Publications

    F.A. Khan, S. Ahmad, N. Kodipelli, G. Shivange, R. Anindya*, Syntheses of a library of molecules on the marine natural product ianthelliformisamines platform and their biological evaluation, Org Biomol Chem 12(23) (2014) 3847-65.

   G. Shivange, N. Kodipelli, R. Anindya*, A nonradioactive restriction enzyme-mediated assay to detect DNA repair by Fe(II)/2-oxoglutarate-dependent dioxygenase, Anal Biochem 465 (2014) 35-7.

   G. Shivange, N. Kodipelli, M. Monisha, R. Anindya*, A role for Saccharomyces cerevisiae Tpa1 protein in direct alkylation repair, J Biol Chem 289(52) (2014) 35939-52.

  S. Agarwal, P. Mishra, G. Shivange, N. Kodipelli, M. Moros, J.M. de la Fuente, R. Anindya*, Citrate-capped gold nanoparticles for the label-free detection of ubiquitin C-terminal hydrolase-1, Analyst 140(4) (2015) 1166-73.

 G. Shivange, N. Kodipelli, R. Anindya*, 2-Hydrazinobenzothiazole-based etheno-adduct repair protocol (HERP): a method for quantitative determination of direct repair of etheno-bases, DNA Repair (Amst) 28 (2015) 8-13.

  V. Singh, M. Monisha, R. Anindya, P. Das, Self assembled nanocages from DNA–protoporphyrin hybrid molecules, RSC Advance 5(108) (2015) 89025-89029.

    R. Kumari, S. Singh, M. Monisha, S. Bhowmick, R. Anindya, N. Das, P. Das, Hierarchical coassembly of DNA-triptycene hybrid molecular building blocks and zinc protoporphyrin IX, Beilstein J Nanotechnol 7 (2016) 697-707.

  G. Shivange, M. Monisha, R. Nigam, N. Kodipelli, R. Anindya*, RecA stimulates AlkB-mediated direct repair of DNA adducts, Nucleic Acids Res 44(18) (2016) 8754-8763.

   R. Anindya*, Non-heme dioxygenases in tumor hypoxia: They're all bound with the same fate, DNA Repair (Amst) 49 (2017) 21-25.

 M. Sharma, S.C. Vedithi, M. Das, Anindya R, M. Ebenezer, Sequence homology and expression profile of genes associated with DNA repair pathways in Mycobacterium leprae, Int J Mycobacteriol 6(4) (2017) 365-378.

  Anindya Roy, Gyaninder Pal Singh, Richa Nigam, Gaurav S. Tomar. “Composition, method and kit for rapid risk stratification of traumatic brain injury.” (Patent: PCT/201741042270).

  A. Deepa, K. Naveena, R. Anindya*, DNA repair activity of Fe(II)/2OG-dependent dioxygenases affected by low iron level in Saccharomyces cerevisiae, FEMS Yeast Res 18(2) (2018).

 M. Mohan, V. Pandya, R. Anindya*, Escherichia coli AlkB and single-stranded DNA binding protein SSB interaction explored by Molecular Dynamics Simulation, J Mol Graph Model 84 (2018) 29-35.

 R. Nigam, R. Anindya*, Escherichia coli single-stranded DNA binding protein SSB promotes AlkB-mediated DNA dealkylation repair, Biochem Biophys Res Commun 496(2) (2018) 274-279.

  R. Nigam, K.R. Babu, T. Ghosh, B. Kumari, D. Akula, S.N. Rath, P. Das, R. Anindya*, F.A. Khan, Indenone derivatives as inhibitor of human DNA dealkylation repair enzyme AlkBH3, Bioorg Med Chem 26(14) (2018) 4100-4112.

 R. Nigam, M. Mohan, G. Shivange, P.K. Dewangan, R. Anindya*, Escherichia coli AlkB interacts with single-stranded DNA binding protein SSB by an intrinsically disordered region of SSB, Mol Biol Rep 45(5) (2018) 865-870.

  M. Sharma, M. Das, D. Diana, A. Wedderburn, R. Anindya*, Identification of novel open reading frames in the intergenic regions of Mycobacterium leprae genome and detection of transcript by qRT-PCR, Microb Pathog 124 (2018) 316-321.

 G.P. Singh, R. Nigam, G.S. Tomar, M. Monisha, S.K. Bhoi, A. S, K. Sengar, D. Akula, P. Panta, R. Anindya*, Early and rapid detection of UCHL1 in the serum of brain-trauma patients: a novel gold nanoparticle-based method for diagnosing the severity of brain injury, Analyst 143(14) (2018) 3366-3373.

 G.S. Tomar, G.P. Singh, D. Lahkar, K. Sengar, R. Nigam, M. Mohan, R. Anindya*, New biomarkers in brain trauma, Clin Chim Acta 487 (2018) 325-329.

 Sharma M, Akula D, Mohan M, Nigam R, Das M, Anindya R*. Heteroexpression of Mycobacterium leprae hypothetical protein ML0190 provides protection against DNA-alkylating agent methyl methanesulfonate. Biochem Biophys Res Commun. 509(3) (2018) 779-783.

