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Welcome to Anupam Bandyopadhyay's Page
Education
Ph.D. 2008-2012, IISER-Pune. Academic Advisor: Prof. H. N. Gopi
M.Sc. 2005-2007, Banaras Hindu University
B.Sc. 2001-2004, University of Burdwan
Professional Experience
01/2019-Present: Assistant Professor of IIT-Ropar, Punjab, India
05/2018-12/2018: Postdoc Fellow at NCBS-TIFR, Bangalore, India
06/2016-02/2018: Postdoc Associate at MIT, USA, with Prof. Bradley Pentelute
02/2013-05/2016: Postdoc Research Fellow at Boston College, USA with Prof. Jianmin Gao
07/2007-04/2008: Research Associate at Syngenta Biosciences, Goa
Awards and Honours
Indian Peptide Society, Young Scientist Award - 03/2025
Editorial Board Member of the Journal 'Protein and Peptide Letters' - 07/2020
Ramanujan Fellowship, DST-SERB, India - 08/2018
PostDoc Bridging Fellow, NCBS-TIFR - 05/2018
PostDoc Associate, DARPA-USA - 12/2016
STAR Postdoctoral Fellowship, Novo Nordisk - 06/2016
1st Prize, Young Investigator Award at the Peptide Gordon Conference 2016 - CA, USA
Boston College Postdoc Research Fellowship (NIH-aided) - 02/2013
Senior Research Fellowship, CSIR, India - 2010-2012
Junior Research Fellowship, CSIR, India - 2008-2010
Graduate Aptitude Test in Engineering, India - 2007
Teaching Activities
CY612 - Molecular Recognition
CYL101 - Chemistry for Engineers
CY515 - Bio-organic Chemistry
CYL456 - Chemistry of Life (Summer Course)
CYL230 - Introduction of Bioorganic and Biochemistry
GE101 - Technology Museum Lab (2019 Spring Semester)
CY703 - Supramolecular Chemistry
Invited Talks
250th ACS National Meeting & Exposition 2015
7th Annual Young Investigator Meeting, MIT-Boston 2015 (Selected as a Speaker)
The Dept. of Organic Chemistry, IISc. 2017
Dept. of Chemical Sciences, TIFR-Mumbai, 2017
Dept. of Chemistry, IISER-Pune, 2017
Dept. of Chemistry, IIT-Kanpur, 2017
New Chemistry Unit, JNCASR, Bangalore, 2017
Centre of Bio-Medical Research, Lucknow, 2017
Dept. of Chemistry, IIT-Roorkee, 2017
Dept. of Chemistry, IISER-Bhopal, 2018
Dept. of Chemistry, IISER-Mohali, 2018
Dept. of Chemistry, IISER-Tirupati, 2018
Dept. of Chemistry, UNIST-South Korea, 2018
DST SERB School in Chemical Ecology at IISc, India 2018. Invited Lecture Class: Separation Technique and Mass Spec Analysis of Biomolecules
Dept. of Chemistry, IIT-Ropar, 2018
Dept. of Chemistry, Punjab Univ., 10/2019 Invited Speaker in “Peptide and Nanotechnological Approaches for Novel Theranostics” SPARC Program
Dept. of Chemistry, Punjab Univ., 10/2019 “Chemistry of Peptides and Proteins” Invited Speaker in SPARC Program
DAV College, Jalandhar, 03/2020 Invited Speaker in National Conference ‘Science & Technology for a Sustainable Future’
Invited Speaker on CRIKC RABMC 11/2022, "Rapid and Highly Efficient Assembly of a Disulfide Bond in Solid Phase Peptide Macrocyclization"
Invited Speaker on Society for Promotion of Science & Technology in India (SPSTI), "Joining Two Molecules Orthogonally by a Click" (5th Lecture Series on Nobel Prize in Chemistry - 2022)
Invited Speaker on DST 4th SERB School in Chemical Ecology at IISc, August 2023
Invited Speaker on ChemSymphoria 2023, IISER Pune
Invited Speaker on Seminar, Department of Physics, Shiv Nadar University, 2024, 21 August 2024, "Firstborn Peptide Macrocycle Frameworks Adjoining Boronoheterocycle: Synthesis, Structure, and Delivery
Publication Before Joining IIT Ropar
Post Doc:
With Prof. Bradley L. Pentelute, Massachusetts Institute of Technology, USA
25. In-solution enrichment identifies peptide inhibitors of protein–protein interactions. Touti, F., Gates, Z. P., Bandyopadhyay, A., Lautrette, G., Pentelute, B. L., Nature Chemical Biology, 2019, 15, 410-418.
