Our group majorly focuses on design, modification and implementation of solution and solid state NMR pulse sequences to unveil molecular interaction and dynamics relevant in the field of materials, medicine and environment to name a few. Additionally, the group is also interested in MR methods based on solid state NQR and solution state Overhauser Dynamic Nuclear Polarization (ODNP). The group further uses various spectroscopic techniques to shed light in the cross-disciplinary areas of renewable energy sources, biomacromolecules and biomaterials. The lab is continuously expanding its research areas by collaborating with several academic and research Institutes of National repute.
Solution state NMR methods based on relaxation and magnetization transfer allow determination of molecular correlation time and internuclear interactions. Molecular correlation time provides an idea of the motional regime accessed by the molecule that largely depends on its molecular weight. Hence, it provides a fair means to probe molecular association or aggregation in solution. Further, relaxation measurements unravel exchange of a molecule within different molecular environments highlighting conformational changes and/or complexation. NMR relaxation, diffusion and magnetization transfer based methods thus serve as indispensable tools to understand molecular interaction, association and dynamics relevant in the fields of Chemistry, Biology, Medicine, Agriculture and many other interdisciplinary areas.
This project aims to evaluate molecular interaction and dynamics of probe liquid /guest species in cyclodextrin-based nanosponge (β-CDNS). β-CDNS exhibits a porous architecture and finds potential use in drug delivery and molecular encapsulation. Established synthetic methods reported in the literature are to be followed to synthesize a set of CDNS. These porous materials will be characterized in terms of various pore parameters, guest encapsulation, retention, and release mechanisms. A set of advanced NMR experiments based on NMR diffusion, relaxation, and correlation is to be carried out to achieve the said objectives. 1H Pulsed field Gradient NMR diffusion analysis of probe liquid/guest molecules will be implemented at high field NMR. Restricted diffusion measurements of the probe liquid at short and long diffusion times allow the extraction of surface/volume and tortuosity. NMR cryoporometry measurements at low field over a series of low temperatures will be used to estimate pore size distribution. These measurements exploit the Gibbs-Thompson effect on transverse relaxation rates of the probe liquid. Spin-lattice relaxation rate measurements employing selective and non-selective inversion recovery experiments at high field will be employed to quantify guest encapsulation and exchange dynamics. Besides organic guest molecules, heavy metal ions adsorption by CDNS will be attempted using paramagnetic relaxation enhancement of the solvent molecules. Finally, ultrafast diffusion, diffusion-exchange, and diffusion-relaxation correlation experiments will be implemented to evaluate guest retention time and release kinetics.
The primary focus of the current proposal is to implement advanced solid-state NMR methods to investigate the structure-performance relationship of a set of synthesized nanostructured multi-metal lithium and sodium ion battery materials, with the aim of understanding the effects of lithiation/delithiation and sodiation/desodiation on conductivity and ion transport. In recent years number of international research groups have demonstrated the unique power of solid-state magnetic resonance-based methods in evaluating battery materials. A set of one (1D) and two (2D) dimensional Magic Angle Spinning solid state NMR methods are appropriate to decipher ion transport dynamics, identify possible ion transport sites and detect structural evolution of the battery materials due to charge/discharge cycle by monitoring the NMR active charge carriers namely 6,7Li and 23Na and various skeletal nuclei such as 17O, 19F, 31P, 33S, 39K, 59Co and many more. The main focus of the present proposal is to quantify the ion transport dynamics and assess the effect of metalation/demetalation on the dynamics.
Project 3: Integrating High- and Low-Field solution state NMR to Probe Molecular Recognition: From Protein–Ligand Dynamics to Humic Acid–Metal ion Interactions.
This project aims to study molecular recognition events in both biological and environmental systems by combining high-field and low-field NMR methods. At the biomolecular level, solution-state 19F NMR is applied to investigate protein–ligand binding processes using techniques such as Carr–Purcell–Meiboom–Gill (CPMG), relaxation dispersion (RD-CPMG), and saturation transfer difference (STD-NMR). The high sensitivity and wide chemical shift range of fluorine nuclei make them excellent probes for monitoring ligand binding, conformational changes, and exchange dynamics. Through these experiments, dissociation constants, number of binding sites, and exchange rates are determined, providing a detailed picture of molecular recognition at atomic resolution. Other than these studies, low-field NMR (LF-NMR) cryoporometry and relaxation analysis were employed to investigate the binding interactions of heavy toxic metal ions, such as Manganese - Mn(II), with humic acids (HAs). Paramagnetic relaxation enhancement (PRE) measurements reveal how metal ions alter water proton relaxation, offering insight into binding affinities with HAs. In addition, NMR cryoporometry is used to determine the porous architecture of humic acids, based on the melting point depression of confined liquids. These measurements are particularly relevant for understanding how humic acids interact and immobilize environmentally significant metal ions like chromium and manganese under varying pH conditions.
