Publications

Full list: Iris.uniroma1.it 

• Structural basis of molecular recognition of pyridoxal 5′-phosphate in a bacterial periplasmic binding protein
  Quaranta, Miriana; Pascarella, Stefano - 01a Articolo in rivistarivista: BIOPHYSICAL CHEMISTRY (Elsevier BV:PO Box 211, 1000 AE Amsterdam Netherlands:011 31 20 4853757, 011 31 20 4853642, 011 31 20 4853641, EMAIL: nlinfo-f@elsevier.nl, INTERNET: http://www.elsevier.nl, Fax: 011 31 20 4853598) pp. - - issn: 0301-4622 - wos: (0) - scopus: 2-s2.0-105019758283 (0)

• Exploring the genetic diversity of the 3' untranslated region (UTR) of Dengue virus
  Lo Presti, Alessandra; Knijn, Arnold; Palermo, Enrico; D'auria, Alessandra; Quaranta, Miriana; Pascarella, Stefano; Frasca, Federica; Scagnolari, Carolina - 01a Articolo in rivistarivista: VIROLOGY JOURNAL (London : Biomed Central) pp. - - issn: 1743-422X - wos: (0) - scopus: 2-s2.0-105008733248 (0)

• Structural analysis of the SARS-CoV-2 Spike N-terminal domain across wild-type and recent variants: a comparative study
  Quaranta, Miriana; Via, Allegra; Pascarella, Stefano - 01a Articolo in rivistarivista: PROTEINS (New York, NY : John Wiley & Sons) pp. - - issn: 1097-0134 - wos: (0) - scopus: 2-s2.0-105007809964 (0)

• SARS-CoV-2 XEC: A genome-based survey
  Scarpa, Fabio; Branda, Francesco; Ceccarelli, Giancarlo; Romano, Chiara; Locci, Chiara; Pascale, Noemi; Azzena, Ilenia; Fiori, Pier Luigi; Casu, Marco; Pascarella, Stefano; Quaranta, Miriana; Benvenuto, Domenico; Cauda, Roberto; Ciccozzi, Massimo; Sanna, Daria - 01a Articolo in rivistarivista: MICROORGANISMS (Basel: MDPI) pp. - - issn: 2076-2607 - wos: WOS:001430062800001 (2) - scopus: 2-s2.0-85219057504 (2)

• SARS-CoV-2 uses Spike glycoprotein to control the host's anaerobic metabolism by inhibiting LDHB
  Monaco, Vittoria; Iacobucci, Ilaria; Canè, Luisa; Cipollone, Irene; Ferrucci, Veronica; De Antonellis, Pasqualino; Quaranta, Miriana; Pascarella, Stefano; Zollo, Massimo; Monti, Maria - 01a Articolo in rivistarivista: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES (-Attuale :ELSEVIER SCIENCE BV, PO BOX 211, AMSTERDAM, NETHERLANDS, 1000 AE -Butterworth Heinemann Publishers:Linacre House Jordan Hill, Oxford OX2 8DP United Kingdom:011 44 1865 314569, EMAIL: bhmarketing@repp.co.uk, INTERNET: http://www.laxtonsprices.co.uk, Fax: 011 44 1865 314569) pp. 1-10 - issn: 0141-8130 - wos: WOS:001301293700001 (4) - scopus: 2-s2.0-85201622794 (4)

• SARS-CoV CH.1.1 variant: Genomic and structural insight
  Bazzani, Liliana; Imperia, Elena; Scarpa, Fabio; Sanna, Daria; Casu, Marco; Borsetti, Alessandra; Pascarella, Stefano; Petrosillo, Nicola; Cella, Eleonora; Giovanetti, Marta; Ciccozzi, Massimo - 01a Articolo in rivistarivista: INFECTIOUS DISEASE REPORTS (Basel: MDPI Pavia: PAGEPress) pp. 292-298 - issn: 2036-7449 - wos: WOS:001017257000001 (10) - scopus: 2-s2.0-85163576849 (12)

• Two sides of the same coin: the N-terminal and the receptor binding domains of SARS-CoV-2 Spike
  Ciccozzi, Massimo; Pascarella, Stefano - 01m Editorial/Introduzione in rivistarivista: FUTURE VIROLOGY (London : Future Medicine, 2006-) pp. 75-78 - issn: 1746-0794 - wos: WOS:000944000000001 (6) - scopus: 2-s2.0-85150485943 (6)

• Epidemic history and evolution of an emerging threat of international concern, the severe acute respiratory syndrome coronavirus 2
  Giovanetti, Marta; Branda, Francesco; Cella, Eleonora; Scarpa, Fabio; Bazzani, Liliana; Ciccozzi, Alessandra; Slavov, Svetoslav Nanev; Benvenuto, Domenico; Sanna, Daria; Casu, Marco; Santos, Luciane Amorim; Lai, Alessia; Zehender, Giangluglielmo; Caccuri, Francesca; Ianni, Andrea; Caruso, Arnaldo; Maroutti, Antonello; Pascarella, Stefano; Borsetti, Alessandra; Ciccozzi, Massimo - 01a Articolo in rivistarivista: JOURNAL OF MEDICAL VIROLOGY (-Hoboken, NJ : John Wiley & Sons Incorporated -[New York] Alan R. Liss, 1977-) pp. - - issn: 0146-6615 - wos: WOS:001059179200034 (16) - scopus: 2-s2.0-85166593662 (22)

•  IncRna: The R Package for Optimizing lncRNA Identification Processes
  Jastrzebski, Jan Pawel; Pascarella, Stefano; Lipka, Aleksandra; Dorocki, Slawomir - 01a Articolo in rivistarivista: JOURNAL OF COMPUTATIONAL BIOLOGY (Mary Ann Liebert Incorporated:2 Madison Avenue:Larchmont, NY 10538:(914)834-3100, EMAIL: info@liebertpub.com, swilliams@liebertpub.com, INTERNET: http://www.liebertpub.com, Fax: (914)834-3688) pp. 1322-1326 - issn: 1066-5277 - wos: WOS:001106207800001 (1) - scopus: 2-s2.0-85176217020 (2)

