Mina Bizic*, Danny Ionescu*, Siyuan Wang, Futing Zhang, Yeala Shaked. Phenotypic variability between closely related Trichodesmium strains as a means to making the most of heterogeneous microenvironments.
Jacobson Y, Alon Angert A, Morag N, and Shaked Y. Aerosol iron and phosphorus release to seawater: role of ligand and reductive dissolution.
Yeala Shaked, Futing Zhang*, Antonio Colussi*, Ana Esther Mijovilovich, Meri Eichner, Siyuan Wang, Coco Koedooder, Ondrej Prasil, Syed Nadeem Hussain Bokhar, and Hendrik Küpper. Contact-dependent iron uptake from dust revealed by elemental analysis of single Trichodesmium colonies. L&O. In review
Anna-Neva Visser, Futing Zhang, Lior Guttman, Matan Masasa, Siyuan Wang, Coco Koedooder, and Yeala Shaked. 2025. Unveiling the P-solubilizing potential of bacteria enriched from natural colonies of Red Sea Trichodesmium spp. Science of the Total Environment. 963, 178446. PDF
Robert F. Strzepek, Pauline Latour, Michael J. Ellwood, Yeala Shaked, and Philip W. Boyd, Microbial competition for iron determines its availability to the Ferrous Wheel. The ISME Journal, wraf015, https://doi.org/10.1093/ismejo/wraf015
Futing Zhang, Siyuan Wang, Anna-Neva Visser, Coco Koedooder, Meri Eichner, O Roger Anderson, Sonya T Dyhrman, and Yeala Shaked. 2024. Recurrent association between Trichodesmium colonies and calcifying amoebae. ISME communications. Vol 4(1), ycae137. PDF
Yeala Shaked*, Benjamin S. Twining*, Thomas J. Browning, Coco Koedooder, Chana F. Kranzler. 2024. Trace Metal Biogeochemistry in the Ocean: From Chemical Principles to Biological Complexity. Treatise of Geochemistry (book chapter). PDF
Karl J. Romanowicz, Futing Zhang, Siyaun Wang, Dušan Veličković, Rosalie K Chu, Yeala Shaked, and Rene M Boiteau. 2024. Single-colony MALDI mass spectrometry imaging reveals spatial differences in metabolite abundance between natural and cultured Trichodesmium morphotypes. mSystems 0:e01152-24. PDF
Whitby, H., Park, J., Shaked, Y., Boiteau, R., Buck, K. N., Bundy, R. 2024. New insights into the organic complexation of bioactive trace metals in the global ocean from the GEOTRACES era. Oceanography. (review). PDF
Siyuan Wang, Futing Zhang, Coco Koedooder, Odeta Qafoku, Subhajit Basu, Stephan Krisch, Anna‐Neva Visser, Meri Eichner, Nivi Kessler, Rene M Boiteau, Martha Gledhill, and Yeala Shaked. 2024. Costs of Dust Collection by Trichodesmium: Effect on Buoyancy and Toxic Metal Release. Journal of Geophysical Research: Biogeosciences. PDF
Yeala Shaked, Dirk de Beer, Siyuan Wang, Futing Zhang, Anna-Neva Visser, Meri Eichner and Subhajit Basu. 2023. Co-acquisition of mineral-bound iron and phosphorus by natural Trichodesmium spp. colonies. Limnology and Oceanography. PDF
Meri Eichner, Keisuke Inomura, Juan José Pierella Karlusich, and Yeala Shaked. Better together? Lessons on sociality from Trichodesmium. 2023. Trends in Microbiology. PDF
Coco Koedooder, Futing Zhang, Siyuan Wang, Subhajit Basu, Sheean T Haley, Nikola Tolic, Carrie D Nicora, Tijana Glavina del Rio, Sonya T Dyhrman, Martha Gledhill, Rene M Boiteau, Maxim Rubin-Blum, and Yeala Shaked. 2023. Taxonomic distribution of metabolic functions in bacteria associated with Trichodesmium consortia. mSystems. 2023 Nov 2:e0074223. PDF