 M Mohan, D Akula, A Dhillon, A Goyal, Anindya R*. Human RAD51 paralogue RAD51C fosters repair of alkylated DNA by interacting with the ALKBH3 demethylase (2019) Nucleic Acids Res.  47(22):11729-11745.

Tufegdzic Vidakovic A, Harreman M, Dirac-Svejstrup AB, Boeing S, Anindya R, Encheva V, Neumann M, Wilson M, Snijders AP, Svejstrup JQ. Analysis of RNA polymerase II ubiquitylation and proteasomal degradation. Methods. (2019)159-160:146-156.

 R Anindya. Single-stranded DNA damage: Protecting the single-stranded DNA from chemical attack (2020) DNA Repair  87:102804.

Symmetrical and un-symmetrical curcumin analogues as selective COX-1 and COX-2 inhibitor. Mohan M, Hussain MA, Khan FA, Anindya R*. Eur J Pharm Sci. (2021);160:105743.

 Oxidative demethylase ALKBH5 repairs DNA alkylation damage and protects against alkylation-induced toxicity. Akula D, O'Connor TR, Anindya R*. Biochem Biophys Res Commun. (2021) 534:114-120.

Synthesis and antibacterial activities of marine natural product Ianthelliformisamines and subereamine synthetic analogues. Narayan Khadake S, Karamathulla S, Kumar Jena T, Monisha M, Kumar Tuti N, Ahmed Khan F, Anindya R*. Bioorg Med Chem Lett. 1:127883. doi: 10.1016/j.bmcl.2021.127883.

 A comparative analysis of computational tools for the prediction of epigenetic DNA methylation from long-read sequencing data.  Shruta Sandesh Pai,  Aimee Rachel Mathew, Anindya R*. bioRxiv 2021.04.24.441281; doi: https://doi.org/10.1101/2021.04.24.441281* corresponding author

 Shaji, U. P., Tuti, N., Das, S., Anindya, R., & Mohan, M. (2022). Interactions between HIV protease inhibitor         ritonavir and human DNA repair enzyme ALKBH2: a molecular dynamics simulation study. Molecular diversity,     10.1007/s11030-022-10444-2. https://doi.org/10.1007/s11030-022-10444-2 

Anindya R. (2022). Cytoplasmic DNA in cancer cells: Several pathways that potentially limit DNase2 and TREX1  activities. Biochimica et biophysica acta. Molecular cell research, 1869(8), 119278.                          https://doi.org/10.1016/j.bbamcr.2022.119278 

Anindya, R., Rutter, G.A. and Meur, G. (2023), New-onset type 1 diabetes and severe acute respiratory syndrome coronavirus 2 infection. Immunol Cell Biol, 101: 191-203. https://doi.org/10.1111/imcb.12615 

Seenivasan, G., Ahmad, S. A. Z., Tuti, N. K., Shaji, U. P., Das, S., Khan, F. A., & Anindya, R. (2024). Evaluation of a panel of furochromenones as the activator and inhibitor of tyrosinase. Chemical biology & drug design, 103(5), e14539. https://doi.org/10.1111/cbdd.14539 

Shaji, U. P., Tuti, N., Alim, S. K., Mohan, M., Das, S., Meur, G., Swamy, M. J., & Anindya, R. (2024). Inhibition of human DNA alkylation damage repair enzyme ALKBH2 by HIV protease inhibitor ritonavir. DNA repair, 141, 103732. https://doi.org/10.1016/j.dnarep.2024.103732 

Chakraborty N, Sen B, Anindya R, Acharyya SG. Excellent adsorption of toxic Cd (II) ions from water with effective antibacterial activity by novel GO-ZnO-curcumin composite. Environ Sci Pollut Res Int. 2024 Aug;31(39):51971-51990. doi: 10.1007/s11356-024-34685-w. 

Das, S., Shahnaz, N., Keerthana, C., Ranjan, S., Seenivasan, G., Tuti, N., ... & Anindya, R. (2025). Functional and comparative analysis of the FeII/2-oxoglutarate-dependent dioxygenases without using any substrate. Biology Methods and Protocols, 10(1), bpae096. 

Tuti, N., Shaji, U. P., Das, S., & Anindya, R. (2025). Effect of methyl DNA adducts on 3’-5’exonuclease activity of human TREX1. Biochemical Journal, 482(05), 263-273. 

Tuti, N., Rathnam, S. S. V., Jangra, J., Rath, S. N., Meur, G., & Anindya, R. (2025). Effect of methyl DNA adducts on stimulation of human cytoplasmic DNA‐sensor cyclic GMP‐AMP synthase (cGAS). Immunology and Cell Biology. 

Shaji, U. P., Khatua, R. R., Rankawat, S., Rathnam, S. S. V., Jangra, J., Ray, S., ... & Anindya, R. (2025). A cell-permeable fluorescent probe for imaging of DNA repair protein ALKBH2. Talanta, 128659. 

Das, S., Rankawat, S., Shaji, U. P., Tuti, N., Shahnaz, N., Ray, S., & Anindya, R. (2025). Identification of ALKBH6 as a nucleotide demethylase with a distinct substrate preference. Journal of Biological Chemistry, 110638.