• Resources and tools for rare disease variant interpretation
  Licata, Luana; Via, Allegra; Turina, Paola; Babbi, Giulia; Benevenuta, Silvia; Carta, Claudio; Casadio, Rita; Cicconardi, Andrea; Facchiano, Angelo; Fariselli, Piero; Giordano, Deborah; Isidori, Federica; Marabotti, Anna; Martelli, Pier Luigi; Pascarella, Stefano; Pinelli, Michele; Pippucci, Tommaso; Russo, Roberta; Savojardo, Castrense; Scafuri, Bernardina; Valeriani, Lucrezia; Capriotti, Emidio - 01a Articolo in rivistarivista: FRONTIERS IN MOLECULAR BIOSCIENCES (Lausanne : Frontiers Media S.A., 2014-) pp. - - issn: 2296-889X - wos: WOS:001000438900001 (10) - scopus: 2-s2.0-85160058924 (10)

•  Integrative genome-based survey of the SARS-CoV-2 Omicron XBB.1.16 variant  
  Scarpa, Fabio; Azzena, Ilenia; Ciccozzi, Alessandra; Giovanetti, Marta; Locci, Chiara; Casu, Marco; Fiori, Pier Luigi; Borsetti, Alessandra; Cella, Eleonora; Quaranta, Miriana; Pascarella, Stefano; Sanna, Daria; Ciccozzi, Massimo - 01a Articolo in rivistarivista: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (Basel: MDPI Center) pp. 13573- - issn: 1422-0067 - wos: WOS:001060646300001 (8) - scopus: 2-s2.0-85170222859 (8)

•  Molecular in-depth on the epidemiological expansion of SARS-CoV-2 XBB.1.5
  Scarpa, Fabio; Azzena, Ilenia; Locci, Chiara; Casu, Marco; Fiori, Pier Luigi; Ciccozzi, Alessandra; Angeletti, Silvia; Imperia, Elena; Giovanetti, Marta; Maruotti, Antonello; Borsetti, Alessandra; Cauda, Roberto; Cassone, Antonio; Via, Allegra; Pascarella, Stefano; Sanna, Daria; Ciccozzi, Massimo - 01a Articolo in rivistarivista: MICROORGANISMS (Basel: MDPI) pp. 912- - issn: 2076-2607 - wos: WOS:000977957200001 (13) - scopus: 2-s2.0-85156271815 (13)

• Update on the phylodynamic and genetic variability of Marburg virus  
  Scarpa, Fabio; Bazzani, Liliana; Giovanetti, Marta; Ciccozzi, Alessandra; Benedetti, Francesca; Zella, Davide; Sanna, Daria; Casu, Marco; Borsetti, Alessandra; Cella, Eleonora; Pascarella, Stefano; Maruotti, Antonello; Ciccozzi, Massimo - 01a Articolo in rivistarivista: VIRUSES (Basel: MDPI) pp. 1721- - issn: 1999-4915 - wos: WOS:001056054600001 (4) - scopus: 2-s2.0-85168731033 (5)

• Genome-based survey of the SARS-CoV-2 BF.7 variant from Asia
  Scarpa, Fabio; Giovanetti, Marta; Azzena, Ilenia; Locci, Chiara; Casu, Marco; Fiori, Pier Luigi; Ciccozzi, Alessandra; Imperia, Elena; Bazzani, Liliana; Borsetti, Alessandra; Maruotti, Antonello; Pascarella, Stefano; Sanna, Daria; Ciccozzi, Massimo - 01a Articolo in rivistarivista: JOURNAL OF MEDICAL VIROLOGY (-Hoboken, NJ : John Wiley & Sons Incorporated -[New York] Alan R. Liss, 1977-) pp. - - issn: 0146-6615 - wos: WOS:000989594000009 (7) - scopus: 2-s2.0-85152909164 (9)

•  Genetic and structural genome-based survey reveals the low potential for epidemiological expansion of the SARS-CoV-2 XBB.1.5 sublineage
  Scarpa, Fabio; Imperia, Elena; Azzena, Ilenia; Giovanetti, Marta; Benvenuto, Domenico; Locci, Chiara; Casu, Marco; Fiori, Pier Luigi; Maruotti, Antonello; Ceccarelli, Giancarlo; Borsetti, Alessandra; Caruso, Arnaldo; Cauda, Roberto; Cassone, Antonio; Via, Allegra; Pascarella, Stefano; Sanna, Daria; Ciccozzi, Massimo - 01f Lettera, Notarivista: JOURNAL OF INFECTION (Harcourt Publishers Limited:Foots Cray High Street, Sidcup Kent DA14 5HP United Kingdom:011 44 20 83085700, EMAIL: journals@harcourt.com, INTERNET: http://www.harcourt-international.com, Fax: 011 44 20 83085876) pp. - - issn: 0163-4453 - wos: WOS:001000883300001 (9) - scopus: 2-s2.0-85152910788 (10)

•   Khosta: a genetic and structural point of view of the forgotten virus
  Scarpa, Fabio; Imperia, Elena; Ciccozzi, Alessandra; Pascarella, Stefano; Quaranta, Miriana; Giovanetti, Marta; Borsetti, Alessandra; Petrosillo, Nicola; Ciccozzi, Massimo - 01a Articolo in rivistarivista: INFECTIOUS DISEASE REPORTS (Basel: MDPI Pavia: PAGEPress) pp. 307-318 - issn: 2036-7449 - wos: WOS:001015080100001 (0) - scopus: 2-s2.0-85163620243 (0)

