Publications
2017:
1. M. Buas, H. Gu, D. Djukovic, J. Zhu, L. Onstad, B. Reid, D. Raftery*, T. Vaughan*, “Candidate serum metabolite biomarkers for differentiating gastroesophageal reflux disease, Barrett's esophagus, and high-grade dysplasia/esophageal adenocarcinoma”, Metabolomics, 13, 23, 2017. PMCID: PMC5295138
2. H. Lu, H. Zhu*, T. Zhu, Y. Xiao, S. Xie, H. Gu, M. Cui, L. Luo, “Metabolic Effects of Clenbuterol and Salbutamol on Pork Meat Studied Using Internal Extractive Electrospray Ionization Mass Spectrometry”, Sci. Reports, 7, 5136, 2017. PMCID: PMC5506000.
3. T. Li, Z. Zhang, S. Kolwicz, L. Abell, N. Roe, M. Kim, B. Zhou, Y. Cao, J. Ritterhoff, H. Gu, D. Raftery, H. Sun, R. Tian*, “Defective Branched-Chain Amino Acid Catabolism Disrupts Glucose Metabolism and Sensitizes the Heart to Ischemia-Reperfusion Injury”, Cell Metab., 25, 374-385, 2017. PMCID: PMC5301464.
4. J. Rabinowitz, A. Robitaille, Y. Wang, C. Ray, R. Thummel, H. Gu, D. Djukovic, D. Raftery, J. Berndt, R. Moon*, “Transcriptomic, proteomic, and metabolomic landscape of positional memory in the caudal fin of zebrafish”, PNAS, 114, E717-E726, 2017. PMCID: PMC5293114.
2016:
1. H. Gu, J. Du, P. A. Carroll, J. Zhu, F. Carnevale Neto, R. N. Eisenman, D. Raftery*, “Quantitative Method to Investigate the Balance between Metabolism and Proteome Biomass: Starting from Glycine”, Angew. Chem. Int. Ed., 55, 15656-15650, 2016. PMID: 27860107.
2. L. Deng+, H. Gu+*, J. Zhu, G. A. Nagana Gowda, D. Djukovic, E. G. Chiorean, D. Raftery*, “Combining NMR and LC/MS Using Backward Variable Elimination: Metabolomics Analysis of Colorectal Cancer, Polyps, and Healthy Controls”, Anal. Chem., 88, 7975-7983, 2016. PMID: 27437783
3. M. Buas, H. Gu, D. Djukovic, J. Zhu, C. W. Drescher, N. Urban, D. Raftery, C. Li*, “Identification of novel candidate plasma metabolite biomarkers for distinguishing serous ovarian carcinoma and benign serous ovarian tumors”, Gynecol. Oncol., 140, 138-144, 2016. PMID: 26521694
4. M. Heitkemper*, C. Han, M. Jarrett, H. Gu, D. Djukovic, R. Shulman, D. Raftery, W. Henderson, K. Cain, “Serum Tryptophan Metabolite Levels During Sleep in Patients With and Without Irritable Bowel Syndrome (IBS)”, Biol Res Nurs., 18, 193-198, 2016. PMID: 26156003
5. J. Du, A. Rountree, W. M. Cleghorn, L. Contreras, K. J. Lindsay, M. Sadilek, H. Gu, D. Djukovic, D. Raftery, J. Satrústegui, M. Kanow, L. Chan, S. H. Tsang, I. R. Sweet, J. B. Hurley*, “Phototransduction Influences Metabolic Flux and Nucleotide Metabolism in Mouse Retina”, J. Bio. Chem., 291, 4698-4710, 2016. PMCID: PMC4813492
6. Y. Chiao, S. C. Kolwicz, N. Basisty, A. Gagnidze, J. Zhang, H. Gu, D. Djukovic, R. P. Beyer, D. Raftery, M. MacCoss, R. Tian, P. S. Rabinovitch*, “Rapamycin transiently induces mitochondrial remodeling to reprogram energy metabolism in old hearts”, Aging, 8, 314-327, 2016. PMID: 26872208
2015:
1. H. Gu*, P. Zhang, J. Zhu, D. Raftery*, “Globally Optimized Targeted Mass Spectrometry (GOT-MS): Reliable Metabolomics Analysis with Broad Coverage”, Anal, Chem., 87, 12355-12362, 2015. PMID: 26579731
2. H. Sperber, J. Mathieu, Y. Wang, A. Ferreccio, J. Hesson, Z. Xu, K. A. Fischer, A. Devi, D. Detraux, H. Gu, S. L. Battle, M. Showalter, C. Valensisi, J. H. Bielas, N. G. Ericson, L. Margaretha, A. M. Robitaille, D. Margineantu, O. Fiehn, D. Hockenbery, C. A. Blau, D. Raftery, A. A. Margolin, R. D. Hawkins, R. T. Moon, C. B. Ware, H. Ruohola-Baker*, “The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition”, Nat. Cell Bio., 17, 1523-1535, 2015. PMCID: PMC4662931
3. J. Zhu, D. Djukovic, L. Deng, H. Gu, F. Himmati, M. Abu Zaid, E. G. Chiorean, D. Raftery*, “Targeted serum metabolite profiling and sequential metabolite ratio analysis for colorectal cancer progression monitoring”, Anal. Bioanal. Chem., 407, 7857-7863, 2015. PMID: 26342311
4. J. Wang, Q. Li, H. Gu, X. Guo, S. Yang, Z. Wang, “Direct Analysis of Micro Area on Tooth Surface by Surface Desorption Atmospheric Pressure Chemical Ionization Mass Spectrometry”, Chem. J. Chin. Univ., 36, 1067-1073, 2015.