Solution state Nuclear Magnetic Resonance (NMR) spectroscopy have been extensively used for the purpose of confirming encapsulation, structural details and stability of inclusion complexes of small drug molecules and supramolecular DDS. Similarly polymeric microspheres are also explored for drug encapsulation and consequently have been analysed by NMR in solution state providing knowledge about encapsulation efficiency, release kinetics and stability of encapsulated drugs. In this project, our main objective is to employ 1D selective NMR relaxation methods for analyzing motional dynamics of β-cyclodextrin (β-CD) encapsulated drug molecules. Further, NMR exchange experiments in one dimensional mode has been employed to understand effect of encapsulation on the proton dynamics of uracil molecule in case of polymeric microspheres.
The group is currently investing time in analysing various drug delivery systems ranging from supramolecular to polymeric to metal oxide nanomaterials in terms of drug encapsulation, release mechanism and stability.
Analysis and quantification of ligand-protein interaction draws major attention in the field of biomedicine, agrochemicals, pharmaceuticals etc. In the recent past solution state Nuclear Magnetic Resonance (NMR) has emerged as one of the most powerful method for understanding the impact of various small to intermediate sized ligands on protein structure and function. The project aims to investigate ligand-protein interactions using solution-state multinuclear 1D Nuclear Magnetic Resonance (NMR) spectroscopy as a major technique complemented by fluorescence quenching studies, molecular docking, and Isothermal Titration Calorimetry (ITC), whenever required. The following figures represent the graphical illustration of the objectives. Two different problems are being addressed under this umbrella. Organophosphate-protein interaction using 1H NMR and organofluorine-protein interaction employing 19F NMR methods.
The project aims to extract humic substances following IHSS methods from various soil samples collected from different parts of western Rajastha. Further, agrochemicals especially organic pollutants are chosen to study the interaction of HS with these molecules. Small molecule-Humic acid interactions are mainly analysed by employing multinuclear NMR methods based on relaxation, diffusion and Saturation Transfer Difference. The project further aims to design HS based biosensors for environmental pollution remediation processes. A set of sequestration experiments are designed based on electrochemical methods in collaboration with Dr. Ritu's group.
In this project we aim to understand molecular association and/or higher order structure formation under the influence of co-solute interaction in solution. NMR relaxation at high and low field in conjunction with Dynamic Nuclear Polarization has been employed to address to problems of interest: Self association of amino acids in presence of salts and structural transition of peptides in presence of fluoroalcohols.
Project 1: Solid state Nuclear Magnetic Resonance (NMR) assessment of zinc oxide (ZnO) nanomaterial based drug delivery systems (Funded by DST, SERB under EMR scheme, Co-PI: Dr. Ambesh Dixit)
The project aims to apply various one and two dimensional solid state NMR experiments to characterize molecular interaction of bare and surface functionalized ZnO nanomaterials with a few anticancer drugs and amino acids. Established literature methods are used to synthesize ZnO nanoparticle and nanorods along with drug loading and adsorption of amino acids. Multinuclear solid state NMR experiments are used to understand drug dynamics and mechanism of adsorption. In the project a set of ZnO nanomaterials have been synthesized and characterized following established literature methods. Further, the materials are used for surface functionalization with small anti-cancer drug and amino acid. Solid state CPMAS NMR experiments are carried out to analyse the effect of surface adsorption on the small drug molecules. A series of solid state relaxation measurements are also undertaken to understand the modification in dynamic regime due to adsorption.
As Principal Investigator:
"NMR diffusometry and relaxometry approaches to evaluate molecular interaction and dynamics in nanosponges" (Funding agency: SERB, Status: Completed)
"Ion transport dynamics in nanostructured cathode materials for Lithium and Sodium battery materials: Application of solid state MAS NMR and electrochemical methods" (Funding Agency: MoE STAR, Status: Ongoing)
"Solid State Nuclear Magnetic Resonance assessment of zinc oxide nanomaterial based drug delivery systems" (Funding Agency: SERB, Status: Completed)
"Ligand Based 19F NMR methods with selective pulses to probe small molecule protein Interaction" (Funding Agency: IIT Jodhpur, Status: Completed)
Encapsulation of small drug molecules with cyclodextrin cavity - DFT analysis
Solution state and solid state NMR analysis of membrane (completed)
Ligand-protein interaction analysis with ITC and monitoring amino acid self-association in solution
Sperm Motility in biotin enriched medium (completed)
Application of Overhauser Dynamic Nuclear Polarization in solution at low magnetic field enabling understanding of molecular mobility
Design of ZnO nanomaterial based drug delivery systems