• SARS-CoV-2 recombinants: genomic comparison between XBF and its parental lineages
  Scarpa, Fabio; Locci, Chiara; Azzena, Ilenia; Casu, Marco; Fiori, Pier Luigi; Ciccozzi, Alessandra; Giovanetti, Marta; Quaranta, Miriana; Ceccarelli, Giancarlo; Pascarella, Stefano; Ciccozzi, Massimo; Sanna, Daria - 01a Articolo in rivistarivista: MICROORGANISMS (Basel: MDPI) pp. 1824- - issn: 2076-2607 - wos: WOS:001036434100001 (7) - scopus: 2-s2.0-85166175166 (7)

•  Genetic and structural analyses reveal the low potential of the SARS‐CoV‐2 EG.5 variant
  Scarpa, Fabio; Pascarella, Stefano; Ciccozzi, Alessandra; Giovanetti, Marta; Azzena, Ilenia; Locci, Chiara; Casu, Marco; Fiori, Pier Luigi; Quaranta, Miriana; Cella, Eleonora; Sanna, Daria; Ciccozzi, Massimo - 01a Articolo in rivistarivista: JOURNAL OF MEDICAL VIROLOGY (-Hoboken, NJ : John Wiley & Sons Incorporated -[New York] Alan R. Liss, 1977-) pp. - - issn: 0146-6615 - wos: WOS:001079032200006 (10) - scopus: 2-s2.0-85169649654 (9)

•  Genome-based comparison between the recombinant SARS-CoV-2 XBB and its parental lineages
  Scarpa, Fabio; Sanna, Daria; Azzena, Ilenia; Casu, Marco; Cossu, Piero; Fiori, Pier Luigi; Benvenuto, Domenico; Imperia, Elena; Giovanetti, Marta; Ceccarelli, Giancarlo; Cauda, Roberto; Cassone, Antonio; Pascarella, Stefano; Ciccozzi, Massimo - 01a Articolo in rivistarivista: JOURNAL OF MEDICAL VIROLOGY (-Hoboken, NJ : John Wiley & Sons Incorporated -[New York] Alan R. Liss, 1977-) pp. - - issn: 0146-6615 - wos: WOS:000960340500053 (32) - scopus: 2-s2.0-85151167783 (32)

•  Avian influenza A H5N1: are we really sure it is a spillover?
  Scarpa, Fabio; Sanna, Daria; Giovanetti, Marta; Pascarella, Stefano; Casu, Marco; Ciccozzi, Massimo - 01a Articolo in rivistarivista: PATHOGENS AND GLOBAL HEALTH (London : Maney Publishing, 2012-) pp. 1-3 - issn: 2047-7724 - wos: WOS:000970552500001 (6) - scopus: 2-s2.0-85152786853 (6)

• SARS-CoV-2 pandemic tracing in Italy highlights lineages with mutational burden in growing subsets
  Boccia, Angelo; Tufano, Rossella; Ferrucci, Veronica; Sepe, Leandra; Bianchi, Martina; Pascarella, Stefano; Zollo, Massimo; Paolella, Giovanni - 01a Articolo in rivistarivista: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (Basel: MDPI Center) pp. 4155- - issn: 1422-0067 - wos: WOS:000786123700001 (2) - scopus: 2-s2.0-85127744823 (4)

• The biological properties of the SARS-CoV-2 Cameroon variant spike: an intermediate between the Alpha and Delta variants
  Pascarella, Stefano; Bianchi, Martina; Giovanetti, Marta; Benvenuto, Domenico; Borsetti, Alessandra; Cauda, Roberto; Cassone, Antonio; Ciccozzi, Massimo - 01a Articolo in rivistarivista: PATHOGENS (Basel : Multidisciplinary Digital Publishing Institute) pp. 814- - issn: 2076-0817 - wos: WOS:000833884600001 (1) - scopus: 2-s2.0-85135624714 (1)

• The SARS-CoV-2 mu variant shouldn't be left aside: it warrants attention for its immuo-escaping ability
  Pascarella, Stefano; Bianchi, Martina; Giovanetti, Marta; Narzi, Daniele; Cauda, Roberto; Cassone, Antonio; Ciccozzi, Massimo - 01a Articolo in rivistarivista: JOURNAL OF MEDICAL VIROLOGY (-Hoboken, NJ : John Wiley & Sons Incorporated -[New York] Alan R. Liss, 1977-) pp. - - issn: 0146-6615 - wos: WOS:000761813000001 (6) - scopus: 2-s2.0-85125365933 (5)

•  Peculiar variations of the electrostatic potential of spike protein N-terminal domain associated with the emergence of successive SARS-CoV-2 Omicron lineages
  Pascarella, Stefano; Ciccozzi, Massimo; Benvenuto, Domenico; Borsetti, Alessandra; Cauda, Roberto; Cassone, Antonio - 01f Lettera, Notarivista: JOURNAL OF INFECTION (Harcourt Publishers Limited:Foots Cray High Street, Sidcup Kent DA14 5HP United Kingdom:011 44 20 83085700, EMAIL: journals@harcourt.com, INTERNET: http://www.harcourt-international.com, Fax: 011 44 20 83085876) pp. - - issn: 0163-4453 - wos: WOS:000911667800021 (9) - scopus: 2-s2.0-85138521065 (9)