5. H. Gu*, J. Du, F. Carnevale Neto, P. Carroll, S. Turner, G. Chiorean, R. Eisenman, D. Raftery, “Metabolomics Method to Comprehensively Analyze Amino Acids in Different Domains”, Analyst, 140, 2726-2734, 2015. PMCID: PMC4380628
6. P. Carroll, D. Diolaiti, L. McFerrin, H. Gu, D. Djukovic, J. Du, P. Cheng, S. Anderson, M. Ulrich, J. Hurley, D. Raftery, D. Ayer, R. Eisenman*, “Deregulated Myc Requires MondoA/Mlx for Metabolic Reprogramming and Tumorigenesis”, Cancer Cell, 27, 271-285, 2015. PMCID: PMC4326605
7. N. Reyes, G. Banks, M. Tsang, D. Margineantu, H. Gu, D. Djukovic, J. Chan, M. Torres, H. Liggitt, D. Hirenallur-S, D. Hockenbery, D. Raftery, B. Iritani*, “Fnip1 Regulates Skeletal Muscle Fiber Type Specification, Fatigue Resistance, and Susceptibility to Muscular Dystrophy”, PNAS, 112, 424-429, 2015. PMCID: PMC4299192
8. R. Sood, H. Gu, D. Djukovic, L. Deng, M. Ga, L. Muffley, D. Raftery, A. Hocking*, “Targeted Metabolic Profiling of Wounds in Diabetic and Nondiabetic Mice”, Wound Repair Regen., 23, 423-34, 2015. PMID: 25845676
9. S. Barton, S. Navarro, M. Buas, Y. Schwarz, H. Gu, D. Djukovic, D. Raftery, M. Kratz, M. Neuhouser, J. Lampe*, “Targeted Plasma Metabolome Response to Variations in Dietary Glycemic Load in a Randomized, Controlled, Crossover Feeding Trial in Healthy Adults”, Food Funct., 2015. PMID: 26165375
10. S. Pan, Y. Tian, M. Li, J. Zhao, L. Zhu, W. Zhang, H. Gu*, H. Wang, J. Shi, X. Fang, P. Li, H. Chen, “Quantitative Detection of Nitric Oxide in Exhaled Human Breath by Extractive Electrospray Ionization Mass Spectrometry”, Sci. Reports, 5, 8725, 2015. PMCID: PMC4348632
11. C. Chen, L. Deng, S. Wei, G.A.N. Gowda, H. Gu, E.G. Chiorean, M. Abu Zaid, M. Harrison, J. Pekny, P. Patrick, D. Zhang, M. Zhang*, D. Raftery*, “Exploring Metabolic Profile Differences between Colorectal Polyp Patients and Controls Using Seemingly Unrelated Regression”, J. Proteome Res., 14, 2492-2499, 2015. PMID: 25919433
2014:
1. W. Yao, H. Gu, J. Zhu, G. Barding, H. Cheng, B. Bao, L. Zhang*, A. Ding*, W. Li, “Integrated Plasma and Urine Metabolomics Coupled with HPLC/QTOF-MS and Chemometric Analysis on Potential Biomarkers in Liver Injury and Hepatoprotective Effects of Er-Zhi-Wan”, Anal. Bioanal. Chem., 406, 7367-7378, 2014. PMID: 25245419
2. J. Zhu, D. Djukovic, L. Deng, H. Gu, F. Himmati, E. Chiorean, D. Raftery*, “Colorectal Cancer Detection Using Targeted Serum Metabolic Profiling”, J. Proteome Res., 13, 4120-4130, 2014. PMID: 25126899
3. D. Dai, P. Karunadharma, Y. Chiao, N. Basisty, D. Crispin, E. Hsieh, T. Chen, H. Gu, D. Djukovic, D. Raftery, R. Beyer, M. Maccoss, P. Rabinovitch*, “Altered Proteome Turnover and Remodeling by Short-term Caloric Restriction or Rapamycin Rejuvenate the Aging Heart”, Aging Cell, 13, 529-539, 2014. PMCID: PMC4040127
2013:
1. H. Gu, A. N. Gowda, F. Carnevale Neto, M. Opp, D. Raftery*, “RAMSY: Ratio Analysis of Mass Spectrometry to Improve Compound Identification”, Anal. Chem., 85, 10771-10779, 2013. PMCID: PMC3867450
2. N. Xu, Z. Zhu, S. Yang, J. Wang, H. Gu*, H. Chen, “Direct Detection of Amino Acids Using Extractive Electrospray Ionization Tandem Mass Spectrometry”, Chin. J. Anal. Chem., 41, 523–528, 2013.