24. ‘Xenoprotein’ engineering via synthetic libraries. Gates, Z. P., Vinogradov, A. A., Quartararo, A. J., Bandyopadhyay, A., Choo, Z. N., Evans, E. D. Halloran, K. H., Mijalis, A. J., Mong, S. K., Simon, M. D., Standley, E., Styduhar, E., Tasker, S., Touti, F., Weber, J., Wilson, J., Jamison, T. F., Pentelute, B. L., Proc. Natl. Acad. Sci. USA, 2018, 115, E5298-E5306.
(Highlighted in C&EN, MIT news.)
With Prof. Jianmin Gao, Boston College, USA
23. Fluorogenic Diazaborine Formation of Semicarbazide with Designed Coumarin Derivatives, Cambray, S., Bandyopadhyay, A.*, Gao, J., Chem. Commun. 2017, 53, 12532-12535. * = Corresponding author.
22. Fast Diazaborine Formation of Semicarbazide Enables Facile Labeling of Bacterial Pathogens, Bandyopadhyay, A., Cambray, S., Gao, J., J. Am. Chem. Soc. 2017, 139, 871-878.
21. Radiolabeled Targeted peptides for Imaging Infection in Mice Models, Aweda T, Bandyopadhyay, A., Gao, J., Lapi, S, J.Nucl. Med., 2016, 57, 1132-1132.
20. Targeting Biomolecules with Reversible Covalent Chemistry, Bandyopadhyay, A., Gao, J., Curr. Opin. Chem. Biol., 2016, 34, 110-116.
19. Fast and selective labelling of N-terminal cysteines at neutral pH via thiazolidino boronate formation, Bandyopadhyay, A., Cambray, S., Gao, J, Chem. Sci., 2016, 7, 4589-4593.
18. Iminoboronate-based peptide cyclization that responds to pH, oxidation, and small molecule modulators, Bandyopadhyay, A., Gao, J., J. Am. Chem. Soc., 2016, 138, 2098-2101.
17. Iminoboronate Formation Leads to Fast and Reversible Conjugation Chemistry of α-Nucleophiles at Neutral pH, Bandyopadhyay, A., Gao, J., Chem. Eur. J., 2015, 21, 14748-14752.
16. Targeting Bacteria via Iminoboronate Chemistry of Amine-Presenting Lipids, Bandyopadhyay, A., MaCarthy, K., Kelly, M., Gao, J., Nature Communications, 2015, 6:6561.
Highlighted in EurekAlert! (The Global Source for Science News), phys.org., Boston College News, ScienceDaily, HealthNews&Information, ScienceNewsline
15. The Association of the Vanin-1 N131S Variant with Blood Pressure is Mediated by Endoplasmic-Reticulum-Associated Degradation and Loss of Function, Wang, Ya-J., Tayo, B. O., Bandyopadhyay, A., Wang, H., Feng,T., Franceschini, N., Tang, H., Gao, J., Sung, Y. J., Elston, R. C., Williams, S. M., Cooper, R. S., Mu, T-W., Zhu, X., PLOS Genetics, 2014, 10, e1004641.