• The value of electrostatic potentials of the spike receptor binding and N-terminal domains in addressing transmissibility and infectivity of SARS-CoV-2 variants of concern
  Pascarella, Stefano; Ciccozzi, Massimo; Bianchi, Martina; Benvenuto, Domenico; Cauda, Roberto; Cassone, Antonio - 01f Lettera, Notarivista: JOURNAL OF INFECTION (Harcourt Publishers Limited:Foots Cray High Street, Sidcup Kent DA14 5HP United Kingdom:011 44 20 83085700, EMAIL: journals@harcourt.com, INTERNET: http://www.harcourt-international.com, Fax: 011 44 20 83085876) pp. - - issn: 0163-4453 - wos: WOS:000799523700002 (15) - scopus: 2-s2.0-85129301316 (13)

• A novel human neutralizing mAb recognizes delta, gamma and omicron variants of SARS-CoV-2 and can be used in combination with sotrovimab
  Passariello, Margherita; Ferrucci, Veronica; Sasso, Emanuele; Manna, Lorenzo; Lembo, Rosa Rapuano; Pascarella, Stefano; Fusco, Giovanna; Zambrano, Nicola; Zollo, Massimo; De Lorenzo, Claudia - 01a Articolo in rivistarivista: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (Basel: MDPI Center) pp. 5556- - issn: 1422-0067 - wos: WOS:000803694800001 (3) - scopus: 2-s2.0-85131609384 (4)

• On the SARS-CoV-2 BA.2.75 variant: A genetic and structural point of view
  Scarpa, F; Sanna, D; Azzena, I; Giovanetti, M; Benvenuto, D; Angeletti, S; Ceccarelli, G; Pascarella, S; Casu, M; Fiori, Pl; Ciccozzi, M - 01f Lettera, Notarivista: JOURNAL OF MEDICAL VIROLOGY (-Hoboken, NJ : John Wiley & Sons Incorporated -[New York] Alan R. Liss, 1977-) pp. 1-4 - issn: 0146-6615 - wos: WOS:000852298000001 (21) - scopus: 2-s2.0-85137783694 (22)

• Genetic and structural data on the SARS-CoV-2 Omicron BQ.1 variant reveal its low potential for epidemiological expansion
  Scarpa, Fabio; Sanna, Daria; Benvenuto, Domenico; Borsetti, Alessandra; Azzena, Ilenia; Casu, Marco; Fiori, Pier Luigi; Giovanetti, Marta; Maruotti, Antonello; Ceccarelli, Giancarlo; Caruso, Arnaldo; Caccuri, Francesca; Cauda, Roberto; Cassone, Antonio; Pascarella, Stefano; Ciccozzi, Massimo - 01a Articolo in rivistarivista: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (Basel: MDPI Center) pp. 1-12 - issn: 1422-0067 - wos: WOS:000896526300001 (20) - scopus: 2-s2.0-85143716845 (22)

• The bayesian reconstruction and the evolutionary history of salivirus type 1 and type 2: the worldwide spreading
  Angeletti, Silvia; Benvenuto, Domenico; Fogolari, Marta; De Flora, Cecilia; Ceccarelli, Giancarlo; Maida, Ivana; Bazzardi, Riccardo; Spoto, Silvia; Pascarella, Stefano; Mugosa, Boban; Ciccozzi, Massimo - 01a Articolo in rivistarivista: JOURNAL OF INFECTION IN DEVELOPING COUNTRIES (Sassari : OLoeP (Open Learning on Enteric Pathogens )) pp. 280-288-288 - issn: 1972-2680 - wos: WOS:000631902900016 (0) - scopus: 2-s2.0-85102597678 (0)

•  SARS-CoV-2 AY.4.2 variant circulating in Italy: genomic preliminary insight
  Angeletti, Silvia; Giovanetti, Marta; Fogolari, Marta; Cella, Eleonora; De Florio, Lucia; Lintas, Carla; Veralli, Roberta; Francesconi, Maria; Caccuri, Francesca; De Cesaris, Marina; De Flora, Cecilia; Ceccarelli, Giancarlo; Spoto, Silvia; Caruso, Arnaldo; Pascarella, Stefano; Riva, Elisabetta; Ciccozzi, Massimo - 01a Articolo in rivistarivista: JOURNAL OF MEDICAL VIROLOGY (-Hoboken, NJ : John Wiley & Sons Incorporated -[New York] Alan R. Liss, 1977-) pp. - - issn: 0146-6615 - wos: WOS:000719383100001 (11) - scopus: 2-s2.0-85119078595 (11)

• SARS-Cov-2 ORF3a: mutability and function
  Bianchi, Martina; Borsetti, Alessandra; Ciccozzi, Massimo; Pascarella, Stefano - 01a Articolo in rivistarivista: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES (-Attuale :ELSEVIER SCIENCE BV, PO BOX 211, AMSTERDAM, NETHERLANDS, 1000 AE -Butterworth Heinemann Publishers:Linacre House Jordan Hill, Oxford OX2 8DP United Kingdom:011 44 1865 314569, EMAIL: bhmarketing@repp.co.uk, INTERNET: http://www.laxtonsprices.co.uk, Fax: 011 44 1865 314569) pp. 820-826 - issn: 0141-8130 - wos: WOS:000613921400074 (69) - scopus: 2-s2.0-85098969761 (77)

• SARS-CoV-2 lineages and sub-lineages circulating worldwide: a dynamic overview
  Cella, Eleonora; Benedetti, Francesca; Fabris, Silvia; Borsetti, Alessandra; Pezzuto, Aldo; Ciotti, Marco; Pascarella, Stefano; Ceccarelli, Giancarlo; Zella, Davide; Ciccozzi, Massimo; Giovanetti, Marta - 01a Articolo in rivistarivista: CHEMOTHERAPY (Basel: S. Karger, 1968-) pp. 1-5-5 - issn: 1421-9794 - wos: WOS:000632547300001 (31) - scopus: 2-s2.0-85103316494 (31)

