Publications and licences

Publications sous hal INRAE

I - PUBLICATIONS (line breaks separate different years, INRAE classification)

I.1 - Original results 

I.1.1. International journals with review

Mohamed Kefi, Nesrine Kalboussi, Alain Rapaport, Jérôme Harmand and Hakim Gabtni (2023) Model-based approach for monitoring treated wastewater Reuse strategies in water scarce regions. A case study for olive growing farms in peri-urban areas of Sousse, Tunisia, Water

Karam, F., R. Haddad, N. Amacha, W. Charanek and J. Harmand (2023) Assessment of the impacts of phyto-remediation on water quality of the Litani river by means of two wetland plants (Sparganium erectum and Phragmites australis), Water, 15, 4. https://doi.org/10.3390/w15010004

Harmand, T., J. Harmand et F. Bouin (soumise) Réutilisation des eaux usées traitées : une perspective historique de la réglementation française 

Haddon, A., A. Rapaport, S. Roux, and J. Harmand (2022) Optimisation of fertilisation with Wastewater Reuse (soumis)

Haddon, A. L. Kechichian, J. Harmand, C. Dejean, N. Ait-Mouheb  (2022) Linking soil moisture sensors and crop models for irrigation management (soumis)

Rapaport A, R. David, D. Dochain, J. Harmand and T. Nidelet (2022) Consideration of Maintenance in Wine Fermentation Modeling. Foods, 11(12):1682. https://doi.org/10.3390/foods11121682 

Ihab Haidar, Elie Desmond-Le Quéméner, Jean-Pierre Barbot, Jérôme Harmand, Alain Rapaport (2022) Modelling and optimal control of an electro-fermentation process within a batch culture. Processes, MDPI, 2022, 10, pp.535. ⟨10.3390/pr10030535⟩. ⟨hal-03593854⟩

Otacílio B.L. Neto, Antoine Haddon, Farouk Aichouche, Jerome Harmand, Michela Mulas, Francesco Corona, Predictive control of activated sludge plants to supply nitrogen for optimal crop growth (2021) IFAC-PapersOnLine, Volume 54, Issue 3, Pages 200-205, https://doi.org/10.1016/j.ifacol.2021.08.242.

Harmand, J. (2021) Growth models in microbial ecosystems: resource or density-dependence?, Ecological Engineering and Environment Protection, No. 1,  p. 60-66.

Ugalde-Salas, P., Ramirez, H., J. Harmand and E. Desmond-Le Quemener (2021) Microbial interactions as drivers of a nitrification process in a chemostat, Bioengineering, Vol. 8, No. 31, https://doi.org/10.3390/bioengineering8030031.

Chougradi, A., J.-E. Jellal, F. Zaviska, J. Harmand, A. Abed and M. Heran (2021) Batch Reverse Osmosis Desalination Modeling Under a Time-Dependent Pressure Profile, Membranes, Vol. 11, No. 173. https://doi.org/10.3390/membranes11030173.

Rapaport, A., T. Nidelet, S. El Aidaa and J. Harmand (2020) About biomass overyielding of mixed cultures in batch processes, Mathematical Biosciences.

Ouchtout, S., Z. Mghazli, J. Harmand, A. Rapaport and Z. Belhachmi (2020) Analysis of an anaerobic digestion model in landfill with mortality term, Communications in Pure and Applied Analysis, Vol. 20, No. 4, pp. 2333-2346.

Ugalde-Salas, P., E. Le Quéméner, J. Harmand,  A. Rapaport and T. Bouchez (2020) Insights from Microbial Transition State Theory on Monod’s Affinity Constant, Sci Rep 10, 5323, doi.org/10.1038/s41598-020-62213-6 . 

N. Abdellatif, W. Bouhafs, J. Harmand and F. Jean (2020) A geometrical approach for the optimal control of Sequencing Batch Bio-Reactors, Statistics, Optimization & Information Computing, https://doi.org/10.19139/soic-2310-5070-868.

Harmand, J., A. Rapaport and D. Dochain (2020) Increasing removal rate can globally stabilize two-step biological systems, Journal of Process control, Vol 95, pp. 67-74, doi.org/10.1016/j.jprocont.2020.08.009.

Barthe, M., J. Tchouanti, P. H. Gomes, C. Bideaux, D. Lestrade, C. Graham, J. P. Steyer, S. Méléard, J. Harmand, N. Gorret, M. Cocaign-Bousquet and B. Enjalbert (2020) Re-visiting diauxie: role of the molecular switch XylR in metabolic heterogeneity, Embo Report.

Graham, C., J. Harmand, S. Meleard, and J. Tchouanti (2020) Bacterial metabolic heterogeneity: from stochastic to deterministic models, Mathematical Biosciences and Engineering, Vol. 17, No. 5, pp. 5120-5133.

Abaali, M., J. Harmand and Z. Mghazli (2020) Analysis of a new mathematical model of  bio-denitrification, Processes, Vol. 8, pp. 890, doi:10.3390/pr8080890.

Hanaki, M., J. Harmand, Z. Mghazli, A. Rapaport, T. Sari and P. Ugalde (2021)  Mathematical study of a two-stage anaerobic model when the hydrolysis is the limiting step, Processes.

Harmand, J. (2019) Contribution of modeling for a better understanding of microbial ecosystems, Vol. 2, pp. 14-22, doi.org/10.32006/eeep.2019.2.1422. 

Pastor-Poquet, V., S. Papirio, J. Harmand, J.P. Steyer, E. Trably, R. Escudié and G. Esposito (2019) Assessing Practical Identifiability during Calibration and Cross-Validation of a Structured Model for High-Solids Anaerobic Digestion, Water Research, Col. 164, 10.1016/j.watres.2019.114932.

Kouas, M., M. Torrijos, P. Sousbie, J. Harmand and S. Sayadi (2019) Modeling the anaerobic co-digestion of solid waste: From batch to semi-continuous simulation, Bioresource Technology, Vol. 274, pp. 33-42, DOI: 10.1016/j.biortech.2018.11.065.

Casenave, C., M. Perez, D. Dochain, J. Harmand, A. Rapaport and J. M. Sablayrolles (2019) Anti-windup Input-Output linearization strategy for the control of a Multi-Stage Continuous Fermenter with Input constraints, IEEE Transactions on Control Systems Technology, http://dx.doi.org/10.1109/TCST.2019.2892932.

Kalboussi, N., A. Rapaport, T. Bayen, N. Ben Amar, F. Ellouze, J. Harmand (2019) Optimal control of membrane filtration systems J. IEEE Transactions on Automatic Control, Vol. 64, No. 5, pp. 2128-2134, https://doi.org/10.1109/TAC.2018.2866638.

Cerón-Vivas, A. N. Kalboussi, J. M. Morgan-Sagastume, J. Harmand and A. Noyola (2018) Model assessment of the prevailing fouling mechanisms in a submerged membrane anaerobic reactor treating low-strength wastewater, Bioresource Technology, Vol. 268, pp. 460-469, DOI: 10.1016/j.biortech.2018.08.017.

Hmissi, M., J. Harmand, V. Alcaraz-Gonzalez and H. Shayeb (2018) Evaluation of alkalinity spatial distribution in an up-flow fixed bed anaerobic digester, Water Science and Technology, Vol. 77, No. 4, pp. 948-959, DOI: 10.2166/wst.2017.612

Landa, M., S. Blain, J. Harmand, S. Monchy, A. Rapaport and I. Obernosterer (2018) Major changes in the composition of a Southern Ocean bacterial community in response to diatom-derived dissolved organic matter, FEMS Microbiology Ecology, Vol. 94, No. 4, DOI: 10.1093/femsec/fiy034

Daoud, Y., N. Abdellatif, T. Sari and J. Harmand (2018) Steady state analysis of a syntrophic model: The effect of a new input substrate concentration, Math. Model. Nat. Phenom. Vol. 7, No. 2, pp. 32-51, DOI: 10.1051/mmnp/2018037.

