ソフトウェア

データマイニングと機械学習

  • SFMEDM (Space-efficient feature maps for string alignment kernels)

  • SMBT (Succinct multibit tree for fast similarity searches of large-scale fingerprints)

  • gWT (Fast graph similarity search for massive graph databases)

  • SketchSort (Fast all pairs Similarity Search for cosine distance)

  • SketchSortE (Fast all pairs similarity search for Euclidean distance)

  • SketchSortJ (Fast all pairs similarity search for Jaccard-Tanimoto distance)

  • SketchSort-minmax (all pairs similarity search for minmax distance)

  • SACHICA++ (Scalable Algorithm for Characteristic/Homogeneous Interval Calculation)

  • LCM (Linear time Closed itemset Miner)

  • PrefixSpan (Frequent Sequential Pattern Miner)

データ圧縮

  • FM-index++ (c++ implementation of FM-index)

  • olca++ (c++ implementation of online grammar-based compression)

バイオインフォマティクス

  • PACHA (Pairwise Chemical Aligner)

  • SCARNA (fast and accurate structural pairwise alignment software for RNA sequences)

  • MXSCARNA (Multiple alignment software for RNA sequences)

  • SCARNA_LM (Local multiple alignment software for RNA sequences)