• Long-chain polyphosphates impair SARS-CoV-2 infection and replication
  Ferrucci, Veronica; Kong, Dae-Young; Asadzadeh, Fatemeh; Marrone, Laura; Boccia, Angelo; Siciliano, Roberto; Criscuolo, Giuseppina; Anastasio, Camilla; Quarantelli, Fabrizio; Comegna, Marika; Pisano, Ida; Passariello, Margherita; Iacobucci, Ilaria; Monica, Rosa Della; Izzo, Barbara; Cerino, Pellegrino; Fusco, Giovanna; Viscardi, Maurizio; Brandi, Sergio; Pierri, Bianca Maria; Borriello, Giorgia; Tiberio, Claudia; Atripaldi, Luigi; Bianchi, Martina; Paolella, Giovanni; Capoluongo, Ettore; Castaldo, Giuseppe; Chiariotti, Lorenzo; Monti, Maria; De Lorenzo, Claudia; Yun, Kyong-Seop; Pascarella, Stefano; Cheong, Jae-Ho; Kim, Hong-Yeoul; Zollo, Massimo - 01a Articolo in rivistarivista: SCIENCE SIGNALING () pp. eabe5040- - issn: 1937-9145 - wos: WOS:000675603900002 (30) - scopus: 2-s2.0-85109431828 (30)

• SARS-CoV-2 shifting transmission dynamics and hidden reservoirs potentially limit efficacy of public health interventions in Italy
  Giovanetti, Marta; Cella, Eleonora; Benedetti, Francesca; Rife Magalis, Brittany; Fonseca, Vagner; Fabris, Silvia; Campisi, Giovanni; Ciccozzi, Alessandra; Angeletti, Silvia; Borsetti, Alessandra; Tambone, Vittoradolfo; Sagnelli, Caterina; Pascarella, Stefano; Riva, Alberto; Ceccarelli, Giancarlo; Marcello, Alessandro; Azarian, Taj; Wilkinson, Eduan; De Oliveira, Tulio; Alcantara, Luiz Carlos Junior; Cauda, Roberto; Caruso, Arnaldo; Dean, Natalie E; Browne, Cameron; Lourenco, Jose; Salemi, Marco; Zella, Davide; Ciccozzi, Massimo - 01a Articolo in rivistarivista: COMMUNICATIONS BIOLOGY ([London]: Springer Nature) pp. 489- - issn: 2399-3642 - wos: WOS:000643938500002 (25) - scopus: 2-s2.0-85104775295 (28)

• The electrostatic potential of the Omicron variant spike is higher than in Delta and Delta-plus variants: a hint to higher transmissibility?
  Pascarella, Stefano; Ciccozzi, Massimo; Bianchi, Martina; Benvenuto, Domenico; Cauda, Roberto; Cassone, Antonio - 01a Articolo in rivistarivista: JOURNAL OF MEDICAL VIROLOGY (New York, NY : Wiley-Liss) pp. - - issn: 1096-9071 - wos: WOS:000734477700001 (58) - scopus: 2-s2.0-85121741554 (55)

• Shortening epitopes to survive: the case of SARS-CoV-2 lambda variant
  Pascarella, Stefano; Ciccozzi, Massimo; Bianchi, Martina; Benvenuto, Domenico; Giovanetti, Marta; Cauda, Roberto; Cassone, Antonio - 01a Articolo in rivistarivista: BIOMOLECULES (Basel: MDPI) pp. 1-9 - issn: 2218-273X - wos: WOS:000716966100001 (5) - scopus: 2-s2.0-85116799846 (5)

• SARS-CoV-2 B.1.617 Indian variants: are electrostatic potential changes responsible for a higher transmission rate?
  Pascarella, Stefano; Ciccozzi, Massimo; Zella, Davide; Bianchi, Martina; Benetti, Francesca; Benvenuto, Domenico; Broccolo, Francesco; Cauda, Roberto; Caruso, Arnaldo; Angeletti, Silvia; Giovanetti, Marta; Cassone, Antonio - 01a Articolo in rivistarivista: JOURNAL OF MEDICAL VIROLOGY (-Hoboken, NJ : John Wiley & Sons Incorporated -[New York] Alan R. Liss, 1977-) pp. 6551-6556 - issn: 0146-6615 - wos: WOS:000678554400001 (78) - scopus: 2-s2.0-85111278823 (86)

• The importance of genomic analysis in cracking the Coronavirus pandemic
  Zella, Davide; Giovanetti, Marta; Cella, Eleonora; Borsetti, Alessandra; Ciotti, Marco; Ceccarelli, Giancarlo; D'ettorre, Gabriella; Pezzuto, Aldo; Tambone, Vittoradolfo; Campanozzi, Laura; Magheri, Marco; Unali, Francesco; Bianchi, Martina; Benedetti, Francesca; Pascarella, Stefano; Angeletti, Silvia; Ciccozzi, Massimo - 01a Articolo in rivistarivista: EXPERT REVIEW OF MOLECULAR DIAGNOSTICS (--London, United Kingdom: Expert Reviews Ltd -London : Future Drugs, 2001-) pp. - - issn: 1473-7159 - wos: WOS:000648136300001 (15) - scopus: 2-s2.0-85105127504 (18)

•  COVID-2019: the role of the nsp2 and nsp3 in its pathogenesis
  Angeletti, Silvia; Benvenuto, Domenico; Bianchi, Martina; Giovanetti, Marta; Pascarella, Stefano; Ciccozzi, Massimo - 01a Articolo in rivistarivista: JOURNAL OF MEDICAL VIROLOGY (New York, NY : Wiley-Liss) pp. - - issn: 1096-9071 - wos: WOS:000526462000014 (233) - scopus: 2-s2.0-85080113316 (279)