Khedim, Z., B. Benyahia, B. Cherki, T. Sari and J. Harmand (2018) Effect of control parameters on biogas production during the anaerobic digestion of protein-rich substrates, Applied Mathematical Modelling, Vol. 61, pp. 351-376, doi.org/10.1016/j.apm.2018.04.020

Kouas, M. , M. Torrijos, S. Schmitz, P. Sousbie, S. Sayadi and J. Harmand (2018) Co-digestion of solid waste: Towards a simple model to predict methane production, bioresource Technology, Vol. 254, pp. 40-49. DOI: 10.1016/j.biortech.2018.01.055.

Kalboussi, N., J. Harmand, A. Rapaport, T. Bayen, F. Ellouze and N. Benamar (2018) Optimal control of physical backwash strategy - towards the enhancement of membrane filtration process performance, Journal of Membrane Science, Vol. 545, pp. 38-48, DOI: 10.1016/j.memsci.2017.09.053.

A. Haddon, J. Harmand, H. Ramirez, A. Rapaport (2017) Guaranteed value strategy for the optimal control of biogas production in continuous bio-reactors, IFAC-PapersOnLine, Vol. 50, No. 1, pp. 8728-8733.

Bayen, T., J. Harmand and M. Sebbah (2017) Time-optimal control of concentrations changes in the chemostat with one single species, Applied Mathematical Modelling, Vol. 50, pp. 257–278, DOI: 10.1016/j.apm.2017.05.037.

Kouas, M., M. Torrijos, P. Sousbie, J. P. Steyer, S. Sayadi and J. Harmand (2017) Robust assessment of both biochemical methane potential and degradation kinetics of solid residues in successive batches, Waste Management, Vol. 70, pp. 59-70, DOI: 10.1016/j.wasman.2017.09.001.

Charfi, A., N. Thongmak, B. Benyahia, M. Aslam, J. Harmand, N. Ben Amar, G. Lesage, P. Sridang, J. Kim and M. Heran (2017) A modelling approach to study the fouling of an Anaerobic Membrane Bioreactor for industrial wastewater treatment, Bioresource Technology, Vol. 245, Part A, pp. 207-215, DOI: 10.1016/j.biortech.2017.08.003.

Krichen, E., J. Harmand, M. Torrijos, J. J. Godon, N. Bernet and A. Rapaport (2017) High biomass density promotes density-dependent microbial growth rate, Biochemical Engineering Journal, Vol. 130, pp. 66-75.

Mazenc, F., J. Harmand and M. Malisoff (2017) Stabilization in a Chemostat with Sampled and Delayed Measurements and Uncertain Growth Functions, Automatica, Vol. 78, pp. 241-249, DOI: 10.1016/j.automatica.2016.12.035.

Gajardo, P., J. Harmand, H. Ramirez, A. Rapaport, V. Riquelme and A. Rousseau (2017) Modeling and control of in-situ decontamination of large water resources, ESAIM: proceedings and surveys, Vol. 57, pp. 70-85 (à partir des actes étendus du colloque ETAMM 2016 - Emerging Trends in Applied Mathematics and Mechanics).

Hmissi, M., J. Harmand and H. Shayeb (2016) Hydrodynamic Model of an Anaerobic Reactor, International Journal of Computer Technology and Applications, Vol. 9, No. 38, pp. 213-221.

Dumont, M., J. J. Godon and J. Harmand (2016) Species coexistence in nitrifying chemostats : a model of microbial interactions, Processes, Vol. 4, No. 4, pp. 51; doi:10.3390/pr4040051.

Sari, T. and J. Harmand (2016) A model of a syntrophic relationship between two microbial species in a chemostat including maintenance, Mathematical Biosciences, Vol. 275, pp. 1-9, DOI: 10.1016/j.mbs.2016.02.008.

Charfi, A., Y. Yang, J. Harmand, N. Ben Amar, M. Heran and A. Grasmick (2015) Soluble Microbial Products and Suspended Solids influence in membrane fouling dynamics and interest of punctual relaxation and/or backwashing, Journal of Membrane Science, Vol. 475, pp. 156-166, DOI: 10.1016/j.memsci.2014.09.059.

Hassam, S., E. Ficara, A. Leva and J. Harmand (2015) A generic and systematic procedure to derive a simplified model from the Anaerobic Digestion Model No. 1 (ADM1), Biochemical Engineering Journal, Vol. 99, pp. 193-203

Araujo Pimentel, G., A. Vande Wouwer, J. Harmand and A. Rapaport (2015) Design, analysis and validation of a simple dynamic model of a submerged membrane bioreactor, Water Research, Vol. 70, pp. 97-108

Ghouali, A., T. Sari and J. Harmand (2015) Maximizing biogas production from the anaerobic digestion, Journal of Process Control, Vol. 36, pp. 79-86.

Bellucci, M., N. Bernet, J. J. Godon, J. Harmand and K. Milferstedt (2015) Established multispecies biofilms prevent the invasion of allochthonous species in bioreactors inoculated with tap water and activated sludge, Water Research, Vol. 81, pp. 232-239, DOI: 10.1016/j.watres.2015.05.051.

Jaillard B., A. Rapaport, J. Harmand, A. Brauman and N. Nunan (2014) Community assembly effects shape the biodiversity-ecosystem functioning, Functional Ecology, Functional Ecology, Vol. 28, pp. 1523–1533.

Charfi, C., J. Harmand, N. Ben Amar, A. Grasmick and M. Heran (2014) Deposit membrane fouling: influence of specific cake layer resistance and tangential shear stresses, Water Science and Technology, Vol 70, No 1, pp 40–46, doi:10.2166/wst.2014.186.

Bouhafs, W, N. Abdellatif, F. Jean and J. Harmand (2014) Commande optimale en temps minimal d’un procédé biologique d’épuration de l’eau, ARIMA, Vol. 18, pp. 37-51.

Fekih-Salem, R., N. Abdellatif, T. Sari and J. Harmand (2014) Analyse mathématique d’un modèle de digestion anaérobie à trois étapes, ARIMA, Vol. 17, pp. 53-71.

Rapaport, A., I. Haidar and J. Harmand (2014) Global dynamics of the buffered chemostat for a general class of response functions, Journal of Mathematical Biology, DOI 10.1007/s00285-014-0814-7.

Pulido-Villena, E., A. C. Baudoux, I. Obernosterer, M. Landa, J. Caparros, P. Catala, C. Georges, J. Harmand, and C. Guieu, Microbial food web dynamics in response to a Saharan dust event: results from a mesocosm study in the oligotrophic Mediterranean Sea, Special Issue "DUNE" in Biogeosciences, Vol. 11, No. 19, pp: 5607-5619

Fritsch, C., J. Harmand and F. Campillo (2014) A modeling approach of the chemostat, Ecological Modelling, Vol. 299, pp. 1-13.

Benyahia, B., T. Sari, B. Cherki and J. Harmand (2013) Anaerobic Membrane BioReactor modeling in the presence of Soluble Microbial Products (SMP) – the Anaerobic Model AM2b, Chemical Engineering Journal Vol. 228, pp. 2011-2022.

Fekih-Salem, R., A. Rapaport, T. Sari, C. Lobry and J. Harmand (2013), Extensions of the chemostat model with flocculation, Journal of Mathematical Analysis and Applications, Vol. 397, No. 1, pp. 292-306.