Wang S, Kessler N, Koedooder C, Zhang F, Shi D and Shaked Y. 2022. Colonies of the marine cyanobacterium Trichodesmium optimize dust utilization by selective collection and retention of nutrient-rich particles. iScience, 103587. PDF
Qiu GW*, Koedooder C*, Qiu, BS, Shaked Y and Keren N. 2022. Iron transport in cyanobacteria - from molecules to communities. Trends in Microbiology. PDF
Coco Koedooder*, Etai Landou, Futing Zhang, Siyuan Wang, Subhajit Basu, Ilana Berman-Frank, Yeala Shaked and Maxim Rubin-Blum. 2022. Metagenomes of Red Sea subpopulations challenge the use of morphology and marker genes to assess Trichodesmium diversity. Frontiers in Microbiology-Aquatic Microbiology. PDF
Shaked Y, Twining B , Tagliabue A , and Maldonado MT. 2021. Probing the bioavailability of dissolved iron to ocean phytoplankton using in situ single cell iron quotas. Global Biogeochemical Cycles. PDF
Shaked Y, Buck KN, Mellett T, and Maldonado MT. 2020. Insights into the bioavailability of oceanic dissolved Fe from phytoplankton uptake kinetics. The ISME Journal, doi.org/10.1038/s41396-020-0597-3. PDF
Kessler N, Kraemer SM, Shaked Y and Schenkeveld WDC. 2020. Investigation of siderophore-promoted and reductive dissolution of dust in marine microenvironments such as Trichodesmium colonies. Frontiers Marine Sciences. DOI:10.3389/fmars.2020.00045. PDF
Kessler N, Armoza-Zvuloni R, Basu S, Wang S, Weber PK, Stuart RK, and Shaked Y. 2020. Selective collection of iron-rich dust particles by natural Trichodesmium colonies. The ISME Journal, 14(1):91-103. doi: 10.1038/s41396-019-0505-x, PDF
Eichner MJ, Basu S, Wang S, de Beer D, and Shaked Y. 2020. Mineral iron dissolution in Trichodesmium colonies: The role of O2 and pH microenvironments. Limnology and Oceanography. doi.org/10.1002/lno.11377. PDF
Eichner MJ, Basu S, Gledhill M, de Beer D, and Shaked Y. 2019. Hydrogen dynamics in Trichodesmium colonies and their potential role in mineral iron acquisition. Frontiers in Microbiology, 10(1565). doi: 10.3389/fmicb.2019.01565. PDF
Basu S, Gledhill M, de Beer D. Matondkar SG and Shaked Y. 2019. Colonies of marine cyanobacteria Trichodesmium interact with associated bacteria to acquire iron from dust. Communication Biology, 2(1), 1-8. doi: 10.1038/s42003-019-0534-z PDF
Gledhill M, Basu S, and Shaked Y. 2019. Metallophores associated with Trichodesmium erythraeum colonies from the Gulf of Aqaba. Metallomics, 11(9), 1547-1557. doi: 10.1039/C9MT00121B, PDF
Basu S and Shaked Y. 2018. Mineral iron utilization by natural and cultured Trichodesmium and associated bacteria. Limnology and Oceanography, 63: 2307-2320. doi:10.1002/lno.10939, PDF
Torfstein A, Teutsch N, Tirosh O, Shaked Y Rivlin T, Zipori A, Stein M, Lazar B, and Erel Y. 2017. Chemical characterization of atmospheric dust from a weekly time series in the north Red Sea between 2006 and 2010. Geochimica et Cosmochimica Acta, 211: 373-393. PDF
Armoza-Zvuloni R., Schneider A., Sher, D., and Shaked Y. 2016. Rapid Hydrogen Peroxide release from the coral Stylophora pistillata during feeding and in response to chemical and physical stimuli. Scientific Reports, 6 #21000. PDF
Armoza-Zvuloni R., Schneider A., and Shaked Y. 2016. Rapid release of Hydrogen Peroxide during coral-bacteria interactions. Frontiers in Marine Sciences, 3 (1142), doi:10.3389/fmars.2016.00124. PDF
