Microbiome
Data Analysis Bootcamp
[ Analyze microbiome data with your own hands ]
Embedded Files
Microbiome
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October 2-4 and 9-10, 2023
Welcome to the Microbiome Data Analysis Bootcamp!
▶ This intensive onsite bootcamp is your gateway to investigate microbial communities from high-throughput amplicon sequencing data.
▶ You will learn step-by-step from basic concepts and technologies for microbiome analysis, software installation, bioinformatics data analysis from data preprocessing to downstream analyses, and data interpretation.
▶ You could bring your own data for interactive hands-on sessions or experience real-world datasets, with close-up guidance from experienced staff.
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🗓️ October 2-4 and 9-10, 2023
📍 School of Bioresources and Technology, King Mongkut's University of Technology Thonburi (KMUTT), Bang Khun Thian Campus, Bangkok, Thailand
This workshop explores basic concepts of
amplicon microbiome (e.g. 16S rRNA gene) data analysis
including :
This workshop explores basic concepts of
amplicon microbiome (e.g. 16S rRNA gene) data analysis
including :
Material preparation and data preprocessing
Material preparation and data preprocessing
Program installation
Basis of microbiome technologies and applications
Data quality assessment
Data quality filtering
Diversity and downstream analyses
Diversity and downstream analyses
Taxonomic profiling
Diversity analysis
Differential
abundance analysis
Functional analysis
All concepts will be demonstrated step by step through hands-on sessions.
All concepts will be demonstrated step by step through hands-on sessions.
Schedule
Schedule
Day
Day
Date
Date
Time
Time
Content
Content
1️
Oct 2, 2023
8:30 - 9:00
9:00 - 12:00
.
13:00 - 16:00
Registration
Introduction to microbiome technologies and its applications
Overview of microbiome data analysis: what can we do & get from the data?
Basic command lines and software installation
2️
Oct 3, 2023
9:00 - 12:00
13:00 - 16:00
Microbiome project proposal presentation
Amplicon-based microbiome data & quality assessment
3️
Oct 4, 2023
9:00 - 12:00
13:00 - 16:00
Data preprocessing
Taxonomic identification (ASV-based; ASV=Amplicon Sequence Variant)
4️
Oct 9, 2023
9:00 - 12:00
13:00 - 16:00
Diversity analysis
Differential abundance & functional analyses
5️
Oct 10, 2023
9:00 - 12:00
13:00 - 16:00
Microbiome project final presentation (data interpretation, discussion & conclusion)
Closing ceremony: Microbiome meal (enjoy healthy food with microbiome) *
* Special speaker: Assoc. Prof. Dr. Supapon Cheevadhanarak
Note 1: The course will be in English.
Note 2: Lunch and coffee breaks will be provided.
Note 3: The schedule may change as needed.
You only need a laptop 💻 to learn in this course!
The minimum required specifications for the laptop
The minimum required specifications for the laptop
CPU: Intel core i5
or higher
RAM:
8GB or higher
Available storage:
40GB or more
OS: Windows 10, macOS 10.14.x
or higher
Why us ?
Why us ?
1. Step by step start from zero
Understand from basic concepts, perform data analysis
and interpret microbiome results.
2. Bring your own data
or learn from real-world dataset
You could bring your own data (recommended ≤20 samples for 8 GB RAM & ≤30 samples for 16 GB RAM) or use real-world datasets for interactive hands-on sessions to get the analysis done through the course.
3. Project-based learning
with hands-on exercise
Perform microbiome analysis through research-based project with your own biological problem and share with your classmate.
4. Semi-private guidance
by experienced team
All session throughout the course will be close-up guided from experienced bioinformatics staff (>10 years).
What will you get ?
What will you get ?
Software installed
Taxonomic classifier model
Ready to analyze the next data
A certificate of attendance will be provided after the workshop
(of those who attend >80% and get through hands-on)
A certificate of attendance will be provided after the workshop
(of those who attend >80% and get through hands-on)
LECTURER
LECTURER
Bioinformatics and Systems Biology Program, School of Bioresources and Technology, King Mongkut’s University of Technology Thonburi (KMUTT)
Expertise : Microbiome analysis, High-throughput data analysis, Bioinformatics
VENUE
VENUE
BT-138, 1st floor, School of Bioresources and Technology,
King Mongkut's University of Technology Thonburi (KMUTT) Bang Khun Thian campus
BT-138, 1st floor, School of Bioresources and Technology,
King Mongkut's University of Technology Thonburi (KMUTT) Bang Khun Thian campus
WORKSHOP FEE
WORKSHOP FEE
Student 🎓
Student 🎓
Early-bird 19,500 THB
Normal 23,900 THB
General 🧑
General 🧑
Early-bird 23,900 THB
Normal 26,900 THB
Early-bird Within September 22, 2023
Limited for
10 seats ONLY!
(first come first serve)
Deadline September 26, 2023
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