Godon, J. J., L. Arcemisbehere, R Escudié, J. Harmand, E. Miambi and J. P. Steyer (2013) Overview of the oldest existing set of substrate-optimized anaerobic processes: digestive tracts, BioEnergy Research, Vol. 6, No. 3, pp. 1063-1081

de Dreuzy, J. R., A. Rapaport, T. Babey and J. Harmand (2013) Influence of porosity structures on mixing-induced reactivity in mobile/immobile Multi-Rate Mass Transfer (MRMT) and Multiple Interacting Continua (MINC) models, Water Resources Research, Vol. 49, pp. 1–19

Benyahia, B., T. Sari, B. Cherki and J. Harmand (2012) Bifurcation and stability analysis of a two step model for monitoring anaerobic digestion processes, Journal of Process Control, Vol. 22, No. 6, pp. 1008-1019.

Sari, T., M. El Hajji, and J. Harmand (2012) : The mathematical analysis of a syntrophic relationship between two microbial species in a chemostat, Mathematical Biosciences and Engineering, Vol. 9, No. 3, pp. 627-645.

Gajardo, P., J. Harmand, C. Ramírez and A. Rapaport (2011) Minimal time bioremediation of natural water resources, Automatica Vol. 47, pp. 1764–1769

El Hajji, M., F. Mazenc and J. Harmand (2010) : A Mathematical Study of a Syntrophic Relationship of a Model of Anaerobic Digestion Process, Mathematical Biosciences and Engineering, Vol. 7, No. 3, 641–656.

Mazouni, D., J. Harmand, A. Rapaport and H. Hammouri (2010) "Optimal time control of switching systems : application to biological Sequencing Batch Reactors", Optimal Control Application and Methods, Vol. 31, No.4, pp. 289-301.

Dumont, M., J. Harmand, A. Rapaport and J. J. Godon (2009) : "Towards functional molecular fingerprints", Environmental Microbiology, Vol. 11, No. 7, pp. 1717-1727.

Hajji, M., J. Harmand, H. Chaker and C. Lobry, Association between competition and obligate mutualism in a chemostat (2009) J. Biol. Dynamics, Vol. 3, No. 6, pp. 635–647.

Mazenc, F., M. Malisoff and J. Harmand (2009) Stabilization in a Two-Species Chemostat with Monod Growth Functions, IEEE TAC, Vol. 54, No. 4, pp. 855-860.

Rapaport, A., D. Dochain and J. Harmand (2009) Long run coexistence in the chemostat with multiple species, Journal of Theoretical Biology, Vol. 257, No. 2, pp. 252-259.

Betancur M., D. Mazouni, J. Harmand and J. Moreno (2008) Optimal control of biological SBR’s for the treatment of dairy and toxic wastewater, MCMDS, Special Issue 14:1, 39 – 52 (also in the proceedings of the 5th MATHMOD VIENNA, IMACS Symposium on Mathematical Modelling, Vienna, 8-10 février 2006 and presented at the Congreso Anual de la Asociación de México de Control Automático, Del 19 al 21 de Octubre del 2005, Cuernavaca, Morelos, Mexico).

Bouvier, J.C., M. Bekri, D. Mazouni, O. Schoefs, J. Harmand, T. Ribeiro, H. Nam Pham, and A. Pauss (2008) On-Line Monitoring of Nitrate, Nitrite by UV Spectrophotometry in a SBR Process Used for The Treatment of Industrial Wastewaters?, International Journal of Chemical Reactor Engineering, Vol. 6, No. A106.

Canziani, R., E. Ficara, N. Fiocchi, P. Ratini, M. Pirani, S. Mariani, M. Bekri, A. Pauss, T. Ribeiro, O. Schoefs, , J.C. Bouvier, J. Harmand, and D. Mazouni (2008) Development of hardware sensors for the online monitoring of SBR used for the treatment of industrial wastewaters, Mathematical and Computer Modelling of Dynamical Systems, Vol. 14, No. 1, pp. 27 – 37.

Dramé, A., C. Lobry, J. Harmand, A. Rapaport and F. Mazenc (2008) Multiple stable equilibrium profiles in tubular bioreactors, Mathematical and Computer Modelling, Vol. 48, pp. 1840-1853.

Fibrianto, H., D. Mazouni, M. Ignatova, M. Herveau, J. Harmand and D. Dochain (2008) Dynamical modelling, identification and software sensors for SBRs, Mathematical and Computer Modelling of Dynamical Systems, Vol. 14, No. 1, pp. 17 – 26.

Fiocchi, N., E. Ficara, S. Bonelli, R. Canziani, F. Ciappelloni, S. Mariani, M. Pirani, P. Ratini, D. Mazouni and J. Harmand (2008) Automatic set-point titration for monitoring nitrification in SBRs, Water Science and Technology, Vol. 58, No. 2, pp. 331-336.

Mazenc, F., J. Harmand and M. Malisoff (2008) Further results on stabilization of periodic trajectories for a chemostat with two species, TAC, special issue on Systems Biology, Vol. 53, No.1, pp. 66-74.

Rapaport, A. and J. Harmand (2008) Biological Control of the chemostat with non-monotonic response and different removal rates, Mathematical Biosciences and Engineering, Vol. 5, No. 3, pp. 539-547.

Rapaport, A., J. Harmand and F. Mazenc (2008) Coexistence in the design of a series of two chemostats, Journal of Nonlinear Analysis series B : real world applications, Vol. 9, No. 3, pp. 1052-1067, 2008.

Rapaport, A., D. Dochain and J. Harmand (2008) Practical coexistence in the chemostat with arbitrarily close growth functions. ARIMA, Spécial issue edited by Claude Lobry, Vol. 9, pp. 231-243

Ratini, P., M. Pirani, S. Mariani, A. Quintabà, L. Luccarini, D. Mazouni, N. Fiocchi and J. Harmand (2008) Development of an integrated system for the optimization of sequencing batch reactors, Mathematical and Computer Modelling of Dynamical Systems, Vol. 14, No. 1, pp. 67 – 78

Haegeman, B., C. Lobry and J. Harmand (2007) Modeling bacteria flocculation as density-dependent growth, AIChE Journal, Volume 53, No. 2, pp. 535-539.

Harmand, J. and J. J. Godon (2007) Density-dependent kinetics models for a simple description of complex phenomena in macroscopic mass-balance modeling of bioreactors, Ecological Modelling, Vol. 200, No. 3-4, pp. 393-402.

Lobry, C. and J. Harmand (2006) A new hypothesis to explain the coexistence of N species in the presence of a single resource, CRAS série Biologie, Vol. 329, pp. 40-46.

Loisel, P., J. Harmand, O. Zemb, E. Latrille, C. Lobry, J. P Delgenes and J. J. Godon (2006) DGE and SSCP molecular fingerprintings revisited by simulation and used as a tool to measure microbial diversity, Environmental Microbiology, Vol. 8, No. 4, pp. 720-731.

Harmand, J., L. Paulou, J. Desmoutiers, L. Garrelly, P. Dabert and J. J. Godon (2006) The microbial signature of potable waters : myth or reality?, Water Science and Technology, Vol. 53, No. 1, pp. 259-266 (également dans les actes de 6th International Symposium on Systems Analysis and Integration assessment, WATERMATEX 2004, November 3-5, 2004, Beijing, China).

Ciappelloni, F., D. Mazouni, J. Harmand and L. Lardon (2006) On-line supervision and control of an aerobic SBR process, Water Science and Technology, Vol. 53, No. 1, pp. 169-177 (également dans les actes de 6th International Symposium on Systems Analysis and Integration assessment, WATERMATEX 2004, November 3-5, 2004, Beijing, China).