Kranzler, C., Kessler, N., Keren, N. and Shaked Y. 2016. Enhanced ferrihydrite dissolution by a unicellular, planktonic cyanobacterium: insights into the bioavailability of particulate iron. Environmental Microbiology and Environmental Microbiology Reports. doi:10.1111/1462-2920.13496. PDF
Schoffman H, Lis H, Shaked Y and Keren N. 2016. Iron–Nutrient Interactions within Phytoplankton. Frontiers in Plant Sciences, 7(1223). doi: 10.3389/fpls.2016.01223. PDF
Lis, H, Shaked, Y., Kranzler, C., Keren, N. and Morel, F. M. M. 2014. Iron bioavailability to phytoplankton - an empirical approach. The ISME Journal, 1-11. doi:10.1038/ismej.2014.199. PDF
Lis, H., Kranzler, C., Keren, N., and Shaked Y. 2015. A comparative study of iron uptake rates and mechanisms amongst marine and fresh water cyanobacteria. Life (special issue-Cynaobacteria: Ecology, Physiology and Genetics). http://www.mdpi.com/2075-1729/5/1/841. PDF
Armoza-Zvoluni, R and Shaked Y. 2014. Release of H2O2 and antioxidants by the coral Stylophora pistillata to its external milieu. Biogeosciences, 11(17): 4587-4598. PDF
Horwitz, R., Borell, E., M., Fine, M., and Shaked Y. 2014. Trace element profiles of the sea anemone Anemonia viridis living nearby a natural CO2 vent. PeerJ 2: e538. PDF
Kranzler, C., Lis, H., Finkel O. M, Schmetterer G, Shaked Y, Keren N. 2013. Coordinated Transporter Activity Shapes High Affinity Iron Acquisition in Cyanobacteria. The ISME Journal, doi: 10.1038/ismej.2013.161 PDF
Amrani, A, Said-Ahmad W, Shaked Y, Kiene R. P . 2013. Sulfur isotope homogeneity of oceanic DMSP and DMS. Proceedings of the National Academy of Sciences USA, 110(46): 18413-18418. PDF
Shaked, Y and Armoza-Zvoluni, R. 2013. Dynamics of hydrogen peroxide in a coral reef: sources and sinks. Journal of Geophysical Research: Biogeosciences, 118: 1793–1801, doi:10.1002/2013JG002483. PDF
Shaked, Y and Rose. A. 2013. Seas of Superoxide. Science, 430: 1176-1177. (Invited perspective). PDF
Shaked, Y. and Lis H. 2012. Disassembling iron availability to phytoplankton. Frontiers in Microbiological Chemistry, 3:123. doi: 10.3389/fmicb.2012.00123. (Invited review and synthesis). PDF
Meeder, E ,. Mackey, K. R. M , Paytan, A., Shaked, Y., Iluz, D., Stambler, N., Rivlin, T., Post, A.F., Lazar, B. 2012. Nitrite dynamics in the open ocean—clues from seasonal and diurnal variations. Marine Ecology Progress Series, 453:11-26. PDF
Rubin, M., Berman-Frank, I., Shaked, Y. 2011. Dust- and mineral-iron utilization by the marine dinitrogen-fixer Trichodesmium. Nature Geosciences 4(8): 529–534. PDF
Kranzler, C., Lis, H. Shaked, Y., Keren, N. 2011. The role of reduction in iron uptake processes in a unicellular, planktonic cyanobacterium. Environmental Microbiology, doi: 10.1111/j.1462-2920.2011.02572.x. PDF
Shaked, Y., Harris, R., Kedem-Klein, N. 2010. Hydrogen Peroxide photocycling in the Gulf of Aqaba. Environmental Science and Technology, 44(9): 3238–3244. PDF
Saragosti, E., Tchernov, D., Katsir, A., Shaked, Y. 2010. Extracellular production and degradation of superoxide in the coral Stylophora pistillata and cultured Symbiodinium PLoS ONE 5(9): e12508. doi:10.1371/journal.pone.0012508. PDF
Lis, H. and Shaked, Y. 2009. Probing the bioavailability of organically bound iron – a case study in the Synechococcus rich waters of the Gulf of Aqaba. Aquatic Microbial Ecology, 56(2-3):241-253. PDF.
