Microbiome
Data Analytics Bootcamp #2
Analyze microbiome data with your own hands
Embedded Files
Microbiome
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October 15-18 and 21-22, 2024
Welcome to the Microbiome Data Analytics Bootcamp!
▶ This intensive onsite bootcamp is your gateway to investigate microbial communities from high-throughput amplicon sequencing data.
▶ You will learn step-by-step from basic concepts and technologies for microbiome analysis, software installation, bioinformatics data analysis from data preprocessing to downstream analyses, and data interpretation.
▶ You could bring your own data for interactive hands-on sessions or experience real-world datasets, with close-up guidance from experienced staff.
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🗓️ October 2024
📍 School of Bioresources and Technology, King Mongkut's University of Technology Thonburi (KMUTT), Bang Khun Thian Campus, Bangkok, Thailand
This workshop explores basic concepts of
amplicon microbiome (e.g. 16S rRNA gene) data analysis
including :
This workshop explores basic concepts of
amplicon microbiome (e.g. 16S rRNA gene) data analysis
including :
Material preparation and data preprocessing
Material preparation and data preprocessing
Program installation
on your own laptop
Basis of microbiome technologies and applications
Data quality assessment
Data quality filtering
Diversity and downstream analyses
Diversity and downstream analyses
Taxonomic profiling
Diversity analysis
Differential
abundance analysis
Functional analysis
All concepts will be demonstrated step by step through hands-on sessions.
All concepts will be demonstrated step by step through hands-on sessions.
Tentative schedule
Tentative schedule
Day
Day
Date
Date
Time
Time
Content
Content
1
October 15, 2024
8:30 - 9:00
9:00 - 12:00
13:00 - 16:00
Registration
Course introduction: Introduction to microbiome technologies and its applications,
Overview of microbiome data analysis: what can we do & get from the data?
Basic command lines and platform installation
2
October 16, 2024
9:00 - 12:00
13:00 - 16:00
Project proposal presentation
Software for microbiome analysis installation, and microbiome data preparation
3
October 17, 2024
9:00 - 12:00
13:00 - 16:00
Amplicon-based microbiome data & quality assessment
Data preprocessing & Taxonomic clustering (Amplicon sequence variant)
4
October 18, 2024
9:00 - 12:00
13:00 - 16:00
Taxonomic assignment & Data normalization
Diversity analysis
5
October 21, 2024
9:00 - 12:00
13:00 - 16:00
Differential abundance analysis
Functional prediction analysis & Microbial network concept
6
October 22, 2024
9:00 - 12:00
13:00 - 16:00
Project final presentation (data interpretation, discussion & conclusion)
Closing ceremony: Microbiome diet (enjoy healthy food with microbiome) *
* Special speaker: Assoc. Prof. Dr. Supapon Cheevadhanarak
Note 1: The course will be in English.
Note 2: Lunch and coffee breaks will be provided.
Note 3: The schedule and content may be adjusted for appropriateness without prior notice.
You only need a laptop 💻 to learn in this course!
The minimum required specifications for the laptop
The minimum required specifications for the laptop
CPU: Intel core i5
or higher
RAM:
8GB or higher
Available storage:
40GB or more
OS: Windows 10, macOS 10.14.x
or higher
Why us ?
Why us ?
1. Step by step start from zero
Understand from basic concepts, perform data analysis
and interpret microbiome results.
2. Bring your own data
or learn from real-world dataset
You could bring your own data (recommended ≤20 samples for 8 GB RAM & ≤30 samples for 16 GB RAM) or use real-world datasets for interactive hands-on sessions to get the analysis done through the course.
3. Project-based learning
with hands-on exercises
Perform microbiome analysis through research-based project with your own biological problem and share with your classmate.
4. Semi-private guidance
by experienced team
All sessions throughout the course will be close-up guided from experienced bioinformatics staff (>10 years).
What will you get ?
What will you get ?
Software installed on your laptop
Taxonomic classifier model
Ready to analyze the next data
A certificate of attendance will be provided after the workshop
(of those who attend >80% and get through hands-on)
A certificate of attendance will be provided after the workshop
(of those who attend >80% and get through hands-on)
LECTURER
LECTURER
Bioinformatics and Systems Biology Program, School of Bioresources and Technology, King Mongkut’s University of Technology Thonburi (KMUTT)
Expertise : Microbiome analysis, High-throughput data analysis, Bioinformatics
SPECIAL SESSION: MICROBIOME DIET FOR YOUR SECOND BRAIN
SPECIAL SESSION: MICROBIOME DIET FOR YOUR SECOND BRAIN
System Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute,
King Mongkut’s University of Technology Thonburi (KMUTT)
Expertise : Human gut microbiome, Plant microbiome, Gene Technology, Gene Manipulation
VENUE
VENUE
A3-233, 2nd floor, School of Bioresources and Technology,
King Mongkut's University of Technology Thonburi (KMUTT) Bang Khun Thian campus
A3-233, 2nd floor, School of Bioresources and Technology,
King Mongkut's University of Technology Thonburi (KMUTT) Bang Khun Thian campus
WORKSHOP FEE
WORKSHOP FEE
Early-bird Within October 1, 2024
Alumni* = The individual who previously participated in practical training workshops organized by the Bioinformatics & Systems Biology program, School of Bioresources and Technology & School of Information Technology, King Mongkut's University of Technology Thonburi.
Limited for
10 seats ONLY!
(first come, first serve)
Deadline October 10, 2024
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