Publications

Jia-Ru Wu, Pei-Chieh Lu, Aye Aye Khine, Sailent Rizki Sari Simaremare, Chien-Chi Hung, Lin-Ming Yiin, Tsung-Jung Ho, Chi-Hua Tung & Hao-Ping Chen, "Borneol dehydrogenase from Pseudomonas sp. TCU-HL1 possesses novel quinuclidinone reductase activities," 2021 Aug, Biocatalysis and Biotransformation, (SCI) https://doi.org/10.1080/10242422.2021.1955865

Chi-Hua Tung, Yi-Sheng Chang, Kai-Po Chang, Yen-Wei Chu, "NIgPred: Class-Specific Antibody Prediction for Linear B-Cell Epitopes Based on Heterogeneous Features and Machine-Learning Approaches," 2021 Aug, Viruses, 13(8):1531. (SCI) https://doi.org/10.3390/v13081531

Chi-Hua Tung, Yen‐Ta Lu, Wei‐Ting Kao, Jen‐Wei Liu, Yi‐Hsuan Lai, Shinn‐Jong Jiang, Hao‐Ping Chen, Tzenge‐Lien Shih, "Discovery of a more potent anticancer agent than C4‐benzazole 1,8‐naphthalimide derivatives against murine melanoma," 2020, JOURNAL OF THE CHINESE CHEMICAL SOCIETY, 67(7): 1254–1262. (SCI, 128/172, CHEMISTRY, MULTIDISCIPLINARY) https://doi.org/10.1002/jccs.202000019

Chi-Hua Tung, Ching-Hsuan Chien, Chi-Wei Chen, Lan-Ying Huang, Yu-Nan Liu, Yen-Wei Chu, "QUATgo: Protein quaternary structural attributes predicted by two-stage machine learning approaches with heterogeneous feature encoding," 2020, PLoS ONE, 15(4): e0232087. (SCI, 24/69, MULTIDISCIPLINARY SCIENCES) https://doi.org/10.1371/journal.pone.0232087

Bao-Ju Chen, Ju Chuko, Chi-Hua Tung, Kuang-Yu Hu, "Efficacy and Safety of Exenatide versus Insulin in Type 2 Diabetes Mellitus: Systematic Review and Meta-Analysis ," 2019, International Journal of Management, Economics and Social Sciences, 8(3), 253–265. (EI)

Chi-Chang Chang, Chi-Hua Tung, Chi-Wei Chen, Chin-Hau Tu, Yen-Wei Chu, "SUMOgo: Prediction of sumoylation sites on lysines by motif screening models and the effects of various post-translational modifications," 2018, SCIENTIFIC REPORTS, 8(2018), 15512. (SCI, 12/64, MULTIDISCIPLINARY SCIENCES)

Chi-Hua Tung, Jih-Hsu Chang, Jose C. Nacher, "Unveiling disease protein associations by navigating a structural alphabet-encoded protein network," 2017, International Journal of Management, Economics and Social Sciences, 6(S1), 274-292. (EI)

Chi-Hua Tung, Pei-Wei Shueng, Yen-Wei Chu, Chi-Wei Chen, and Chian-Ying Chen, "Identifying Post-Translational Modification Crosstalks for Breast Cancer," 2017, Journal of Computing Science and Engineering, 11(4), 111-120. (EI) http://dx.doi.org/10.5626/JCSE.2017.11.4.111

Han-Yueh Kuo, Hsuan-Hao Chao, Po-Cheng Liao, Long Hsu, Kai-Chih Chang, Chi-Hua Tung, Chang-Hua Chen, and Ming-Li Liou, "Functional characterization of Acinetobacter baumannii lacking the RNA chaperone Hfq," 2017, Frontiers in Microbiology, 8, 2068. (SCI) http://doi.org/10.3389/fmicb.2017.02068

Chi-Hua Tung, Chi-Wei Chen, Han-Hao Sun, and Yen-Wei Chu, "Predicting human protein subcellular localization by heterogeneous and comprehensive approaches," 2017, PLoS ONE, 12(6): e0178832. (SCI, 11/63, MULTIDISCIPLINARY SCIENCES) https://doi.org/10.1371/journal.pone.0178832

Chi-Hua Tung, Chi-Wei Chen, Ren-Chao Guo, Hui-Fuang Ng, and Yen-Wei Chu, "QuaBingo: A Prediction System for Protein Quaternary Structure Attributes Using Block Composition," 2016, BioMed Research International, Volume 2016 (2016). (SCI, 82/161, BIOTECHNOLOGY & APPLIED MICROBIOLOGY) http://dx.doi.org/10.1155/2016/9480276

Guan-Fu Chen, Chi-Hua Tung, "A Study on Improving Prediction of the Human Disease Proteins using Local Structural Similarity Network with Neighborhood Level Enhancement," 2016, Journal of Information Technology and Applications, 10(1), 9-18

Li-Wei Chuang, Chi-Hua Tung, "A Study of Residue Contact Number Among the Amino Acid and Structural Alphabet," 2015, Journal of Information Technology and Applications, 9(2), 37-46

Jung Yeh, Chi-Hua Tung, "The Study of Protein Backbone Reconstruction by Applying Structural Alphabet," 2015, Journal of Information Technology and Applications, 9(1), 1-7

Kai-Chieh Yang, Chi-Hua Tung, "Determining the similarity of discrete fragments in protein structural motif," 2014, Journal of Information Technology and Applications, 8(3), 56-62

Chi-Hua Tung and Jose C. Nacher, "A Complex Network Approach for the Analysis of Protein Units Similarity Using Structural Alphabet," 2013, International Journal of Bioscience, Biochemistry and Bioinformatics, 3(5), p. 433-437.

Min-Gang Su, Kai-Yao Huang, Chi-Hua Tung, Tzong-Yi Lee, "A New Scheme to Predict Kinase-Specific Phosphorylation Sites on Protein Three Dimensional Structures," 2013, International Journal of Bioscience, Biochemistry and Bioinformatics, 3(5), p. 473-478.

Chi-Hua Tung and Jinn-Moon Yang, "fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies," 2007, Nucleic Acids Research, 35: W438-W443. (SCI, 5-Year IF: 7.314, Ranking: 30/286)

Chi-Hua Tung, Jhang-Wei Huang, and Jinn-Moon Yang, "Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for fast protein structure database search," 2007, Genome Biology, 8: R31.1-R31.16. (SCI, 5-Year IF: 7.354, Ranking: 11/160, 17/156)

Jinn-Moon Yang and Chi-Hua Tung, "Protein structure database search and evolutionary classification," 2006, Nucleic Acids Research, 34: 3646-3659. (SCI, 5-Year IF: 7.314; Ranking: 30/286)

Bao-Ju Chen, Ju Chuko, Chi-Hua Tung, Kuang-Yu Hu, "Efficacy and Safety of Exenatide versus Insulin in Type 2 Diabetes Mellitus: Systematic Review and Meta-Analysis," 2nd International Conference on Medical and Health Informatics, June 2018. (oral presentation)

Chi-Hua Tung, Jinn-Moon Yang and Jose C. Nacher, "Uncovering the Tertiary Protein Organization Based on Structural UnitsNetworks," The 2nd Taiwan-Japan Young Researchers Conference on Computational and Systems Biology, November 2008. (oral presentation)

Chi-Hua Tung, Teng-Kai Yang and Jinn-Moon Yang, "Structural Binding Pocket Clustering and Protein-Ligand Interaction Analysis for ATP-binding Proteins," 15th Annual International Conference on Intelligent Systems for Molecular Biology & 6th European Conference on Computational Biology, July 2007. (poster)