Selected Publications

Després PC, Gervais NC, Fogal M, Rogers RKJ, Cuomo CA, Shapiro RS. Targeted loss of heterozygosity in Candida albicans using CRISPR-Cas9 reveals the functional impact of allelic variation. Genetics. 2025 Oct 8;231(2):iyaf154. doi: 10.1093/genetics/iyaf154. PMID: 40794772; PMCID: PMC12505295.

Stott KE, Mohabir JT, Bowers K, Tenor JL, Toffaletti DL, Unsworth J, Jimenez-Valverde A, Ahmadu A, Moyo M, Gondwe E, Chimang'anga W, Chasweka M, Lawrence DS, Jarvis JN, Harrison T, Hope W, Lalloo DG, Mwandumba HC, Perfect JR, Cuomo CA; AMBITION Study Group. Integration of genomic and pharmacokinetic data to predict clinical outcomes in HIV-associated cryptococcal meningitis. mBio. 2024 Oct 16;15(10):e0159224. doi: 10.1128/mbio.01592-24. Epub 2024 Aug 27. PMID: 39189739; PMCID: PMC11481554.

Després PC, Shapiro RS, Cuomo CA. New approaches to tackle a rising problem: Large-scale methods to study antifungal resistance. PLoS Pathog. 2024 Sep 5;20(9):e1012478. doi: 10.1371/journal.ppat.1012478. PMID: 39236046; PMCID: PMC11376582.

Sephton-Clark P, Nguyen T, Hoa NT, Ashton P, van Doorn HR, Ly VT, Le T, Cuomo CA. Impact of pathogen genetics on clinical phenotypes in a population of Talaromyces marneffei from Vietnam. Genetics. 2023 Aug 9;224(4):iyad100. doi: 10.1093/genetics/iyad100. PMID: 37226893; PMCID: PMC10411598.

Sephton-Clark P, Tenor JL, Toffaletti DL, Meyers N, Giamberardino C, Molloy SF, Palmucci JR, Chan A, Chikaonda T, Heyderman R, Hosseinipour M, Kalata N, Kanyama C, Kukacha C, Lupiya D, Mwandumba HC, Harrison T, Bicanic T, Perfect JR, Cuomo CA. Genomic Variation across a Clinical Cryptococcus Population Linked to Disease Outcome. mBio. 2022 Dec 20;13(6):e0262622. doi: 10.1128/mbio.02626-22. Epub 2022 Nov 10. PMID: 36354332; PMCID: PMC9765290.

Muñoz JF, Welsh RM, Shea T, Batra D, Gade L, Howard D, Rowe LA, Meis JF, Litvintseva AP, Cuomo CA. Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris. Genetics. 2021 May 17;218(1):iyab029. doi: 10.1093/genetics/iyab029. PMID: 33769478; PMCID: PMC8128392.