3. H. Baniasadi, A. N. Gowda, H. Gu, A. Zeng, S. Zhuang, N. Skill, M. Maluccio, D. Raftery*, “Targeted Metabolic Profiling of Hepatocellular Carcinoma and Hepatitis C using LC-MS/MS”, Electrophoresis, 34, 2910-2917, 2013. PMCID: PMC3826436
4. H. Zhang, H. Gu, F. Yan, N. Wang, Y. Wei, J. Xu, H. Chen*, “Direct Characterization of Bulk Samples by Internal Extractive Electrospray Ionization Mass Spectrometry”, Sci. Reports, 3, 2495, 2013. PMCID: PMC3750536
5. M. Li, J. Ding, H. Gu, Y. Zhang, S. Pan, N. Xu, H. Chen*, H. Li, “Facilitated Diffusion of Acetonitrile Revealed by Quantitative Breath Analysis Using Extractive Electrospray Ionization Mass Spectrometry”, Sci. Reports, 3, 1205, 2013. PMCID: PMC3564039
6. Y. Qi, H. Gu, Y. Song, X. Dong, A. Liu, Z. Lou, G. Fan, Y. Chai*, “Metabolomics Study of Resina Draconis on Myocardial Ischemia Rats Using Ultraperformance Liquid Chromatography/Quadrupole Time-of-Flight Mass Spectrometry Combined with Pattern Recognition Methods and Metabolic Pathway Analysis”, Evid. Based Complement. Alternat. Med., 438680, 2013. PMCID: PMC3677627
7. F. Tayyari, A. N. Gowda, H. Gu, D. Raftery*, “15N-Cholamine-A Smart Isotope Tag for Combining NMR- and MS-Based Metabolite Profiling”, Anal. Chem., 85, 8715-8721, 2013. PMCID: PMC3803152
2012:
1. H. Gu, A. N. Gowda, D. Raftery*, "Metabolic Profiling: Are We en route to Better Diagnostic Tests for Cancer?", Future Oncol., 8, 1207-1210, 2012. PMID: 23130920
2. H. Gu, N. Xu, H. Chen*, “Direct Analysis of Biological Samples Using Extractive Electrospray Ionization Mass Spectrometry (EESI-MS)”, Anal. Bioanal. Chem., 403, 2145-2153, 2012. PMID: 22434271
3. H. Gu, Qi, Y. Qi, N. Xu, J. Ding, Y. An, H. Chen*, “Nuclear Magnetic Resonance Spectroscopy and Mass Spectrometry-Based Metabolomics for Cancer Diagnosis”, Chin. J. Anal. Chem., 40, 1933–1937, 2012.
4. C. Liu, X. Zhang, S. Xiao, B. Jia, S. Cui, J. Shi, N. Xu, X. Xie, H. Gu*, H. Chen, “Detection of Trace Levels of Lead in Aqueous Liquids Using Extractive Electrospray Ionization Tandem Mass Spectrometry”, Talanta, 98, 79-85, 2012. PMID: 22939131
5. Z. Zhu, J. Han, Y. Zhan, Y. Zhou, N. Xu, B. Zhang, H. Gu, H. Chen*, “Sensitive Ionization of Non-volatile Analytes Using Protein Solutions as Spray Liquid in Desorption Electrospray Ionization Mass Spectrometry”, Rapid Commun. Mass Spectrom., 26, 2770-2776, 2012. PMID: 23124668
2011:
1. H. Gu, Y. Huang, M. Filgueira, P. W. Carr*, “Effect of First Dimension Phase Selectivity in Online Comprehensive Two Dimensional Liquid Chromatography (LCxLC)”, J. Chrom. A., 1218, 6675-6687, 2011. PMCID: PMC3256932
2. H. Gu, Z. Pan, B. Xi, V. Asiago, B. Musselman, D. Raftery*, “Principal Component Directed Partial Least Squares Analysis for Combining NMR and MS Data in Metabolomics: Application to the Detection of Breast Cancer”, Anal. Chim. Acta, 686, 57-63, 2011. PMCID: PMC3040422
3. Y. Huang, H. Gu, M. Filgueira, P. W. Carr*, “An Experimental Study of Sampling Time Effects on the Resolving Power of Online Two-Dimensional HPLC”, J. Chrom. A., 1218, 2984-2994, 2011. PMCID: PMC3132878