Harmand, J., A. Rapaport and F. Mazenc (2006) Output tracking of continuous bioreactors through recirculation and by-pass, Automatica, Vol. 42, No. 6, pp. 1025-1032.

Harmand, J., C. Lobry, A. Rapaport and J. J. Godon (2006) La modélisation des écosystèmes microbiens : une nécessité pour la recherche et l'industrie, Biofutur, No. 268, pp. 54-57.

Dramé, A., J. Harmand, C. Lobry and A. Rapaport (2006) Multiple steady state profiles in interconnected biological systems and some convergence results, Mathematical and Computer Modelling of Dynamical Systems, Vol. 12, No. 5, pp. 379-393 (également dans les actes de 4th Mathmod Conference, 5-7 February 2003, Vienna, Austria).

Harmand, J. and D. Dochain (2005) Conception optimale de deux réacteurs endothermiques interconnectés, Récents Progrès en Génie des Procédés, No. 92 (également dans les actes du 10ème Congrès de la SFGP, 20-22 septembre 2005, Toulouse, France).

Harmand, J. et D. Dochain (2005) Towards a unified approach for the design of interconnected catalytic and auto-catalytic reactors, Computers and Chemical Engineering, Vol. 30, pp. 70-82.

Alcaraz-González V., J. Harmand, A. Rapaport, J. P. Steyer, V. González-Alvarez and C. Pelayo-Ortiz (2005) Application of a Robust Interval Observer to an Anaerobic Digestion Process, Developments in Chemical Engineering and Mineral Processing, Vol. 13, No. 3-4.

Alcaraz-González, V., J. Harmand, A. Rapaport, J. P. Steyer, V. Gonzalez-Alvarez and C. Pelayo-Ortiz (2005) Robust Interval-Based Siso Regulation In Anaerobic Digestion, Water Science and Technology, Vol. 52, No. 1-2, pp. 449-456, (également dans les actes de AD10, 10th World Congress on Anaerobic Digestion, August, 29th-September 2nd 2004, Montreal, Canada, Vol. I, pp. 337-342).

Zarrad, W., J. Harmand, M. Devisscher and J. P. Steyer (2004) Comparison of two advanced control strategies for monitoring the activated sludge processes, Control Engineering Practice, Vol. 12, No. 3, pp. 323-333 (également dans les actes de b'02 IFAC World Congress, 21-26 juillet, Barcelone, Espagne).

Harmand, J., A. Rapaport and A. Dramé (2004) Optimal design of 2 interconnected enzymatic reactors, Journal of Process Control, Vol. 14, No. 7, pp. 785-794 (également dans les actes de 9th International Symposium on Computer Applications in Biotechnology (CAB9), 28-31 mars 2004, Nancy, France).

Harmand, J., A. Rapaport and A. Trofino (2003) Optimal design of interconnected bioreactors : new results, AIChE Journal, Vol. 49, No. 6; pp. 1433-1450 (également dans les actes de CCA'02, Lisbon, Portugal, 8-12 Juillet 2002).

Antonelli, R., J. Harmand, J. P. Steyer and A. Astolfi (2003) Set point regulation of an anaerobic digestion process with bounded output feedback, IEEE Transactions on Control Systems Technology, (IEEE-TCST), Vol. 11, No. 4, pp. 495-504.

Theilliol, D. , J.C. Ponsart, J. Harmand, C. Join and P. Gras (2003) On line estimation of unmeasured inputs for anaerobic processes, Control Engineering Practice, Vol. 11, No. 9, pp. 1007-1019.

Harmand, J. and I. Queinnec (2003) Commande H2 par retour de sortie d'un procédé cascade de production d'acides gras volatils, e-STA, Vol. 1, accessible en-ligne à http://www.e-sta.see.asso.fr/ (également dans les actes de Conférence Internationale Francophone d'Automatique, Nantes, France, 8-10 Juillet 2002).

Harmand, J., F. Miens, T. Conte, P. Gras, P. Buffière and J. P. Steyer (2002) Model-based prediction of the clogging of an anaerobic fixed bed reactor, Water Science and Technology, Vol. 45, No. 4-5, pp. 255-262 (également dans les actes de 1st IWA Conference on Instrumentation, Control and Automation, ICA2001, pp. 365-372, June 3-7, Malmö, Sueden).

Rapaport, A. and J. Harmand (2002) Robust regulation of a class of partially observed nonlinear continuous bioreactors, Journal of Process Control, Vol. 12, No. 2, pp. 291-302.

Steyer, J. P., J. C. Bouvier, T. Conte, P. Gras, J. Harmand and J. P. Delgenes (2002) On-line measurements of COD, TOC, VFA, total and partial alkalinity in anaerobic digestion processes using infra-red spectrometry, Water Science and Technology, Vol. 45, No. 10, pp. 133 – 138 (également dans les actes de 9th World Congress on Anaerobic Digestion, held in Antwerp, Belgium, 2-6 September 2001).

Harmand, J. and J.P. Steyer (2002) Placement optimal des capteurs et actionneurs d'un bioprocédé, Déchets, Sciences et Techniques, Vol. 26, pp. 20-26 (également dans les actes de Colloque Automatique et Environnement, July 4-6 2001, Saint Etienne, France).

Alcaraz-Gonzalez, V., J. Harmand, A. Rapaport, J. P. Steyer, V. Gonzalez Alvarez and C. Pelayo Ortiz (2002) Software sensors for highly uncertain WWTPs: a new approach based on interval observers, Water Research, Vol. 36, pp. 2515-2524.

Aubrun, C., D. Theilliol, J. Harmand and J. P. Steyer (2001). Software sensor design for COD estimation in an anaerobic fluidized bed reactor, Water Science and Technology, Vol. 43, No. 7, pp. 115-122 (également dans les actes de 5th IWA International Symposium on Systems Analysis and Computing in Water Quality Management, Gent, Belgium, 18-20 September 2000).

Steyer, J. P., A. Genovesi and J. Harmand (2001) Advanced monitoring and control of anaerobic wastewater treatment plants: fault detection and isolation, Water Science and Technology, Vol. 43, No. 7, pp183-190 (également dans les actes de 5th IWA International Symposium on Systems Analysis and Computing in Water Quality Management, Gent, Belgium, 18-20 September 2000, (poster)).

Lennox, J. A., Z. Yuan and J. Harmand (2001) A systematic approach to error isolation in computerized wastewater simulation models, Water Science and Technology, Vol. 43, No. 7, pp. 367-376 (également dans les actes de 5th IWA International Symposium on Systems Analysis and Computing in Water Quality Management, Gent, Belgium, 18-20 September 2000).

Aubrun, C., J. Harmand, O. Garnier and J. P. Steyer (2000) Fault Detection Filter Design for an Anaerobic Digestion Process, Bioprocess Engineering, Vol. 22, No. 5, pp.413-420.

Genovesi, A., J. Harmand and J. P. Steyer (2000) Integrated Fault Detection and Isolation: Application to a Winery's Wastewater Treatment Plant, Applied Intelligence, Vol. 13, pp. 59-76.

Hilgert, N., J. Harmand, J. P. Steyer and J. P. Vila (2000) Nonparametric Identification and Adaptive Control of a Fluidized Bed Anaerobic Digester, Control Engineering Practice, Vol. 8, pp.367-376.

Harmand, J., A. G. Manh and J. P. Steyer (2000) Identification and Disturbance Accommodating Control of a Fluidized Bed Reactor", Bioprocess Engineering, Vol. 23, No. 2, 177-185.

Genovesi, A., J. Harmand and J. P. Steyer (1999) A fuzzy logic based diagnosis system for the on-line supervision of an anaerobic digestor pilot-plant, Biochemical Engineering Journal, Vol.3, pp. 171-183.