•   Evolutionary analysis of SARS-CoV-2: how mutation of Non-Structural Protein 6 (NSP6) could affect viral autophagy
  Benvenuto, D.; Angeletti, S.; Giovanetti, M.; Bianchi, M.; Pascarella, S.; Cauda, R.; Ciccozzi, M.; Cassone, A. - 01a Articolo in rivistarivista: JOURNAL OF INFECTION (Harcourt Publishers Limited:Foots Cray High Street, Sidcup Kent DA14 5HP United Kingdom:011 44 20 83085700, EMAIL: journals@harcourt.com, INTERNET: http://www.harcourt-international.com, Fax: 011 44 20 83085876) pp. e24-e27 - issn: 0163-4453 - wos: WOS:000540819000005 (179) - scopus: 2-s2.0-85083339362 (195)

•  Evidence for mutations in SARS-CoV-2 Italian isolates potentially affecting virus transmission
  Benvenuto, Domenico; Demir Ayse, Banu; Giovanetti, Marta; Bianchi, Martina; Angeletti, Silvia; Pascarella, Stefano; Cauda, Roberto; Ciccozzi, Massimo; Cassone, Antonio - 01a Articolo in rivistarivista: JOURNAL OF MEDICAL VIROLOGY (New York, NY : Wiley-Liss) pp. - - issn: 1096-9071 - wos: WOS:000541079500001 (17) - scopus: 2-s2.0-85087152353 (18)

•  Sars-cov-2 envelope and membrane proteins: structural differences linked to virus characteristics?
  Bianchi, Martina; Benvenuto, Domenico; Giovanetti, Marta; Angeletti, Silvia; Ciccozzi, Massimo; Pascarella, Stefano - 01a Articolo in rivistarivista: BIOMED RESEARCH INTERNATIONAL ([London]: [Hindawi] Cairo: Hindawi Publishing Corporation) pp. - - issn: 2314-6133 - wos: WOS:000540576700008 (128) - scopus: 2-s2.0-85086857382 (150)

•  Response to Ribeiro da Silva et al.,"role of nonstructural proteins in the pathogenesis of sars-cov-2
  Ciccozzi, Massimo; Benvenuto, Domenico; Giovanetti, Marta; Bianchi, Martina; Pascarella, Stefano; Angeletti, Silvia - 01f Lettera, Notarivista: JOURNAL OF MEDICAL VIROLOGY (-Hoboken, NJ : John Wiley & Sons Incorporated -[New York] Alan R. Liss, 1977-) pp. - - issn: 0146-6615 - wos: WOS:000537005400001 (0) - scopus: 2-s2.0-85083865909 (2)

• Covid-19 outbreak: an overview
  Ciotti, Marco; Angeletti, Silvia; Minieri, Marilena; Giovannetti, Marta; Benvenuto, Domenico; Pascarella, Stefano; Sagnelli, Caterina; Bianchi, Martina; Bernardini, Sergio; Ciccozzi, Massimo - 01a Articolo in rivistarivista: CHEMOTHERAPY (S Karger AG:Allschwilerstrasse 10, CH-4009 Basel Switzerland:011 41 61 3061111, EMAIL: orders@karger.ch, INTERNET: http://www.karger.com, Fax: 011 41 61 3061234) pp. 1-9-9 - issn: 0009-3157 - wos: WOS:000547517300001 (244) - scopus: 2-s2.0-85083169416 (290)

•  Molecular dynamics of an asymmetric form of GabR, a bacterial transcriptional regulator
  Frezzini, Mario; Narzi, Daniele; Maria Sciolari, Assia; Guidoni, Leonardo; Pascarella, Stefano - 01a Articolo in rivistarivista: BIOPHYSICAL CHEMISTRY (Elsevier BV:PO Box 211, 1000 AE Amsterdam Netherlands:011 31 20 4853757, 011 31 20 4853642, 011 31 20 4853641, EMAIL: nlinfo-f@elsevier.nl, INTERNET: http://www.elsevier.nl, Fax: 011 31 20 4853598) pp. - - issn: 0301-4622 - wos: WOS:000534365400002 (4) - scopus: 2-s2.0-85084345742 (6)

•  Interaction of Bacillus subtilis GabR with the gabTD promoter: role of repeated sequences and effect of GABA in transcriptional activation
  Nardella, C.; Barile, A.; Di Salvo, M. L.; Milano, T.; Pascarella, S.; Tramonti, A.; Contestabile, R. - 01a Articolo in rivistarivista: THE FEBS JOURNAL (Blackwell Pub., Oxford, UK) pp. - - issn: 1742-464X - wos: WOS:000520859400001 (10) - scopus: 2-s2.0-85082088243 (10)

• Structural analysis of merkel cell polyomavirus (MCPyV) viral capsid protein 1 (VP1) in HIV-1 infected individuals
  Prezioso, Carla; Bianchi, Martina; Obregon, Francisco; Ciotti, Marco; Sarmati, Loredana; Andreoni, Massimo; Palamara, Anna Teresa; Pascarella, Stefano; Moens, Ugo; Pietropaolo, Valeria Antonietta - 01a Articolo in rivistarivista: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (Basel (Matthaeustrasse 11) : Molecular Diversity Preservation International MDPI) pp. - - issn: 1661-6596 - wos: WOS:000589166400001 (11) - scopus: 2-s2.0-85094982386 (11)

• Phylogeny of culex theileri virus flavivirus in Spain, Myanmar, Portugal and Turkey
  Cella, Eleonora; Benvenuto, Domenico; Donati, Daniele; Garilli, Francesco; Angeletti, Silvia; Pascarella, Stefano; Ciccozzi, Massimo - 01a Articolo in rivistarivista: ASIAN PACIFIC JOURNAL OF TROPICAL MEDICINE (OXFORD, ENGLAND, : ELSEVIER SCI LTD, >Haikou, Hainan province China: Hainan Medical College.) pp. 216-223 - issn: 1995-7645 - wos: WOS:000470899600003 (3) - scopus: 2-s2.0-85067110699 (3)

