Publications

V. Gonzalez-Huici, B. Szakal, M. Urulangodi, I. Psakhye, F. Castellucci, D. Menolfi, E. Rajakumara, M. Fumasoni, R. Bermejo, S. Jentsch, D. Branzei, EMBO J, DNA bending facilitates the error-free DNA damage tolerance pathway and upholds genome integrity, 33(4), 327-40 (2014).

G. Shivange, N. Kodipelli, M. Monisha, R. Anindya, ‘A Role for Saccharomyces cerevisiae Tpa1 Protein in Direct Alkylation Repair’, Journal of Biological Chemistry., 289(52):35939-52, 2014.

T. Rathinavelan, M. Lara-Tejero, M. Lefebre, S. Chatterjee, A.C. McShan, D.C. Guo, C. Tang, J.E. Galan and R.N. De Guzman, ‘NMR model of PrgI-SipD interaction and its implications in the needle-tip assembly of the Salmonella type III secretion system’, J. Mol. Biol., 426, 2958-2969, 2014.

K.W. Schicker, E. Novikova, B. Pohn, T. Stockner, C. Kugler, A. Singh, C. Zeitz, M.E. Lancelot, I. Audo, B.P. Leroy, M. Freissmuth, S. Herzig, J. Matthes and A. Koschak, ‘Spectrum of Cav1.4 dysfunction in congenital stationary night blindness type 2. V. Burtscher’, Biochim Biophys Acta. Aug: 1883 (8):2053-65, 2014.

G. Shivange, N. Kodipelli R. Anindya, ‘A nonradioactive restriction enzyme mediated assay to detect DNA repair dioxygenase’, Anal Biochem., 465C:35- 37, 2014.

T. Hong, H. Yang, S.S. Zhang, H.C. Cho, M. Kalashnikova, B. Sun, H. Zhang, A. Bhargava, M. Grabe, J. Olgin, J. Gorelik, E. Marban, L.Y. Jan, and R. M. Shaw, ‘Cardiac BIN1 folds T-tubule membrane, controlling ion flux and limiting arrhythmia’, Nat Med. Jun; 20 (6):624-32, 2014.

S. Agarwal, P Mishra, G Shivange, N Kodipelli, M Moros M, JM de la Fuente, R Anindya, ‘Citrate-capped gold nanoparticles for the label-free detection of ubiquitin C-terminal hydrolase-1’, Analyst., 140: 1166-73, 2015.

T. Rathinavelan, M. Lara-Tejero, M. Lefebre, S. Chatterjee, A.C. McShan, D.C. Guo, C. Tang, J.E. Galan and R.N. De Guzman, ‘NMR model of PrgI-SipD interaction and its implications in the needle-tip assembly of the Salmonella type III secretion system’, J. Mol. Biol., 426, 2958-2969, 2014.

N. Khan, N. Kolimi, T. Rathinavelan, ‘Twisting right to left: A…A mismatch in a CAG trinucleotide repeat overexpansion provokes left-handed Z-DNA conformation’, PLoS Comput Biol., 11, e1004162, 2015.

Devi, S., Rajakumara, E., Ahmed N. Induction of Mincle by Helicobacter pylori and consequent anti-inflammatory signaling denote a bacterial survival strategy. Nature Scientific Reports. 2015 Oct 12;5:15049. doi: 10.1038/srep15049.

Glukhov AV, Balycheva M, Sanchez- Alonso JL, Ilkan Z, Alvarez-Laviada A, Bhogal N, Diakonov I, Schobesberger S, Sikkel MB, Bhargava A, Faggian G, Punjabi PP, Houser SR, Gorelik, Direct Evidence for Microdomain-Specific Localization and Remodeling of Functional L-Type Calcium Channels in Rat and Human Atrial Myocytes, J. Circulation. 5 Dec 22;132(25):2372-84. (2015)

Glukhov AV, Rosenshtraukh LV, Bhargava A, Miragoli M, Boukens BJ, Atrial Fibrillation: Biophysics, Molecular Mechanisms and Novel Therapies, Editorial. Biomed Res Int. 2015:780671. (2015)

A. Prasad, G. Raju, V. Sivalingam, A. Girdhar, M. Verma, A. Vats, V. Taneja, Ganesan Prabusankar, and Basant K. Patel, An acridine derivative, [4,5-bis{(N-carboxy methyl imidazolium) methyl}acridine] dibromide, shows anti-TDP-43 aggregation effect in ALS disease models, Scientific Reports,6, 39490 (2016).

