Publications
Chaudhari R, Dasgupta M, Nigam D and Kodgire P* Engineering Outer Membrane Vesicles (OMVs) carrying OmpA from S. Typhimurium for targeted modulation of human B-cell function through AID expression and class switch recombination. Microb. Pathog., 2025, 107918 (In Press).
Chaudhari R, Dasgupta M and Kodgire P* Unraveling the impact of Outer Membrane Protein, OmpA, from S. Typhimurium on aberrant AID expression and IgM to IgA class switching in human B-cells. Immunology, 2025, 175(3):359-372.
Jaiswal S, Dhingra I, Joshi A* and Kodgire P*. Efficacious bioremediation of pesticide-contaminated water using immobilized organophosphorus acid anhydrolase–FL variant (OPAA-FL) enzyme in a lab-scale bioreactor. J. Water Process Eng., 2025, 71, 107357.
Singh B and Kodgire P*. Refolding Dynamics and Immunoinformatic Insights into Vibrio cholerae OmpA, OmpK, and OmpV for Vaccine Applications. Int. J. Biol. Macromol., 2024, 283(Pt 2):137643.
Jaiswal S, Singh V, Jain M, Ahmed J, Joshi A* and Kodgire P*. Dual colorimetric and fluorometric biosensing assays for organophosphate pesticide detection using monomeric Teal Fluorescent Protein (mTFP1)-Organophosphate degrading enzyme fusion proteins expressed in E. coli. ACS ES&T Water, 2024, 252(Pt 2):118888.
Sharma S, Dasgupta M, Vadaga BS, Kodgire P*. Unfolding the Symbiosis of AID, Chromatin Remodelers, and Epigenetics - The ACE Phenomenon of Antibody Diversity. Immunol. Lett., 2024, 269:106909.
Jaiswal S, Singh B, Dhingra I, Joshi A* and Kodgire P* Bioremediation and Bioscavenging for elimination of Organophosphate threats: An approach using enzymatic advancements. Environ. Res., 2024, 252(Pt 2):118888.
Vikhrankar S, Satbhai S, Kulkarni P, Ranbhor R, Ramakrishnan V and Kodgire P Enzymatic Routes for Chiral Amine Synthesis: Protein Engineering and Process Optimization. Biologics: Targets and Therapy., 2024, 18:165-179.
Malik K and Kodgire P* Insights into the molecular mechanisms of H. pylori-associated B-cell Lymphoma. Crit. Rev. Microbiol., 2024, 1–17.
Jaiswal A, Roy R, Tamrakar A, Singh AK, Kar P and Kodgire P* Activation-induced cytidine deaminase an antibody diversification enzyme interacts with chromatin modifier UBN1 in B-cells. Sci. Rep. 2023, 13(1):19615.
Vyas T, Jaiswal S, Choudhary S, Kodgire P* and Joshi AB*, Recombinant Organophosphorus acid anhydrolase (OPAA) enzyme-carbon quantum dot (CQDs)-immobilized thin film biosensors for the specific detection of Ethyl Paraoxon and Methyl Parathion in water resources, Environ. Res., 2023, 243:117855.
Singh B, Jaiswal S and Kodgire P*. Outer membrane proteins and vesicles as promising vaccine candidates against Vibrio spp. infections. Crit. Rev. Microbiol., 2023, 5:1-17.
Jaiswal A, Jain M, Singh K and Kodgire P*. Heterologous expression of hAID in E. coli leads to the production of a splice isoform of AID: hAIDδC, a mystery to be explored. Protein Expr Purif., 2022, 199:106149.
Chaudhari R, Singh K and Kodgire P*. Biochemical and Molecular Mechanisms of Antibiotic Resistance in Salmonella spp. Res. Microbiol., 2022, 103985.
Sarkar S, Gogoi M, Mahato M, Joshi AB, Baruah AJ, Kodgire P and Boruah P. Biosensors for detection of prostate cancer: a review. Biomed Microdevices. 2022, 24(4):32.
Tamrakar A and Kodgire P*. HomA and HomB, outer membrane proteins of Helicobacter pylori down-regulate activation-induced cytidine deaminase (AID) and Ig switch germline transcription and thereby affect class switch recombination (CSR) of Ig genes in human B-cells. Mol. Immunol., 2022, 142: 37-49.
Vyas T, Singh V, Kodgire P* and Joshi A*, Insights in detection and analysis of organophosphates using Organophosphorus acid Anhydrolases (OPAA) enzyme-based biosensors, Crit. Rev. Biotechnol., 2022, 3:1-19.
Tamrakar A, Singh R, Kumar A, Makde DR, Ashish and Kodgire P*. Biophysical characterization of the homodimers of HomA and HomB, outer membrane proteins of Helicobacter pylori. Sci. Rep. 2021, 11(1):24471.
Jain M, Yadav P, Joshi B, Joshi A and Kodgire P*., Recombinant organophosphorus hydrolase (OPH) expression in E. coli for the effective detection of organophosphate pesticides, Protein Expr Purif. 2021, 186:105929.