• Conformational transitions induced by γ-amino butyrate binding in GabR, a bacterial transcriptional regulator
  Frezzini, Mario; Guidoni, Leonardo; Pascarella, Stefano - 01a Articolo in rivistarivista: SCIENTIFIC REPORTS (London: Springer Nature London: Nature Publishing Group) pp. 19319- - issn: 2045-2322 - wos: WOS:000503213000003 (8) - scopus: 2-s2.0-85076518957 (8)

•  Computational classification of MocR transcriptional regulators into subgroups as a support for experimental and functional characterization
  Pascarella, Stefano - 01a Articolo in rivistarivista: BIOINFORMATION (Chennai : Biomedical Informatics Pvt. Ltd.) pp. 151-159 - issn: 0973-8894 - wos: WOS:000481417400010 (3) - scopus: (0)

•  Multi-drug resistant Pseudomonas aeruginosa nosocomial strains: Molecular epidemiology and evolution
  Angeletti, Silvia; Cella, Eleonora; Prosperi, Mattia; Spoto, Silvia; Fogolari, Marta; De Florio, Lucia; Antonelli, Francesca; Dedej, Etleva; De Flora, Cecilia; Ferraro, Elisabetta; Incalzi, Raffaele Antonelli; Coppola, Roberto; Dicuonzo, Giordano; Francescato, Fabio; Pascarella, Stefano; Ciccozzi, Massimo - 01a Articolo in rivistarivista: MICROBIAL PATHOGENESIS (Elsevier Science Limited:Oxford Fulfillment Center, PO Box 800, Kidlington Oxford OX5 1DX United Kingdom:011 44 1865 843000, 011 44 1865 843699, EMAIL: asianfo@elsevier.com, tcb@elsevier.co.UK, INTERNET: http://www.elsevier.com, http://www.elsevier.com/locate/shpsa/, Fax: 011 44 1865 843010) pp. 233-241 - issn: 0882-4010 - wos: WOS:000452578500036 (28) - scopus: 2-s2.0-85050135287 (28)

• Mayaro virus infection, the next epidemic wave after Zika? Evolutionary and structural analysis
  Cella, Eleonora; Giovanetti, Marta; Milano, Teresa; Fogolari, Marta; Garilli, Francesco; Alexiev, Ivailo; Bazzardi, Riccardo; Salemi, Marco; Junior Alcantara, Luiz; Angeletti, Silvia; Pascarella, Stefano; Ciccozzi, Massimo - 01a Articolo in rivistarivista: ASIAN PACIFIC JOURNAL OF TROPICAL MEDICINE (OXFORD, ENGLAND, : ELSEVIER SCI LTD, >Haikou, Hainan province China: Hainan Medical College.) pp. 194-201 - issn: 1995-7645 - wos: WOS:000428837700003 (2) - scopus: 2-s2.0-85045470334 (2)

• A comprehensive computational analysis of Mycobacterium genomes pinpoints the genes co-occurring with ycze, a membrane protein coding gene under the putative control of a mocr, and predicts its function
  Milano, Teresa; Angelaccio, Sebastiana; Tramonti, Angela; Di Salvo, Martino Luigi; Nogues, Isabel; Contestabile, Roberto; Pascarella, Stefano - 01a Articolo in rivistarivista: INTERDISCIPLINARY SCIENCES: COMPUTATIONAL LIFE SCIENCES (Berlin: Springer) pp. 111-125 - issn: 1913-2751 - wos: WOS:000426823400011 (4) - scopus: 2-s2.0-85042877382 (3)

• The MocR-like transcription factors: pyridoxal 5'-phosphate-dependent regulators of bacterial metabolism
  Tramonti, Angela; Nardella, Caterina; Di Salvo, Martino L.; Pascarella, Stefano; Contestabile, Roberto - 01a Articolo in rivistarivista: THE FEBS JOURNAL (Blackwell Pub., Oxford, UK) pp. - - issn: 1742-464X - wos: WOS:000449688600003 (27) - scopus: 2-s2.0-85050355937 (28)

• Study of DNA binding and bending by Bacillus subtilis GabR, a PLP-dependent transcription factor
  Amidani, Davide; Tramonti, Angela; Canosa, Andrea Valeria; Campanini, Barbara; Maggi, Stefano; Milano, Teresa; Di Salvo, Martino Luigi; Pascarella, Stefano; Contestabile, Roberto; Bettati, Stefano; Rivetti, Claudio - 01a Articolo in rivistarivista: BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (Elsevier BV:PO Box 211, 1000 AE Amsterdam Netherlands:011 31 20 4853757, 011 31 20 4853642, 011 31 20 4853641, EMAIL: nlinfo-f@elsevier.nl, INTERNET: http://www.elsevier.nl, Fax: 011 31 20 4853598) pp. 3474-3489 - issn: 0304-4165 - wos: WOS:000390736300052 (19) - scopus: 2-s2.0-84994410820 (17)

• Molecular dynamics simulation unveils the conformational flexibility of the interdomain linker in the bacterial transcriptional regulator GabR from Bacillus subtilis bound to pyridoxal 5'-phosphate
  Milano, Teresa; Gulzar, Adnan; Narzi, Daniele; Guidoni, Leonardo; Pascarella, Stefano - 01a Articolo in rivistarivista: PLOS ONE (San Francisco, CA : Public Library of Science) pp. e0189270- - issn: 1932-6203 - wos: WOS:000418389500019 (11) - scopus: 2-s2.0-85038954212 (10)

