Publications

Sherekar S, Todankar CS, Viswanathan GA. Modulating the dynamics of NFkB and PI3K enhances the ensemble-level TNFR1 signaling mediated apoptotic response. npj Systems Biology and Applications 2023;9:57 (Impact factor: 4.67) article pdf.
Biswas S, Baisakhi T, Kar S, Viswanathan GA* Modulation of signaling cross-talk between pJNK and pAKT generates optimal apoptotic response. PLoS Comput Biol. 2022 pdf
Japhalekar K, Srinivasan S, Viswanathan GA*, Venkatesh KV*. Theoretical analysis for overproduction of organic acids by Synechocystis sp. PCC 6803 under dark anoxic condition. 2021 pdf
Parundekar A, Viswanathan GA. Retroactivity induced operating regime transition in an enzymatic futile cycle. PLoS One 2021;16:e0250830 pdf
Sherekar S, Viswanathan GA. Boolean dynamic modelling of cancer signaling networks: Prognosis, progression and therapeutics. Comp and Syst Oncol 2021;1:e1017 pdf
Parundekar A*, Kalantre G*, Khadpekar A, Viswanathan GA. Operating regimes in a single enzymatic cascade at ensemble-level. PLoS One 2019;8:e0220243 pdf
Narendiran K, Viswanathan GA. Wall temperature modulates transversal spatiotemporal pattern selection in shallow, non-adiabatic packed-bed reactors. Ind. & Eng. Chem. Res. 2019;58:11787-11798 pdf
Manohar S*, Shah P*, Biswas S*, Mukadam A, Joshi M, Viswanathan GA. Combining fluorescent cell barcoding and flow cytometry-based phospho-ERK1/2 detection at short time-scales in adherent cells. Cytometry A 2019;95A:192-200 (Impact factor: 3.26) pdf [Editor's pick as a featured article]
Kalantre G, Viswanathan GA. Reconstruction of ensemble of single cell time trajectories from discrete-time fluorescence data: Oscillatory MAPK dynamics. IFAC FOSBE 2016;49:184-189 pdf
Narendiran K, Viswanathan GA. Impact of wall heat transport on transversal pattern formation in shallow, non-adiabatic packed-bed reactors. Ind. & Eng. Chem. Res. 2015;54:7352-7363. (Impact factor: 3.14; Cited: 1) pdf
Krishnakumar S, Gaudana SB, Vinh NX, Viswanathan GA, Chetty M, Wangikar PP. Coupling of cellular processes and their coordinated oscillations under continuous light in Cyanothece sp. ATCC 51142, a diazotrophic unicellular cyanobacterium. PLoS One 2015;10:e0125148. (Impact factor: 2.76 ; Cited: 3) pdf
Krishnakumar S, Gaudana SB, Digmurti MG, Viswanathan GA, Chetty M, Wangikar PP. Influence of mixotrophic growth on rhythmic oscillations in expression of metabolic pathways in diazotrophic cyanobacterium Cyanothece sp. ATCC 51142. Bioresource Technology 2015;188:145. (Impact factor: 5.65; Cited: 1) pdf
Gaudana S*, Krishnakumar S*, Alagesan S, Digmurti M, Viswanathan GA, Chetty M, Wangikar PP. Rhythmic and sustained oscillations in metabolism and gene expression of Cyanothece sp. ATCC 51142 under constant light. Frontiers in Microbiology 2013;4:474. (Impact factor: 4.01; Cited: 8) pdf
Baraskar AA*, Deb A*, Viswanathan GA. Noise propagation in series enzymatic cascades. Proceedings of the 12th IFAC Symposium on Computer Applications in Biotechnology, 2013;12-Part 1:89-94. pdf
Krishnakumar S*, Durai DA*, Wangikar PP, Viswanathan GA. SHARP: Genome-scale identification of gene-protein-reaction associations in cyanobacteria. Photosynthesis Research. 2013;118:181-190 (Impact factor: 3.09; Cited 3 times) pdf