Morel, F. M. M., Kutska, A. B., Shaked, Y. 2008. The role of unchelated Fe in the iron nutrition of phytoplankton, Limnology and Oceanography. 53(1): 400-404. PDF
Castruita, M., Shaked, Y., Elmegreen, L. A., Stiefel, E. I., Morel, F. M. M. 2008. Availability of iron from iron storage proteins to marine phytoplankton, Limnology and Oceanography, 53(3): 890-899. PDF
Shaked, Y. 2008. Iron redox dynamics in the surface waters of the Gulf of Aqaba, Red Sea. Geochimica et Cosmochimica Acta, 72: 1540-1554. PDF
Shcolnick, S., Shaked, Y., Keren, N. 2007. A role for mrgA, a DPS family protein, in the internal transport of Fe in the cyanobacterium Synechocystis sp. PCC6803, Biochimica et Biophysica Acta, 814-819. PDF
Xu, Y., Tang D., Shaked, Y., Morel, F. M. M. 2007. Zinc, cadmium, and cobalt inter-replacement and relative use efficiencies in the coccolithophore Emiliania huxleyi. Limnology and Oceanography, 52(5): 2294-2305. PDF
Castruita, M., Elmegreen, L. A., Shaked, Y., Stiefel, E. I., Morel, F. M. M. 2007. Comparison of the kinetics of iron release from a marine (Trichodesmium Erythraeum) Dps protein and mammalian ferritin in the presence and absence of ligands. Journal of Inorganic Biochemistry, 101(11-12): 1686-1691. PDF
Shaked, Y., Xu, Y., Leblanc, K., Morel, F. M. M., 2006. Zinc availability and alkaline phosphatase activity in Emiliania huxleyi: Implications for Zn-P co-limitation in the ocean, Limnology and Oceanography, 51(1): 299-309. PDF
Xu, Y., Wahlund, T. M, Feng, L., Shaked, Y., Morel, F. M. M. 2006. A novel alkaline phosphatase in the coccolithophore Emiliania huxleyi and its regulation by phosphorus, Journal of Phycology, 42(4): 835-844. PDF
Shaked, Y., Kutska, A. B., and Morel, F. M. M., 2005. A general kinetic model for iron acquisition by eukaryotic phytoplankton, Limnology and Oceanography, 50(3): 872-882. PDF
Kutska, A. B., Shaked, Y., Milligan, A. J., King W. D., and Morel, F. M. M. 2005. Extracellular production of superoxide by marine diatoms: contrasting implications for Fe redox chemistry and bioavailability, Limnology and Oceanography, 50(4): 1172-1180. PDF
Shaked, Y., Erel, Y., Sukenik, A., 2004. The biogeochemical cycle of iron and associated elements in Lake Kinneret, Geochimica et Cosmochimica Acta, 68(7): 1439-1451. PDF
Shaked, Y., Kutska, A. B, Morel, F. M. M., and Erel, Y., 2004. Simultaneous determination of iron reduction and uptake by Phytoplankton, Limnology and Oceanography Methods 2: 137-145. PDF
Shaked, Y., Erel, Y., Sukenik, A., 2002. Phytoplankton mediated redox cycle of iron in the epilimnion of Lake Kinneret, Environmental Science and Technology, 36: 460-467. PDF
Berman-Frank, I., Cullen, J. T., Shaked, Y., Sherrell, R. M. and Falkowski, P.G., 2001. Iron availability, cellular iron-quotas and nitrogen fixation in Trichodesmium, Limnology and Oceanography, 46(6): 1249-1260. PDF
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