• X. Siebert and J. Navaza : "UROX 2.0 : An interactive tool for fitting atomic models into Electron Microscopy reconstructions" Acta Crys (2009) D65, 651-658 
  
• J. Navaza et al. : "On the fitting of model electron densities into EM reconstructions: a reciprocal-space formulation", Acta Cryst. (2002). D58, 1820-1825

• Chang et al. " Reconstructing Virus Structures from Nanometer to Near-Atomic Resolutions with Cryo-Electron Microscopy and Tomography", Advances in Experimental Medicine and Biology, Volume 726, 49-90 (2012)
• Elegheert et al., "Extracellular Complexes of the Hematopoietic Human and Mouse CSF-1 Receptor Are Driven by Common Assembly Principles", Structure 19(12) 1762-1772 (2011)
  
• Aramayo R. et al.,  "Quaternary structure of the specific p53–DNA complex reveals the mechanism of p53 mutant dominance" Nucl. Acids Res. (2011)
• O. Pilak et al " Chaperonins from an Antarctic archaeon are predominantly monomeric: crystal structure of an open state monomer", Environmental Microbiology (2011)
• M L. Baker et al. Modeling protein structure at near atomic resolutions with Gorgo, J. Struct. Biol (2011)
• W. Wriggers et al. Matching structural densities from different biophysical origins with gain and bias (2011), J. Struct. Biol. 173(3), 445-450
  
• M. Beak et al. Exploring the spatial and temporal organization of a cell's proteome, J. Struct. Biol (2011), 173(3) :483 - 496
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• M L. Baker et al. Analyses of Subnanometer Resolution Cryo-EM Density Maps, Methods in Enzymology (2010) 483: 1-29
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• Baker ML et al., Analyses of Subnanometer Resolution Cryo-EM Density Maps, Methods in Enzymology, Academic Press (2010) Volume 483, Cryo-EM, Part C: Analyses, Interpretation, and Case studies, Pages 1-29.
  

• J-K Hyun, Mazdak Radjainia, Richard L. Kingston, Alok K. Mitra, Proton-driven Assembly of the Rous Sarcoma Virus Capsid Protein Results in the Formation of Icosahedral Particles J. Biol. Chem. (2010) 285: 15056-15064.
  
• He Y, Olson R. Three-dimensional structure of the detergent-solubilized Vibrio cholerae cytolysin (VCC) heptamer by electron cryomicroscopy., J Struct Biol. (2010), 169(1):6-13. 
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• Martin D, Duarte M, Lepault J, Poncet D. Sequestration of Free Tubulin Molecules by the Viral Protein NSP2 Induces Microtubule Depolymerization during Rotavirus Infection. J.Virol (2009)
• S. Muench et al. Cryo-electron Microscopy of the Vacuolar ATPase Motor Reveals its Mechanical and Regulatory Complexity, J Mol Biol (2009), 386 (4), 989 - 999.
  
• Yongning He and Rich Olson, Three-dimensional structure of the detergent-solubilized Vibrio cholerae cytolysin (VCC) heptamer by electron cryomicroscopy, Journal of Structural Biology (2009)

• Lhuillier et al. "Structure of bacteriophage SPP1 head-to-tail connection reveals mechanism for viral DNA gating", P.N.A.S. (2009) 106 (21), 8507-8512
• Suman Lata,  et al. "Helical Structures of ESCRT-III Are Disassembled by VPS4", Science 321, 1354 (2008)
• Hui Li,  et al., "A Neoplastic Gene Fusion Mimics Trans-Splicing of RNAs in Normal Human Cells", Science 321, 1357 (2008);
  
  
• Dong-Hua Chen et al. "Location and Flexibility of the Unique C-Terminal Tail of Aquifex aeolicus Co-Chaperonin Protein 10 as Derived by Cryo-Electron Microscopy and Biophysical Techniques", J. Mol. Bio. (2008); 381 (3), 707-717
• Mazdak Radjainia, Yu Wang and Alok K. Mitra, Structural Polymorphism of Oligomeric Adiponectin Visualized by Electron Microscopy, Journal of Molecular Biology Volume 381, Issue 2, Pages 419-430 (2008)
• Libersou S.,  Siebert X., Ouldali M., Estrozi L. F., Navaza J., Charpilienne A., Garnier P.,  Poncet D. and Lepault J. ``Geometry mismatches within the concentric layers of rotavirus particles: a potential regulatory switch of the rotavirus transcription activity'', J. Virol. (2008); 82(6):2844-52 
• Gutsche I, Vujičić-Žagar A, Siebert X, Servant P, Vannier F, Castaing B, Gallet B, Heulin T, de Groot A, Sommer S, Serre L.
  

  Complex oligomeric structure of a truncated form of DdrA: A protein required for the extreme radiotolerance of Deinococcus., Biochim Biophys Acta. 2008 Apr (see also the commentary in Nanoprobes)
• Medical-Imaging-Week : news on UROX
  

Links

• NORMA (normal mode fitting)

• EM Data Bank

• Wikipedia Software tools for Electron Microscopy (including UROX)