Jain M, Yadav P, Joshi B, Joshi A* and Kodgire P*. A novel biosensor for the detection of organophosphorus (OP)-based pesticides using organophosphorus acid anhydrolase (OPAA)-FL variant, Appl. Microbiol. Biotechnol. 2021, 105(1):389-400
Singh AK, Tamrakar A, Jaiswal A, Kanayama N and Kodgire P*, SRSF1-3, a splicing and somatic hypermutation regulator, controls transcription of IgV genes via chromatin regulators SATB2, UBN1 and histone variant H3.3, Mol. Immunol., 2020, 119: 69-82.
Jaiswal A, Singh AK, Tamrakar A and Kodgire P*, Unfolding the Role of Splicing Factors and RNA Debranching in AID Mediated Antibody Diversification, Int. Rev. Immunol. 2021, 40(4):289-306.
Jain N, Mishra SK, Shankar U, Jaiswal A, Sharma TK, Kodgire P and Kumar A., G-quadruplex stabilization in the ions and maltose transporters gene inhibit Salmonella enterica growth and virulence, Genomics, 2020, 112(6): 4863–4874.
Shankar U, Jain N, Majee P, Kodgire P, Sharma TK and Kumar A, Exploring Computational and Biophysical Tools to Study the Presence of G-Quadruplex Structures: A Promising Therapeutic Solution for Drug-Resistant Vibrio cholerae, Front. Genet. 2020, 11:935.
Singh AK, Tamrakar A, Jaiswal A, Kanayama N, Agarwal A, Tripathi P and Kodgire P*, Splicing regulator SRSF1-3 that controls somatic hypermutation of IgV genes interacts with topoisomerase 1 and AID, Mol. Immunol. 2019, 116:63-72.
Singh AK, Jaiswal A and Kodgire P*, AID preferentially targets the top strand in nucleosome sequences, Mol. Immunol. 2019, 112:198-205.
Jain M, Yadav P, Joshi A and Kodgire P*, Advances in detection of hazardous organophosphorus compounds using organophosphorus hydrolase based biosensors, Crit. Rev. Toxicol. 2019, 49(5):387-410.
Choudhary M, Tamrakar A, Singh AK, Jain M, Jaiswal A and Kodgire P*, AID Biology: A Pathological and Clinical Perspective, Int. Rev. Immunol., 2018, 37(1): 37-56.
Bhattacharya A, Bhowmik S, Singh AK, Kodgire P, Das A and Mukherjee T, Direct Evidence of Intrinsic Blue Fluorescence from Oligomeric Interfaces of Human Serum Albumin, Langmuir, 2017, 33(40): 10606-15.
Tamrakar A, Singh AK, Chaudhary M, and Kodgire P*. Fighting with Gram-negative Enemy: Can Outer Membrane Proteins Aid in the Rescue?, Chem. Biol. Lett., 2017, 4(1): 9-19. [in Special Issue - Diagnosis and Therapy of Infectious Diseases].
Kodgire P, Mukkawar P, Ratnam S, Martin TE and Storb U. Changes in RNA polymerase II progression influence somatic hypermutation of Ig-related genes by AID, J. Exp. Med., 2013, 210(7): 1481-92.
Kodgire P, Mukkawar P, North JA, Poirier MG and Storb U. Nucleosome stability dramatically impacts the targeting of somatic hypermutations, Mol. Cell. Biol. 2012 32(10): 2030-2040.
Tanaka A, Shen HM, Ratnam S, Kodgire P and Storb U. Attracting AID to targets of somatic hypermutation, J. Exp. Med. 2010, 207(2): 405-415.
Kodgire P and Rao KK. ScoC regulates hag expression at multiple points in Bacillus subtilis. Microbiology, 2009, 155: 142-149.
Kodgire P, Dixit M and Rao KK. ScoC and SinR negatively regulate epr by corepression in Bacillus subtilis. J. Bacteriol., 2006, 188: 6425-6428.
Kodgire P and Rao KK. A dual mode of regulation of flgM by ScoC in Bacillus subtilis. Can. J. Microbiol., 2009, 55: 983–989.
Murudkar CS, Kodgire P and Rao KK. The carboxy terminal domain of Epr, a minor extracellular serine protease, is essential for the swarming motility of Bacillus subtilis 168. FEMS Microbiol. Lett., 2006, 257: 24-31.
Kar S, Pradhan B, Sinha RK, Kundu T, Kodgire P, Rao KK, Puranik VG and Lahiri GK. Synthesis, structure, redox, NLO and DNA interaction aspects of [{(L'-'")2RuII}3(m3-L)]3+ and [(L')2RuII(NC5H4S-)]+[L3- = 1,3,5-triazine-2,4,6-trithiolato, L'-'" = arylazopyridine] Dalton Trans., (Royal Society of Chemistry Publication), 2004, 1752–1760.