Kolios G, Luss D, Garg R, Viswanathan GA. Efficient computation of periodic state of cyclic fixed-bed processes. Chem. Engng Sci. 2013;101:90-98. (Impact factor: 2.89; Cited: 2 times) pdf
Krishnakumar S, Gaudana S, Viswanathan GA, Pakrasi H, Wangikar PP. Rhythm of carbon and nitrogen fixation in unicellular cyanobacteria under turbulent and highly aerobic conditions. Biotech. & Bioengg. 2013;110:2371-2379. (Impact factor: 3.95; Cited 15 times) pdf
Dhananjaneyulu V*, Vidya Ananda Sagar P*, Gopalakrishnan K*, Viswanathan GA. Noise propagation in two-step series MAPK cascade. PLoS One 2012;7:e35958. (Impact factor: 2.76; Cited 4 times) pdf
Kulkarni VV, Venkatesh KV, Viswanathan GA, Riedel M. Characterizing the Memory of the GAL Regulatory Network in Saccharomyces cerevisiae. Systems and Synthetic Biology 2011;5:97-104. (Cited: 1 time)pdf
Kulkarni VV, Kareenhalli VV, Malakar P, Pao LY, Safonov MG, Viswanathan GA. Stability analysis of the GAL regulatory network in Saccharomyces cerevisiae and Kluyveromyces lactis. BMC Bioinformatics 2010;11(Suppl 1):S43. (Impact factor: 2.44; Cited 12 times) pdf
Viswanathan GA, Jayaprakash C, Sealfon SC, Hayot F. Shared kinase fluctuations between two enzymatic reactions. Phys. Biol. 2008;5:046002. (Impact factor: 1.84; Cited 2 times) pdf
Viswanathan GA, Sheintuch M, Luss D. Transversal hot zones formation in catalytic packed-bed reactors. Ind. & Eng. Chem. Res. 2008;47:7509-7523 (100th Anniversary issue). (Impact factor: 3.14; Cited 11 times) pdf
Viswanathan GA, Seto J, Patil S, Nudelman G, Sealfon SC. Getting started in biological pathway construction and analysis. PLoS Computational Biology 2008;4(2):e16. (Impact factor: 4.59; Cited 60 times) pdf
Viswanathan GA*, Nudelman G*, Patil S, Sealfon SC. BioPP: A tool for web-publication of biological pathways. BMC Bioinformatics 2007;8:168. (Impact factor: 2.44; Cited 13 times) pdf
Sundarram S, Viswanathan GA, Luss D. Reactor diameter impact on hot zone dynamics in an adiabatic packed bed reactor. AIChE J. 2007;53:1578-1590. (Impact factor: 3.35; Cited 5 times) pdf
Viswanathan GA, Luss D. Hot zones formation and dynamics in long adiabatic packed-bed reactors. Ind. & Eng. Chem. Res., 2006;45:7057-7066. (Impact factor: 3.14; Cited 11 times) pdf
Viswanathan GA, Luss D. Model prediction of hot spots formation in shallow, adiabatic packed-bed reactors. AIChE J., 2006;52:1533-1538. (Impact factor: 3.35; Cited 15 times) pdf
Viswanathan GA, Luss D. Moving transversal hot zones in adiabatic, shallow packed bed reactors. AIChE J., 2006;52:705-717. (Impact factor: 3.35; Cited 17 times) pdf erratum
Viswanathan GA, Bindal A, Khinast J, Luss D. Stationary transversal hot zones in adiabatic packed bed reactors. AIChE J., 2005;51:3028-3038. (Impact factor: 3.35; Cited 18 times) pdf
Viswanathan GA, Ramana Rao BVR, Vijayavalli R. Solid Waste Management - A review. Proceedings of National Seminar on New Trends in Electrochemical Sci. and Tech., Karaikudi, 1995.

Book chapters

Viswanathan GA, Narendiran K. Mathematical modeling and analyses of biological networks. In Systems and Synthetic Biology, Vol. 4. Ed. V. Singh, "Recent Developments in Biotechnology", Series Ed. J.N. Govil, Studium Press, 2014.

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