to learn in this course!
The minimum required specifications for the laptop*
The minimum required specifications for the laptop*
CPU: Intel core i5
or higher
RAM: 8GB
or higher
Available storage:
20GB or more
OS: Windows 10, macOS 10.14.x
or higher
*You need to bring your own laptop.
*You need to bring your own laptop.
LECTURERs
LECTURERs
Asst.Prof.Dr. Kanthida Kusonmano
Lecturer at Bioinformatics and Systems Biology Program, School of Bioresources and Technology, King Mongkut’s University of Technology Thonburi (KMUTT)
Expertise : Bioinformatics, High-throughput data analysis, Microbiome analysis
Dr. pichahpuk uthaipaisanwong
Researcher at Systems Biology and Bioinformatics Research Group,
King Mongkut’s University of Technology Thonburi (KMUTT)
Expertise : Bioinformatics, High throughput data analysis of
prokaryotic genome, Microbiome and Metagenome analysis
VENUE
VENUE
room BT-209, 2nd floor,
School of Bioresources and Technology,
KMUTT BANG KHUN THiAN CAMPUS
room BT-209, 2nd floor,
School of Bioresources and Technology,
KMUTT BANG KHUN THiAN CAMPUS
What will you get ?
What will you get ?
Windows subsystem installed
Basic command-line skills
that can be applied to the bioinformatics task
A certificate of attendance will be provided after the workshop
(of those who attend >80% and get through hands-on)
WORKSHOP FEE
Special promotion !
Discount 500฿ for alumni*
Early-bird Within August 9, 2024
Alumni* = The individual who previously participated in practical training workshops organized by the Bioinformatics & Systems Biology program, School of Bioresources and Technology & School of Information Technology, King Mongkut's University of Technology Thonburi.
Limited for
15 seats ONLY!
(first come first serve)
Early-bird Within August 9, 2024
Deadline August 16, 2024
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