IRRI SERVICE LABORATORIES
provides world class, efficient and integrated laboratory testing services and expertise
or email: gsl@irri.org
Genotyping
Genotyping services are performed in-house or outsourced to accredited 3rd party service providers. The list of genotyping platforms offered are below. After deciding which service suit your needs best, please scroll below to the Genotyping Services Planner to send a request. The User Guides below can also help with understanding the process flow in sending a request.
Trait-based genotyping - Genotyping with SNP or indel markers for biotic and abiotic stresses, grain quality and yield using Kompetitive Allele Specific PCR (KASP) chemistry
Quality control SNP panels (Global rice QC 24-SNP panel, Indica rice QC 10-SNP panel) - Using the KASP-based chemistry, these markers are useful for seed quality control and assurance such as hybridity (F1) testing and line verification.
1k-RiCA SNP genotyping - This panel, designed to characterize indica germplasm, gives good "cost vs. marker-density" balance for genomic prediction applications in elite material. Other uses include DNA fingerprinting, early QTL mapping studies for specific cross combinations of indica x indica, indica x japonica and indica x aus, and background selection in MAB programs.
7k Infinium SNP genotyping - The 7k "rice SNP chip" has been used in genetic diversity, DNA fingerprinting, QTL mapping and genome-wide association studies
User Guides for non-IRRI Partners (External Requests)
Learn how to schedule a genotyping request, submit samples and more
User Guides for IRRI Partners (Internal Requests)
Learn how to schedule a genotyping request, submit samples and more