Queinnec, I., J. Harmand, J. P. Steyer and N. Bernet (1998) Mathematical analysis of a nitrification process, Recent Research Developments in Fermentation & Bioengineering, Vol. 1, Part II, pp.153-163.

Queinnec, I., J. Harmand and J. P. Steyer (1996) Commande robuste d'un procédé de nitrification : approches H2 et LQ, Récents Progrès en Génie des Procédés, Vol. 10, No. 49, 229-234.

Harmand, J., J. P. Steyer, M. Amouroux, N. Bernet and R. Moletta (1995) Commande Robuste de Procédés Biotechnologiques de Dépollution : vers une Solution au Problème de la Variabilité de la Charge Polluante, Récents Progrès en Génie des Procédés, Vol. 9, N. 44, pp. 151-156, 1995.

I.1.2. Dans périodique sans comité de lecture

Ait-Mouheb, N et J. Harmand (2021) Recyclage des eaux usées pour l’agriculture et la viticulture - Ressources en eaux disponibles ? Article éditorial, Revue des oenologues.

I.1.3. Rapports diplômants (D.E.A., thèse...) 

Harmand, J. (2004) Contribution à l'analyse et au contrôle des systèmes biologiques : application aux bioprocédés de dépollution, Habilitation à Diriger desRecherches, Université Claude Bernard - Lyon I, soutenue le 14/06/2004.

Harmand, J. (1997) Identification et commande des procédés biologiques de dépollution, Thèse de l’Univ. de Perpignan, 18/09/1997, Mention très honorable avec félicitations du jury, pour moitié réalisée au SSCL, Purdue University, IN, USA.

I.1.4. Communications courtes dans congrès, symposiums (préciser le support écrit : poster, résumé ou texte intégral)

Dadjo, M.G., D. Efimov, J. Harmand, A. Rapaport, R. Ushirobira (2023) An adaptive observer for time-varying nonlinear systems - application to a crop irrigation model, CDC2023, December 13-15, 2023, Marina Bay Sands, Singapore.

Oumaima Laraj, Noha El Khattabi, Alain Rapaport and Jérôme Harmand (2023) Mathematical model of anaerobic digestion with hydrolytic process by means of leachate recirculation in landfills, International Conference of Numerical Analysis and Optimization Days (JANO’14), February 20-22, 2023, Mines School of Rabat, Morocco. 

J. Harmand, F. Aichouche, F. Corona, A. Haddon, M. Mulas, et al.. (2023) Contribution of modeling and control for improving nutrient recycling via reuse. 13th IWA International Conference on Water Reclamation and Reuse - Water Reuse : Overcoming the Challenges of Growth and Climate Change, IWA, Jan 2023, CHENNAI, India. <hal-03932392>.

Thomas Harmand, Jérôme Harmand, Bouin Frédéric (2022) La réutilisation des eaux usées en droit interne et européen : regards croisés juridico-technologiques. SEMINAIRE SHS : EAU & DROITS « Aspects sociologiques, juridiques, démographiques et historiques des questions de l’eau », Apr 2022, Chatou, France. ⟨hal-03604272⟩.

Jérome Harmand, Nahla Abdellatif, Nihel Ben Amar, Zoubida Mghazli, Boumediene Benyahia, et al.. (2022) DIGITAL SCIENCES FOR BIOECONOMY OF WASTES, WATER AND NUTRIENTS. 4ème Congrès International sur les Energies Renouvelables et le Développement Durable, Mars 2022, Hammamet, Tunisia. ⟨hal-03609709⟩.

Dali-Youcef, M., J. Harmand, A. Rapaport, T. Sari (2022) Some non-intuitive properties of serial chemostats with and without mortality, MATHMOD 2022, Vienna, Austria, 27-29 July 2022. 

Dupeuble, Florian, Alain Rapaport, Thomas Guilmeau, Josué Tchouanti, Brice Enjalbert, Carine Bideaux, Jean Philippe Steyer, Aida Feddaoui, Jérôme Harmand (2022) Deterministic models to decipher the lag phase duration during diauxie, MATHMOD 2022, Vienna, Austria, 27-29 July 2022.

Ait-Mouheb, N., S. Bouarfa,  A.-L. Collard, C. Guigui, J. Labille, R. Lombard-Latune, J.-D. Mathias, B. Molle, P. Molle, J. Nivala, D. Patureau, A. Rapaport, N. Roche, M. Sperandio, S. Tomas, J. Harmand (2022) Les enjeux du Génie des Procédés pour la réutilisation des eaux usées traitées au sein du réseau REUSE d'INRAE – de la nécessité d'une approche pluridisciplinaire et multi-échelles, Congrés de la SFGP, 7-10 novembre, Toulouse.

Heran, M., W. Dai, G.  Lesage, J. Harmand (2022) Comment orienter les procédés pour offrir de la flexibilité dans nos unités de traitement pour valoriser au mieux les nutriments Congrés de la SFGP, 7-10 novembre, Toulouse.

Neto, O.B.L.,  A. Haddon,  F. Aichouche, J. Harmand, M. Mulas and  F. Corona (2021) Predictive control of activated sludge plants to supply nitrogen for optimal crop growth, ADCHEM21, Venezia, 13-16 June.

Haddon, A., A. Rapaport, S. Roux and J. Harmand (2021) Optimal Control of Irrigation and Fertigation for Wastewater Reuse with a Double Modelling Method, CDC2021, 13-15 December 2021, Austin, United States.

A. Haddon, A. Rapaport, S. Roux, J. Harmand (2021) Multi-objective Dynamic Optimization of Crops Irrigated with Reused Treated Wastewater. SIMS EUROSIM 2021 conference on Modelling and

Simulation.

Antoine Haddon, Victor Alcaraz-Gonzalez, Maha Hmissi, Jérôme Harmand and Antoine Rousseau (2020) Simulation of spatially distributed intensive biological systems, ECC2020, May 12-15, 2020, Sant Petersburg, Russia.

Farouk Aichouche, Nesrine Kalboussi, Alain Rapaport and Jérôme Harmand (2020) Modeling and optimal control for production-regeneration systems - preliminary results, ECC2020, May 12-15, 2020, Sant Petersburg, Russia.

Pablo Ugalde-Salas , Jérôme Harmand, and Elie Le Quéméner (2020) Modelling Interactions of a Microbial Community through an Optimal Tracking Control Approach, ECC2020, May 12-15, 2020, Sant Petersburg, Russia.

Farouk Aichouche, Boumediène Benyahia, Marc Héran and Jérôme Harmand (2020) Flexibility of Waste Resource Recovery Facilities for water Reuse, ECC2020, May 12-15, 2020, Sant Petersburg, Russia.

Karam, F. A. Mouneimne, F. Aichouche, A. Rapaport and J. Harmand (2019) Processing Soil Water Content Measurements to Estimate Crop Water - Requirements and Optimization of Irrigation Supply, CMWRS19, 20-21 September, Delft, the Netherlands.

Ugalde-Salas, P., J. Harmand, E. Lequemener (2019) Asymptotic Observers and Integer Programming for Functional Classification of a Microbial Community in a Chemostat, European Control Conference 2019 (ECC’19), 23-27 June, Napoli, Italy.

Kalboussi, N., F. Aichouche and J. Harmand (2019) Optimal control of membrane-filtration systems with constant permeat, Watermatex 2019, 1-4 September, Copenhagen, Denmark.

Harmand, J., A. Rapaport, T. Nidelet, 2019, About overyielding with mixed cultures in batch processes, FOSBE, 15-18 October, Valencia, Spain.