G. Goldsmith, T. Rathinavelan, and N. Yathindra, Selective Preference of Parallel DNA Triplexes is Due to the Disruption of Hoogsteen Hydrogen Bonds Caused by the Severe Nonisostericity Between the G*GC and T*AT triplets, PLoS One, 11(3), e0152102 (2016).

V. Sivalingam, N.L. Prasanna, N. Sharma, A. Prasad, and Basant K. Patel, Wild-type hen egg white lysozyme aggregation in vitro can form selfseeding amyloid conformational variants, Biophys Chem., 219, 28-37 (2016).

V. Bharathi, A. Girdhar, A. Prasad, M. Verma, V. Taneja, and Basant K. Patel, Use of ade1 and ade2 mutations for development of a versatile red/white colour assay of amyloid-induced oxidative stress in Saccharomyces cerevisiae, Yeast., 33(12), 607-620 (2016).

V. Sivalingam and Basant K. Patel, Familial mutations in fibrinogen A-alpha (FGA) chain identified in renal amyloidosis increase in vitro amyloidogenicity of FGA fragment, Biochimie, 127, 44-49 (2016).

N. Sharma, V. Sivalingam, and Basant K. Patel, Recombinant Human Semenogelin-1 (Sg1) and Sg1 (1-159) form Detergent Stable Amyloid like Aggregates in vitro, Protein & Peptide letters, 23(1), 87-96 (2016).

G. Raju, V. Sivalingam, Archana, Basant K. Patel and Ganesan Prabusankar, Imidazolium Tagged Acridine Derivatives: Syntheses, Structures, DNA Sensing and Anti-microbial Activities, Journal of Molecular Structure, 1107, 291-299 (2016).

G. Shivange, M. Monisha, R. Nigam, N. Kodipelli, R. Anindya, RecA stimulates AlkB-mediated direct repair of DNA adducts, Nucleic Acid Research, 44, 8754-63 (2016).

S. Sachdeva, N. Kolimi, S.A. Nair, and T. Rathinavelan, Key Diffusion Mechanisms Involved in Water Conduction of Wzi, Sci. Rep., 28157, (2016) 10.1038/srep28157.

A.Bhargava, T. O’Hara, A.V. Glukhov, S. Schobesberger, N. Bhogal, M.B. Sikkel, C. Mansfield, Y.E. Korchev, A.R. Lyon, P.P. Punjabi, V.O. Nikolaev, N.A. Trayanova, and Gorelik, Microdomain-Specific Modulation of L-Type Calcium Channels Leads to Triggered Ventricular Arrhythmia in Heart Failure, JL Sanchez-Alonso, J.Circ Res. Sep 30;119(8), 944- 55 (2016).

S. Nema, W. Hasan, A. Bhargava, and Y. Bhargava, A novel method for automated tracking and quantification of adult zebrafish behaviour during anxiety, J Neurosci Methods, Sep 15; 271, 65-75 (2016).

Rajakumara, E#., Nakarakanti, N.K, Nivya, M.A. and Satish, M. Mechanistic insights into the recognition of 5-methylcytosine oxidation derivatives by the SUVH5 SRA domain. Nature Scientific Reports. 2016 Feb 4;6:20161. doi: 10.1038/srep20161. (# Corresponding author)

R. Anindya, Non-hemedioxygenases in tumor hypoxia: they’re all bound with the same fate, DNA Repair, 49, 21-25 (2017).

S. Sachdeva, R. V. Palur, K. U. Sudhakar, and T. Rathinavelan, E. coli group I capsular polysaccharide exportation nanomachinary as a plausible antivirulent target in the perspective of emerging antimicrobial resistance, Frontiers in Microbiology, 8-70 (2017) 10.3389/fmicb.2017.00070.

Patro, L.P.P., Kumar, A.*, Kolimi, N.* and Rathinavelan, T. (2017), “3D-NuS: A Web Server for Automated Modeling and Visualization of non-canonical 3-Dimensional Nucleic Acid Structures”. J. Mol. Biol. 429, 2438-2448.

Kolimi, N.*, Ajjugal. Y* and Rathinavelan, T. (2017), “A B–Z junction induced by an A...A mismatch in GAC repeats in the gene for cartilage oligomeric matrix protein promotes binding with the hZaADAR1 protein”. Accepted in J. Biol. Chem. 10.1074/jbc.M117.796235

Satish, M., Nivya, MA., Abhishek, S., Nakarakanti, NK., Shivani, D., M. Vani, V., Rajakumara, E. Computational characterization of substrate and product specificities, and functionality of SAM binding pocket in histone lysine methyltransferases from Arabidopsis, rice and maize. Proteins: Structure, Function, and Bioinformatics. 2018 Jan;86(1):21-34. doi: 10.1002/prot.25399.