14. Radiolabeled Cationic Peptides for Targeted Imaging of Infection, Aweda, T., Muftuler, Z., Massicano, A., Gadhia, D., Queern, S., McCarthy, K., Bandyopadhyay, A., Gao, J., Lapi, S, Contrast Media & Molecular Imaging, 2019.
13. "Cancer-targeting peptides" Book Chapter 5 in Advances in the discovery and development of peptide therapeutics (Eds.: Kruger G. and Albericio F.), Bandyopadhyay, A., Gao, J., Future Science Ltd., 2015.
Ph.D.:
12. Helices with Additional H-bonds: Crystallographic Conformations of α,γ-Hybrid Peptides Helices Composed of β-Hydroxy β-Amino acids (Statines), Malik, A., Kumar, M. G., Bandyopadhyay, A., Gopi, H. N., Biopolymers (Peptide Science)., 2017, 108, e22978.
11. Structural Features and Molecular Aggregations of Designed Triple-Stranded β-Sheets in Single Crystals, Bandyopadhyay, A., Mishra, R., Gopi, H. N., Chem. Commun., 2016, 52, 4938-4941.
10. Exploring β-Hydroxy γ-Amino Acids (Statines) in the Design of Hybrid Peptide Foldamers, Bandyopadhyay, A., Malik, A., Kumar, M. G., Gopi, H. N., Org. Lett., 2014, 16, 294-297.
9. Protein secondary structure mimetics: Crystal conformations of α/γ4-hybrid peptide 12-helices with proteinogenic side chains and their analogy with α-and β-peptide helices, Jadhav, S. J.; Bandyopadhyay, A.; Gopi, H. N., Org. Biomol. Chem., 2013, 11, 509-514.
8. Thiazole-Carbonyl Interactions: A Case Study Using Phenylalanine Thiazole Cyclic Tripeptides, Mali, S. M.; Schneider, T. F.; Bandyopadhyay, A.; Jadhav, S. J.; Werz, D. B.; Gopi, H. N., Cryst. Growth Des. 2012, 12, 5643-5648.
7. α/γ4-Hybrid peptide helices: synthesis, crystal conformations and analogy with the α-helix, Bandyopadhyay, A., Jadhav, S. V. and Gopi, H. N., Chem. Commun., 2012, 48, 7170-7172.
6. Hybrid Peptides: Direct Transformation of α/α, β-Unsaturated γ-Hybrid Peptides to α/γ-Hybrid Peptide 12-Helices, Bandyopadhyay, A. and Gopi, H. N., Org. Lett., 2012, 14, 2270-2273.
5. A facile transformation of amino acids to functionalized coumarins, Bandyopadhyay, A. and Gopi, H. N., Org. Biomol. Chem., 2011, 9, 8089-8095.
4. Synthesis of α, β-unsaturated γ-amino esters with unprecedented high (E)-stereoselectivity and their conformational analysis in peptides, Mali, S. M., Bandyopadhyay, A., Jadhav, S. V., Kumar, M. G., Gopi, H. N., Org. Biomol. Chem., 2011, 9, 6566-6574.
3. Synthesis and structural investigations of functionalizable hybrid β-hairpin, Bandyopadhyay, A., Mali, S.M., Lunawat, P., Raja, K. M., Gopi, H. N., Org. Lett., 2011, 13, 4482-4485.
2. A facile synthesis and crystallographic analysis of N-protected α-amino alcohols and short peptaibols, Jadhav, S. V., Bandyopadhyay, A., Benke, S. N, Mali, S. M. and Gopi, H. N., Org. Biomol. Chem., 2011, 9, 4182-4187.
1. Tin(II) chloride assisted synthesis of N-protected γ-amino β-keto esters through semipinacol rearrangement, Bandyopadhyay, A., Agrawal, N., Mali, S. M., Jadhav, S. V. and Gopi, H. N., Org. Biomol. Chem., 2010, 8, 4855-4860.
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