Kalboussi N., S. Roux, B. Cheviron, J. Harmand, A. Rapaport and C. Sinfort (2018) Apport de la modélisation pour l’aide à la décision en vue de la réutilisation agricole des eaux usées traitées, Colloque International Eau–Environnement-Climat’2018 (STEE’2018), Ressources en Eau, Environnement et Changement Climatique : Sciences de l’Eau du Climat et de l’Environnement, 22 au 24 octobre 2018, Hammamet (Tunisie).

Ugalde, P., J. Harmand, and E. D. Le Quemener (2018) Microbial interactions in a two step nitrification process: Modeling, stability analysis, and application, Bridging theory and practice in ecological engineering, Narbonne, France, 25-26 juin 2018.

Kalboussi, N., A. Rapaport, T. Bayen, N. Benamar, F. Ellouze and J. Harmand (2017) Optimal control of a membrane filtration system, IFAC, 11-14 juillet, Toulouse, France.

Kalboussi, N., J. Harmand, F. Ellouze and N. Ben Amar (2017) Optimal scheduling and fouling control in membrane bioreactor, 21-24 May, Palermo, Italy.

Khedim, Z., B. Benyahia and J. Harmand (2017) Contribution of modeling in the understanding of the Anaerobic Digestion: Application to the digestion of protein-rich substrates 21-24 May, Palermo, Italy, FRONTIERS IN WASTEWATER TREATMENT AND MODELLING, FICWTM 2017, Edited by:Mannina, G., Book Series: Lecture Notes in Civil Engineering, Volume: 4, Pages: 253-259, DOI: 10.1007/978-3-319-58421-8_40.

Kouas, M., J. Harmand, S. Sayadi, P. Sousbie and M. Torrijos (2017) Codigestion: Prediction of methane production in continuous mode using kinetic data acquired in batch mode, AD15, 17-20 October, Beijing, China.

Hmissi, M., V. Alcaraz-Gonzalez, J. Harmand and H. Shayeb (2017) Spatial Alkalinities Distribution in a Continuous Up-Flow Fixed Bed Anaerobic Digester for the Treatment of Tequila Vinasses, 5th IWA Mexico - YWP Conference 2017

Núñez, L., W. Ipanaqué, J. P. Steyer and J. Harmand (2017) Adaptive Feedback Linearizing Control of the Anaerobic Digestion Process, ICA2017, 11-14 juin 2017, Québec, Canada.

Kalboussi, N., J. Harmand, F. Ellouze and N. Ben Amar (2017) Optimization of membrane filtration systems, ICCAD, Hammamet, Tunisie, 19-21 janvier 2017

Khedim, Z. and J. Harmand (2017) Reduction of a complex biotechnological process model using state-variable association method – Application to the anaerobic digestion of micro-algae (2017) ICCAD, Hammamet, Tunisie, 19-21 janvier 2017

Khedim, Z., B. Benyahia, B. Cherki, J. Harmand (2017) Apport de la simulation numérique en biotechnologie – Application à la digestion anaérobie, Guardia, Algeria.

Haddon, A., J. Harmand, H. Ramirez and A. Rapaport (2017) Guaranteed value strategy for the optimal control of biogas production in continuous bio-reactors, IFAC, Toulouse.

Hmissi, M. and J. Harmand (2016) 4ème Conférence Internationale des Energies Renouvelables, 20-22 décembre, Hammamet, Tunisie.

Daoud, Y., N. Abdellatif, J. Harmand and T. Sari (2016), Steady-state analysis of a syntrophic association of two species in a chemostat : The effect of a new input concentration substrate, 4th International Conference on Complex Dynamical Systems in Life Sciences: Modeling and Analysis (4thICCDS’2016), Agadir, Morocco, 26-28 October 2016.

Mazenc, F., J. Harmand and M. Malisoff (2016) Stabilization in a Chemostat with Sampled and Delayed Measurements, 2016 American Control Conference, Boston, USA, July 6-8, 2016.

Kalboussi, N. J. Harmand, N. Ben Amar and F. Ellouze (2016) A comparative study of three membrane fouling models - Towards a generic model for optimization purposes, CARI’2016, 10-16 octobre 2016, Tunis, Tunisie

Benyahia, B., A. Charfi, J. Harmand, N. Ben Amar and B. Cherki (2016) Mathematical modeling of fouling membrane in an anaerobic membrane bioreactor, CARI’2016, 10-16 octobre 2016, Tunis, Tunisie

Harmand, J. (2016) Modélisation et contrôle des systèmes avancés de traitement pour la réutilisation des eaux usées en agriculture, CARI’2016, 10-16 octobre 2016, Tunis, Tunisie (conférence invitée sans actes).

Rapaport, A. and J. Harmand (2016), Overyielding in Microbial Ecosystems: What can we Learn from Modeling?, 4th French-Chilean workshop on Bioprocess Modeling, Santiago de Chile, 20-22 September 2016.

Jimenez, J., E. Latrille, J. Harmand, A. Robles, J. Ferer, D. Gaida, C. Wolf, F. Mairet, O. Bernard, V. Alcaraz-Gonzalez, H. Mendez-Acosta, D. Zitomer, D. Totzke, H. Spanjers, F. Jacobi, A. Guwy, R. Dinsdale, G. Premier, S. Mazhegrane, G. Ruiz-Filippi, A. Seco, T. Ribeiro, A. Pauss and J. P. Steyer, (2015) Instrumentation and control of anaerobic digestion processes: A review and some research challenges, IWA International Conference on Anaerobic Digestion, 13-16 November, Valparaiso, Chile.

Daoud, Y., N. Abdellatif and J. Harmand (2015) Analyse mathématique de modèles de digestion anaérobie avec phase d’hydrolyse, TAMTAM’15, Proceedings of the 7th conference on Trends in Applied Mathematics in Tunisia, Algeria, Morocco, Tanger, May 4-8, 2015.

Kouas, M., C. Charnier, J. Harmand, S. Sayadi, P. Sousbie, J. P. Steyer and M. Torrijos (2015) Kinetic modelling of anaerobic digestion with new fractionation using simple model and ADM1, IWA International Conference on Anaerobic Digestion, 13-16 November, Valparaiso, Chile.

Khedim, Z., S. Hassam, J. Harmand and B. Benyahia (2015) Anaerobic digestion models for control purposes: a short survey, IWA International Conference on Anaerobic Digestion, 13-16 November, Valparaiso, Chile.

Harmand, J. and T. Sari (2015) On the use of generic mathematical tools to study the properties of anaerobic digestion processes, IWA International Conference on Anaerobic Digestion, 13-16 November, Valparaiso, Chile.

Bayen, T. and J. Harmand (2014) Minimal time problem for a chemostat model with growth rate of Haldane type, ECC2014, June 24-27, Strasbourg, France.

Cazenave, C., D. Dochain, J. Harmand, M. Perez, A. Rapaport and J. M. Sablayrolles, 2014 Control of a Multi-Stage Continuous Fermentor for the study of the wine fermentation, IFAC World Congress, , 24-29 August, Cape Town, South Africa.

Harmand, J. (2014) Controle de paramètres dans un chemostat, Colloque National d’assimilation de données, Toulouse, 1-3 décembre 2014.

Daoud, Y., N. Abdellatif and J. Harmand (2014) Optimal control of a biological Sequencing Batch Reactor: an approach by simulations, MED2014, June 16-19 2014, Palermo, Italy.

Araujo Pimentel, G., A. Vande Wouwer, A. Rapaport and J. Harmand (2013) Modeling of submerged membrane bioreactors with a view to control, IWA ICA2013, September 18-20, Narbonne, France.

Bouhafs, W., N. Abdellatif, F. Jean and J. Harmand (2013) Commande optimale en temps minimal d’un procédé biologique d’épuration de l’eau, Proceedings of the International Joint Conference CB-WR-MED Conference/ 2nd AOP’ Tunisia Conference for Sustainable Water Management. Tunis: April, 24–27, pp. 225-226.