• Hepatitis C virus genotype 3A in a population of injecting drug users in Montenegro: Bayesian and evolutionary analysis
  Mugosa, B.; Cella, Eleonora; Lai, A; Lo Presti, Alessandra; Blasi, A; Vratnica, Z.; Vujoševic, D; Ebranati, E; Lauševic, D; Guarino, M; Zehender, Gianguglielmo; Milano, Teresa; Pascarella, Stefano; Spoto, S; Angeletti, Silvia; Ciccozzi, Massimo - 01a Articolo in rivistarivista: ARCHIVES OF VIROLOGY (Springer-Verlag Wien:Sachsenplatz 4-6, PO Box 89, A-1201 Vienna Austria:011 43 1 3302415, EMAIL: springer@springer.co.at, INTERNET: http://link.springer-ny.com, Fax: 011 43 1 3302426) pp. 1-13 - issn: 0304-8608 - wos: WOS:000401119300010 (3) - scopus: 2-s2.0-85012241695 (3)

• Salmonella typhimurium PtsJ is a novel MocR-like transcriptional repressor involved in regulating the vitamin B6 salvage pathway
  Tramonti, Angela; Milano, Teresa; Nardella, Caterina; Di Salvo, Martino Luigi; Pascarella, Stefano; Contestabile, Roberto - 01a Articolo in rivistarivista: THE FEBS JOURNAL (Blackwell Pub., Oxford, UK) pp. 466-484 - issn: 1742-464X - wos: WOS:000393601800010 (14) - scopus: 2-s2.0-85008498867 (15)

• Data from computational analysis of the peptide linkers in the mocr bacterial transcriptional regulators
  Angelaccio, Sebastiana; Milano, Teresa; Tramonti, Angela; Di Salvo, Martino Luigi; Contestabile, Roberto; Pascarella, Stefano - 01a Articolo in rivistarivista: DATA IN BRIEF (New York : Elsevier Inc.) pp. 292-313 - issn: 2352-3409 - wos: WOS:000453170500046 (6) - scopus: 2-s2.0-85011789751 (6)

• Klebsiella pneumoniae blaKPC-3 nosocomial epidemic: Bayesian and evolutionary analysis
  Angeletti, S; Lo Presti, A; Cella, Eleonora; Fogolari, M; De Florio, L; Dedej, E; Blasi, A; Milano, Teresa; Pascarella, Stefano; Incalzi, R. A; Coppola, R; Dicuonzo, G; Ciccozzi, M. - 01a Articolo in rivistarivista: INFECTION GENETICS AND EVOLUTION (Elsevier BV:PO Box 211, 1000 AE Amsterdam Netherlands:011 31 20 4853757, 011 31 20 4853642, 011 31 20 4853641, EMAIL: nlinfo-f@elsevier.nl, INTERNET: http://www.elsevier.nl, Fax: 011 31 20 4853598) pp. 85-93 - issn: 1567-1348 - wos: WOS:000390456000014 (6) - scopus: 2-s2.0-84993967034 (6)

• Zika Virus spreading in South America: evolutionary analysis of emerging neutralizing resistant Phe279Ser strains
  Giovanetti, Marta; Milano, Teresa; Alcantara, Luiz Carlos; Carcangiu, Laura; Cella, Eleonora; Lai, Alessia; Lo Presti, Alessandra; Pascarella, Stefano; Zehender, Gianguglielmo; Angeletti, Silvia; Ciccozzi, Massimo - 01a Articolo in rivistarivista: ASIAN PACIFIC JOURNAL OF TROPICAL MEDICINE (OXFORD, ENGLAND, : ELSEVIER SCI LTD, >Haikou, Hainan province China: Hainan Medical College.) pp. 445-452 - issn: 1995-7645 - wos: WOS:000375359100006 (13) - scopus: 2-s2.0-84964316512 (16)

• A bioinformatics analysis reveals a group of MocR bacterial transcriptional regulators linked to a family of genes coding for membrane proteins
  Milano, Teresa; Angelaccio, Sebastiana; Tramonti, Angela; Di Salvo, Martino Luigi; Contestabile, Roberto; Pascarella, Stefano - 01a Articolo in rivistarivista: BIOCHEMISTRY RESEARCH INTERNATIONAL (Cairo: Hindawi Publishing Corporation) pp. ...-... - issn: 2090-2247 - wos: WOS:000379482800001 (7) - scopus: 2-s2.0-84982806318 (8)

• Structural properties of the linkers connecting the n- and c- terminal domains in the mocr bacterial transcriptional regulators
  Milano, Teresa; Angelaccio, Sebastiana; Tramonti, Angela; Di Salvo, Martino Luigi; Contestabile, Roberto; Pascarella, Stefano - 01a Articolo in rivistarivista: BIOCHIMIE OPEN (Elsevier) pp. 8-18 - issn: 2214-0085 - wos: (0) - scopus: 2-s2.0-84980398163 (10)

• On the mechanism of Escherichia coli pyridoxal kinase inhibition by pyridoxal and pyridoxal 5'-phosphate
  Di Salvo, Martino Luigi; Nogués, I; Parroni, Alessia; Tramonti, A; Milano, Teresa; Pascarella, Stefano; Contestabile, Roberto - 01a Articolo in rivistarivista: BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (Tokyo ; Oxford ; New York ; London ; Amsterdam ; Shannon ; Paris : Elsevier) pp. - - issn: 1570-9639 - wos: WOS:000358466500012 (23) - scopus: 2-s2.0-84937627738 (25)

•  The aspartate aminotransferase-like domain of Firmicutes mocr transcriptional regulators
  Milano, Teresa; Contestabile, Roberto; Lo Presti, Alessandra; Ciccozzi, Massimo; Pascarella, Stefano - 01a Articolo in rivistarivista: COMPUTATIONAL BIOLOGY AND CHEMISTRY (Oxford : Elsevier, c2003-) pp. 55-61 - issn: 1476-9271 - wos: WOS:000364897700006 (16) - scopus: 2-s2.0-84930670598

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