Publications
Selected Publications:
Harmon, C., Bui, A., Espejo, J.M., Gancayco, M., Le, J.M., Rangel, J., and D.K. Eggers: Solvation free energy in governing equations for DNA hybridization, protein–ligand binding, and protein folding. bioRxiv (2024). DOI: 10.1101/2024.03.15.585270
Eggers, D.K., Le, J.M., Nham, N.T., Pham, D.N., and B.M. Castellano: Dual effect of secondary solutes on binding equilibria: Contributions from solute–reactant interactions and solute–water interactions. ACS Omega 9:3017-3027 (2024). DOI: 10.1021/acsomega.3c09329 (open access).
Related dataset and response to reviews in SJSU ScholarWorks.
Eggers, D.K., Brewer, A., Cacatian, K.J., Camat, L.A., Castagnoli, D., Chuang, N., Chung, L.N., Do, T., Huynh, E., Jenpichitkulchai, T., Kaur, A., Le, F., Ong, R., Pham, D., and K. Shao: Model binding experiments with cucurbit[7]uril and p-sulfonatocalix[4]arene support use of explicit solvation term in governing equation for binding equilibria. Supramol. Chem. 34:94-104 (2023). DOI: 10.1080/10610278.2023.2254442 (open access)
Related dataset and link to editorial in SJSU ScholarWorks.
Eggers, D.K., Fu, S., Ngo, D.V., Vuong, E.H., and T. Brotin: Thermodynamic contribution of water in cryptophane host–guest binding reaction. J. Phys. Chem. B 124:6585-6591 (2020). DOI: 10.1021/acs.jpcb.0c05354
Castellano, B.M., and D.K. Eggers: Experimental support for a desolvation energy term in governing equations for binding equilibria. J. Phys. Chem. B 117:8180-8188 (2013). DOI: 10.1021/jp402632a
Payumo, A.Y., Huijon, R.M., Mansfield, D.D., Belk, L.M., Bui, A.K., Knight, A.E., and D.K. Eggers: Changes in apparent molar water volume and DKP solubility yield insights on the Hofmeister effect. J. Phys. Chem. B 115:14784-14788 (2011). DOI: 10.1021/jp206486z
Eggers, D.K.: A bulk water-dependent desolvation energy model for analyzing the effects of secondary solutes on biological equilibria. Biochemistry 50:2004-2012 (2011). DOI: 10.1021/bi1017717
Eggers, D.K., and J.S. Valentine: Crowding and hydration effects on protein conformation: a study with sol-gel encapsulated proteins. J. Mol. Biol. 314:911-922 (2001). DOI: 10.1006/jmbi.2001.5166
Eggers, D.K., W.J. Welch, and W.J. Hansen: Complexes between nascent polypeptides and their molecular chaperones in the cytosol of mammalian cells. Mol. Biol. Cell 8:1559-1573 (1997). DOI: 10.1091/mbc.8.8.1559
Eggers, D.K., H.W. Blanch, and J.M. Prausnitz: Extractive catalysis: solvent effects on equilibria of enzymatic reactions in two-phase systems. Enzyme Microb. Technol. 11:84-89 (1989). DOI: 10.1016/0141-0229(89)90065-3