Charfi, A., M. Heran, J. Harmand, N. Ben Amar and A. Grasmick (2013) Membrane fouling models for Membrane BioReactors (MBR), 7th IWA Specialised Conference and Exhibition on Membrane Technology in Water and Wastewater Treatment, 25-29 August, Toronto, Canada.

Fekih-Salem, R., N. Abdellatif, T. Sari and J. Harmand (2013) Qualitative properties of 3-step model of anaerobic digestion including hydrolysis of particulate matter. Proceedings of the International Joint Conference CB-WR-MED Conference/ 2nd AOP’ Tunisia Conference for Sustainable Water Management. Tunis: April, 24–27, pages 93-94.

Harmand, J. and F. Mazenc (2013) Stabilization of the chemostat with delayed sampled measurements, SIAM Conference on Control and Its Applications, 8-10 July, San Diego, United States.

Mazenc, F., J. Harmand and H. Mounier (2013) Stabilization of the chemostat with delayed sampled measurements, NOLCOS 2013, September 4-6, Toulouse, France.

Rapaport, A., I. Haidar and J. Harmand (2013) Global stability of chemostat under growth inhibition with a buffer interconnection, NOLCOS 2013, September 4-6, Toulouse, France.

Rodriguez, C. E. R., E. Latrille, J. Harmand, V. Alcaraz González, V. González Álvarez and J. P. Steyer (2013) A switching control strategy based on alkalinity to optimize biogas outflow in the startup of an anaerobic digester, IWA ICA2013, September 18-20, Narbonne, France.

Torrijos, M., P. Sousbie, J. Harmand and J.P. Steyer (2013) Measurement of Methane Yield and Degradation Kinetics of Particulate Substrates in Batch Reactor. Protocol for the Characterization of Particulate Substrates in Batch Reactors for Design and Modelling Purposes, AD13, June, Santiago de Compostella, Spain.

Charfi, A., N. Benamar and J. Harmand (2013) Fouling in Anaerobic Membrane BioReactors, International workshop on modeling membrane bioreactors for wastewater reuse: fundamental design and operation, 12-14 November, Tunis, Tunisia.

Charfi, A., J. Harmand, N. Ben Amar, A. Grasmick and M. Heran, (2013) Fouling models for Membrane BioReactors (MBR), Membranes for liquid separation and water treatment: Environmental Applications and Future Perspectives, October 10-11, Torino, Italy.

W. Bouhafs, N. Abdellatif, F. Jean and J. Harmand (2013) A geometrical approach for the resolution of an optimal control problem. International Conference on Advances in Applied Mathematics ICAAM-2013, 16-19 December, Hammamet, Tunisia.

Benyahia, B., B. Cherki, T. Sari and J. Harmand (2012) Quelques résultats sur l’observation du modèle AM2b, CARI2012, October, 13-16 2012, Algiers, Algeria.

Benyahia, B., F. Campillo, M. Joannides, B. Cherki and J. Harmand (2012) Particle filtering for anaerobic bioprocesses, MED2012, Barcelona, Spain, July 3-6 2012.

Bouhafs, W., N. Abdellatif, F. Jean and J. Harmand (2012) Commande optimale en temps et en énergie d’un procédé biologique d’épuration d’eau, CARI2012, October, 13-16 2012, Algiers, Algeria.

Charfi, A., N. Benamar and J. Harmand (2012) Modeling membrane bioreactor fooling, 14th Aachener Membran Kolloquium 7-8 November, Aachen, Germany.

Fekih-Salem, R., N. Abdellatif, T. Sari and J. Harmand (2012) On a Three Step Model of Anaerobic Digestion Including the Hydrolysis of Particulate Matter, MATHMOD, 5-7 February, Vienna, Austria.

Fekih-Salem, R., N. Abdellatif, T. Sari and J. Harmand (2012) Analyse mathématique d'un modèle de digestion anaérobie à trois étapes, CARI2012, 13-16 October, Algiers, Algeria.

Ghouali, A., J. Harmand, A. Rapaport, A. Moussaoui, B. Cherki and T. Sari (2012) Contrôle optimal d’un bioréacteur de dépollution des eaux usées, CARI2012, 13-16 October, Algiers, Algeria.

Hassam, S., B. Cherki, E. Ficara and J. Harmand (2012) Model reduction and control of the ADM1 : a robust control approach, MED2012, 3-6 July, Barcelona, Spain.

Bello Rivas, J. M., J. Harmand, B. Ivorra, A. M. Ramos and A. Rapaport (2011) Bio reactor shape optimization Modeling, simulation, and shape optimization of a simple bioreactor for water treatment, Les STIC pour l’environnement 2011, 125–130, Presses des MINES.

Benyahia, B., T. Sari, B. Cherki and J. Harmand (2011) Modeling of the Soluble Microbial Products (SMP) in Anaerobic Membrane BioReactors (AMBR): Equilibria and stability of the AM2b model, IFAC 2011, August 28-September 2, Milano, Italy.

Charfi, A., N. Ben Amar and J. Harmand (2011) Etude du mécanisme de colmatage dans un Bioréacteur anaérobie à membrane, Colloque international 2011 « La gestion de l’eau, défit du  21ème siècle », Limoges, France 

Hassam, S., B. Cherki, E. Ficara and J. Harmand (2011) Towards a systematic approach to reduce complex bioprocess models for control design - Application to the Anaerobic Digestion Models No.1 (ADM1), SIAM Conference on Control and its application (CT11), July 25-27, 2011, Baltimore, Maryland, USA.

Ivorra, B., J. M. Bello, A. M. Ramos, J. Harmand and A. Rapaport, (2011) A Multi-Layers Method to Improve Optimization Algorithms. Application to the Design of Dispersive Bioreactors for Water Treatment, Septièmes Journées Franco-Chiliennes d’Optimisation, Perpignan, December 1st.

Rousseau, A., J. Harmand and A. Rapaport (2011) Accounting for spatial inhomogeneity in the minimal-time bioremediation of natural water resources, Septièmes Journées Franco-Chiliennes d’Optimisation, Perpignan, December 1st.

Benyahia, B., T. Sari, B. Cherki and J. Harmand (2010) Equilibria of an anaerobic wastewater treatment process and their stability, Computer Applications in Biotechnology, 7-9 July, Louvain, Belgium.

Benyahia, B., T. Sari, B. Cherki and J. Harmand (2010) Sur le modèle AMOCO de digestion anaérobie, CARI, 18-21 octobre 2010, Yamoussoukro, Côte d'Ivoire.

El Hajji, M., L. Ranjard, A. Rapaport, P. A. Maron and J. Harmand (2010) How optical density measurements on artificially reconstituted soil ecosystems show the validity of the competitive exclusion principle. Conférence Internationale de la SFBT, 17-19 June, Tunis (TUN).

Rapaport, A., J. Harmand, and J. J. Godon (2010) Comment la diversité permet une coexistence pratique d'espèces en compétition sur un substrat en accord avec le principe d'exclusion compétitive ? In Ecologie 2010, Montpellier, 2010.

Saddoud, A., T. Sari, A. Rapaport, R. Lortie, J. Harmand and E. Dubreuc (2010) A mathematical study of an enzymatic reaction in non homogeneous reactors with substrate and product inhibition: application to cellobiose hydrolysis in a bioreactor with a dead-zone, Computer Applications in Biotechnology, 7-9 July, Louvain, Belgium.

Gajardo, P, J. Harmand, H. Ramirez and A. Rapaport (2009) About biological treatment of water resources in minimal time, Stic et Environnement, Calais, France.

