1. Funamizu A, Karakida R. Modeling natural neural networks of decision making with artificial neural networks. Neuroscience Research (2025) doi:10.1016/j.neures.2025.104961. 

2. Ishii H. Funamizu A. Nakamura K. Monkeys adjust goals and strategies in a foraging task based on time constraints. Current Biology (2025) doi: 10.1016/j.cub.2025.08.034. 

3. Wang S, Gao H, Ueoka Y, Ishizu K, Funamizu A. Global neural encoding of behavioral strategies in mice during perceptual decision-making task with two different sensory patterns. iScience, 111182 (2024) 

4. Ishizu K, Nishimoto S, Ueoka Y, Funamizu A. Localized and global representation of prior value, sensory evidence, and choice in male mouse cerebral cortex. Nature Communications, 15, 4071 (2024)

5. Funamizu A, Marbach F, Zador AM. Stable sound decoding despite modulated sound representation in the auditory cortex. Current Biology, 33, 1-14 (2023)

6. Funamizu A, Integration of sensory evidence and reward expectation in mouse perceptual decision-making task with various sensory uncertainties. iScience, 24 (8) 102826 (2021)

7. Funamizu A, Kuhn B, Doya K. Neural substrate of dynamic Bayesian inference in the cerebral cortex. Nature Neuroscience, 19, pp. 1682–1689 (2016)

8. Funamizu A, Ito M, Doya K, Kanzaki R, Takahashi H. Condition interference in rats performing a choice task with switched variable- and fixed-reward conditions. Frontiers in Neuroscience, 9 (27), fnins.2015.00027 (2015)

9. Funamizu A, Kanzaki R, Takahashi H. Pre-Attentive, context-specific representation of fear memory in the auditory cortex of rat. Plos One, 8 (5), e63655 (2013)

10. Funamizu A, Ito M, Doya K, Kanzaki R, Takahashi H. Uncertainty in action-value estimation affects both action choice and learning rate of the choice behaviors of rats. European Journal of Neuroscience, 35 (7), pp. 1180–1189 (2012)

11. Funamizu A, Kanzaki R, Takahashi H. Distributed representation of tone frequency in highly decodable spatio-temporal activity in the auditory cortex. Neural Networks, 24 (4), pp. 321-332 (2011)

Preprints

1. Hira R, Imamura F, Imamura H, Yoneyama Y, Handa T, Fujioka O, Yu C-H, Suitoh S, Hira R, Kamoshida A, Kato S, Kobayashi K, Shiwaku H, Takahashi H, Smith S.L., Funamizu A, Isomura Y. Open-source modular FPGA system for two-photon mesoscope enabling multi-layer, multi-depth neural activity recording and lifetime imaging. bioRxiv (2025) doi: https://doi.org/10.1101/2025.08.13.669807 

2. Ueoka Y, Maeda H, Wang S, Funamizu A. Real-cyber hybrid neural network for predicting neural circuits in mouse decision-making. bioRxiv (2024) doi: https://doi.org/10.1101/2024.10.15.618576 

3. Wang S, Gao H, Ishizu K, Funamizu A. Global neural encoding of model-free and inference-based strategies in mice. bioRxiv, (2024) doi: https://doi.org/10.1101/2024.02.08.579559 (published in Iscience)

4. Ishizu K, Nishimoto S, Funamizu A. Localized and global computation for integrating prior value and sensory evidence in the mouse cerebral cortex. bioRxiv, (2023) doi: https://doi.org/10.1101/2023.06.06.543645 (published in Nature Communications)

5. Funamizu A, Marbach F, Zador AM. Stable sound decoding despite modulated sound representation in the auditory cortex. bioRxiv, (2023) doi: https://doi.org/10.1101/2023.01.31.526457 (published in Current Biology)

日本語の総説

1. 山田航太、兎田幸司、船水章大 ：人工知能、40巻2号 (2025)

2. 荒木峻、船水章大：日本神経回路学会、32巻1号 (2025) 

3. 船水章大：Clinical Neuroscience -意思決定と行動選択の神経科学- Vol.39, (2021) 

4. 船水章大：日本神経回路学会 -げっ歯類システム神経科学- Vol.27 No.3-4 (2020)

5. 船水章大，銅谷賢治：生体の科学 -脳と心の謎はどこまで解けたか-Vol.66  (2015)