Pre-Workshop
Pre-Workshop
Embedded Files
Send cell pellets
Day 1-2: Wetlab
Day 1-2: Wetlab
HMW DNA ExtractionNanopore library prep and sequencing
Day 3: Computational
Day 3: Computational
Genome Assembly with KBase
Post-Workshop
Post-Workshop
Publishing
A three-day workshop on microbial genome sequencing and assembly using long read data
A three-day workshop on microbial genome sequencing and assembly using long read data
The workshop is over, but you can email Lauren Lui (lmlui at lbl dot gov) if you have questions.
The goal of this event is to introduce people to how long read sequencing can improve their microbial genomes
The goal of this event is to introduce people to how long read sequencing can improve their microbial genomes
By the end of the workshop, the participants will have learned
How to extract high-molecular weight (HMW) DNA
How to make nanopore sequencing libraries
How to use DOE Systems Biology Knowledgebase (KBase) apps to assemble and annotate their genomes, and more
Using KBase to publish genomes as microbiology resource announcements
Workshop organizers, instructors, and TAs
Workshop organizers, instructors, and TAs
Lauren Lui
Lauren Lui
Research Scientist, LBNL
Elisha Wood-Charlson
Elisha Wood-Charlson
Engagement Lead, KBase
Torben Nielsen
Torben Nielsen
Computer Scientist, LBNL
John-Marc Chandonia
John-Marc Chandonia
Research Scientist, LBNL
Hira Lesea
Hira Lesea
Research Associate, LBNL
Ben Allen
Ben Allen
Outreach Coordinator, KBase
Sean Jungbluth
Sean Jungbluth
Research Scientist, LBNL
Andrew Wilson
Andrew Wilson
Research Associate, PNNL
Astrid Terry
Astrid Terry
ENIGMA Project Manager, LBNL
Evelyn Zheng
Evelyn Zheng
Undergraduate researcher, UC Berkeley
Location
Location
Lawrence Berkeley National Laboratory, Building 977
Lawrence Berkeley National Laboratory, Building 977
This workshop will take place at the Aquatic Park location of LBNL, located in West Berkeley.
This workshop will take place at the Aquatic Park location of LBNL, located in West Berkeley.
Let us know if you'd like to attend!
Let us know if you'd like to attend!
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