4. B. Hu, S. Yang, M. Li, H. Gu, H. Chen*, “Direct Detection of Native Proteins in Biological Matrices Using Extractive Electrospray Ionization Mass Spectrometry”, Analyst, 136, 3599-3601, 2011. PMID: 21734987
2010:
1. H. Gu, Y. Huang, P. W. Carr*, “Peak Capacity Optimization in Comprehensive Two Dimensional Liquid Chromatography: A Practical Approach”, J. Chrom. A., 1218, 64-73, 2010. PMCID: PMC3034304
2. H. Gu, S. Yang, J. Li, B. Hu, H. Chen*, L. Zhang, Q. Fei, “Geometry Independent Neutral Desorption Device Sampling Explosives on Various Surfaces for Sensitive EESI-MS Detection”, Analyst, 135, 779-788, 2010. PMID: 20349542
3. H. Gu, B. Hu, J. Li, S. Yang, J. Han, H. Chen*, “Rapid Analysis of Aerosol Drugs Using Nano Extractive Electrospray Ionization Tandem Mass Spectrometry”, Analyst, 135, 1259-1267, 2010. PMID: 20498877
4. B. Hu, X. Peng, S. Yang, H. Gu, H. Chen*, Y. Huan, T. Zhang, X. Qiao, “Fast Quantitative Detection of Cocaine in Beverages Using Nanoextractive Electrospray Ionization Tandem Mass Spectrometry”, J. Am. Soc. Mass Spectrom., 21, 290-293, 2010. PMID: 19939702
2009:
1. H. Gu, Z. Pan, B. Xi, B. E. Hainline, N. Shanaiah, V. Asiago, A. N. Gowda, D. Raftery*, “1H NMR Metabolomics Study of Age Profiling in Children”, NMR Biomed., 22, 826-833, 2009. PMCID: PMC4009993
2. S. Yang, J. Han, Y. Huan, Y. Cui, X. Zhang, H. Chen, H. Gu*, “Desorption Electrospray Ionization Tandem Mass Spectrometry for Rapid Detection of 24 Carcinogenic Aromatic Amines in Textiles”, Anal. Chem., 81, 6070-6079, 2009.
3. J. Ding, H. Gu, S. Yang, M. Li, J. Li, H. Chen*, “Selective Detection of Diethylene Glycol in Toothpaste Products Using Neutral Desorption Reactive Extractive Electrospray Ionization Tandem Mass Spectrometry”, Anal. Chem., 81:8632-8638, 2009. PMID: 19761215
4. S. Yang, H. Chen*, Y. Yang, B. Hu, X. Zhang, Y. Zhou, L. Zhang, H. Gu, “Imaging Melamine in Egg Samples by Surface Desorption Atmospheric Pressure Chemical Ionization Mass Spectrometry”, Chin. J. Anal. Chem., 37, 315-318, 2009.
2008:
1. A. N. Gowda, S. Zhang, H. Gu, V. Asiago, N. Shanaiah, D. Raftery*, "Metabolomics-Based Methods for Early Disease Diagnostics: A Review", Expert Rev. Mol. Diagnos., 8, 617-33, 2008. PMCID: PMC3890417
2007:
1. H. Gu, Z. Pan, C. Duda, D. Mann, C. Kissinger, C. Rohde, D. Raftery*, “1H NMR Study of the Effects of Sample Contamination in the Metabolomics Analysis of Mouse Urine”, J. Pharm. Biomed. Anal., 45, 134-140, 2007. PMID: 17707608
2. H. Gu, H. Chen, Z. Pan, A. U. Jackson, N. Talaty, B. Xi, C. Kissinger, C. Duda, D. Mann, D. Raftery*, R. G. Cooks*, “Monitoring Diet Effects from Biofluids and Their Implications for Metabolomics Studies”, Anal. Chem., 79, 89-97, 2007. PMID: 17194125
3. H. Chen, Y. Sun, A. Wortmann, H. Gu, R. Zenobi*, “Differentiation of Maturity and Quality of Fruit Using Noninvasive Extractive Electrospray Ionization Quadrupole Time-of-Flight Mass Spectrometry”, Anal. Chem., 79, 1447-1455, 2007. PMID: 17297943
4. Z. Pan, H. Gu, N. Talaty, H. Chen, B. E. Hainline, R. G. Cooks*, D. Raftery*, “Principal Component Analysis of Urine Metabolites Detected by NMR and DESI-MS in Patients with Inborn Errors of Metabolism”, Anal. Bioanal. Chem., 387, 539-549, 2007. PMID: 16821030