Harmand, J., A. Rapaport, D. Dochain, and J. J. Godon (2009) Observers for the assignation of species to functional groups in the anaerobic digestion, MATHMOD 2009, 10-13 February, Vienna, Austria.

Rapaport, A., D. Dochain, J. Harmand and G. Acuna (2008) Unknown input observers for biological processes, IFAC 2008, Seoul, South Korea.

Dumont, M., A. Rapaport, J. Harmand, B. Benyahia and J. J. Godon (2008) Observers for Microbial Ecology - How Including Molecular Data into Bioprocess Modeling?, 16th Mediterranean Conference on Control and Automation, pp. 1381-1386, June 25-27, Congress Centre, Ajaccio, Corsica, France.

Harmand, J., D. Dochain and A. Rapaport (2008) Observers for the Estimation of functional groups of the Anaerobic Digestion, IWA, Latin America Conference on Anaerobic Digestion, Iles de Pâques, Chile.

Thanikal, J. V., M. Torrijos, J. Harmand, E. Latrille, and J. P. Delgenès (2008) Characterization of the flocs from SBRs treating effluent from small cheese making plants and impact on compressibility and settleability. SBR4 - 4th IWA Specialised Conference on Sequencing Batch Reactor Technology. Platform Presentations, Rome, Italy, 7-10 April. 433-440.

Mazenc, F., J. Harmand and M. Malisoff (2007) Stabilization of a Periodic Trajectory for a Chemostat with Two Species, ACC2007, July 11-13, 2007, New York City, USA.

Mazenc, F, M. Malisoff and J. Harmand (2007) Stabilization and Robustness Analysis for a Chemostat Model with Two Species and Monod Growth Rates via a Lyapunov Approach, 46th IEEE Conference on Decision and Control, December 12-14, New Orleans, Louisiana, USA.

Dumont, M., J. Harmand, A. Rapaport and J.J. Godon (2007) De la modélisation des écosystèmes microbiens. Entre hypothèses simples etréalités complexes, Congrès annuel de l'Association Francophone d'Ecologie Microbienne, 15-18 octobre 2007, La Grande Motte, France.

Harmand, J., C. Lobry and J. J. Godon (2007) Ecosystèmes microbiens - Entre hypothèses simples et réalités complexes : l'interface des fingerprints, Congrès National de la SFM, 30 mai-1er juin, Nantes.

Rapaport, A., J. Harmand, C. Lobry, F. Mazenc, B. Haegeman and D. Dochain (2007) Microbial ecology and bioprocess control: opportunities and challenges, in Computer Applications in Biotechnology, 10th CAB, Cancun, Mexico, June 4-6 2007.

Bouvier, J. C., M. Bekri, D. Mazouni, O. Schoefs, J. Harmand, T. Ribeiro and A. Pauss (2007) On-line monitoring of nitrate, nitrite and soluble COD by UV spectrometry in a SBR process used for the treatment of industrial wastewaters, Congrès Français de Génie des Procédés, 11ème congrès de la Société Française de Génie des Procédés, 9-11 octobre, Saint Etienne, France.

Fibrianto H., D. Mazouni, M. Ignatova, M. Herveau, J. Harmand and D. Dochain (2006) Dynamical modelling, identification and software sensors for SBR’s, 5th MATHMOD VIENNA, IMACS Symposium on Mathematical Modelling, Vienna, 8-10 février 2006 (also presented at the Congreso Anual de la Asociación de México de Control Automático, Del 19 al 21 de Octubre del 2005, Cuernavaca, Morelos, Mexico).

Betancur M., D. Mazouni, J. Harmand and J. Moreno (2006) Optimal control of biological SBR’s for the treatment of dairy and toxic wastewater, 5th MATHMOD VIENNA, IMACS Symposium on Mathematical Modelling, Vienna, 8-10 février 2006 (also presented at the Congreso Anual de la Asociación de México de Control Automático, Del 19 al 21 de Octubre del 2005, Cuernavaca, Morelos, Mexico).

Canziani, R., E. Ficara, N. Fiocchi, P. Ratini, M. Pirani, S. Mariani, A. Pauss, T. Ribeiro, O. Schoefs, J. C. Bouvier, J. Harmand and D. Mazouni (2006) Development Of Hardware Sensors For The On-Line Monitoring Of SBR Used For The Treatment Of Industrial Wastewaters, 5th MATHMOD VIENNA, IMACS Symposium on Mathematical Modelling, Vienna, 8-10 février 2006 (also presented at the Congreso Anual de la Asociación de México de Control Automático, Del 19 al 21 de Octubre del 2005, Cuernavaca, Morelos, Mexico).

Ratini P., M. Pirani, S. Mariani, L. Luccarini, D. Mazouni and J. Harmand (2006) Development of an integrated system for the optimisation of SBR’s, 5th MATHMOD VIENNA, IMACS Symposium on Mathematical Modelling, Vienna, 8-10 février 2006 (also presented at the Congreso Anual de la Asociación de México de Control Automático, Del 19 al 21 de Octubre del 2005, Cuernavaca, Morelos, Mexico).

Rapaport, A., F. Mazenc and J. Harmand (2006) Output tracking of bioprocesses through recirculation with unknown input concentration, ADCHEM 2006, April, 2-5 2006, Gramado, Brasil.

Dochain, D., M. Guay and J. Harmand (2006) Dynamical optimization of a configuration of multi-fed interconnected bioreactors by optimum seeking, CDC2006.

Harmand, J. (2006) Persistance of microorganisms in competition on a single substrate: The "virus hypothesis" revisited, Worshop on Numerical computing for groudwater flows, 20-22 September, Rabat, Marocco.

Mazouni, D., M. Ignatova and J. Harmand (2005) A multi model approach for the monitoring of carbon and nitrogen concentrations during the aerobic phase of a biological SBR, IFAC 2005 World Congress, July, 4-8 2005, Prague, Czech republic.

Mazouni, D., J. Harmand and A. Rapaport (2005) Atteinability and suboptimal minimal time control of a class of biological sequencing batch reactors, IFAC 2005 World Congress, July, 4-8 2005, Prague, Czech republic.

Harmand, J., A. Rapaport and F. Mazenc (2005) About feedback stabilization of continuous bioreactors through recirculation, IFAC 2005 World Congress, July, 4-8 2005, Prague, Czech republic.

Mazouni, D., J. Harmand, A. Rapaport and H. Hammouri (2004) Modelling and controlability analysis of an aerobic SBR, 7th African Conference on Research in Computer Science, CARI, November 22-25, 2004, Hammamet, Tunisie.

Harmand, J., L. Paulou, J. Desmoutiers, L. Garrelly, P. Dabert and J. J. Godon (2004) The microbial signature of potable waters : myth or reality?, 6th International Symposium on Systems Analysis and Integration assessment, WATERMATEX 2004, November 3-5, 2004, Beijing, China.

Ciappelloni, F., D. Mazouni, J. Harmand and L. Lardon (2004) On-line supervision and control of an aerobic SBR process, 6th International Symposium on Systems Analysis and Integration assessment, WATERMATEX 2004, November 3-5, 2004, Beijing, China.

Alcaraz-González, V., J. Harmand, A. Rapaport, J. P. Steyer, V. Gonzalez-Alvarez and C. Pelayo-Ortiz (2004) Robust Interval-Based Siso Regulation In Anaerobic Digestion, AD10, 10th Wolrd Congress on Anaerobic Digestion, August, 29th-September 2nd 2004, Montreal, Canada.

Mazouni, D., M. Ignatova and J. Harmand (2004) A simple mass-balance model for biological sequencing batch reactors used for carbon and nitrogen removal, IFAC Conference on Automatic systems for building the infrastructure in developing countries, October 3-5 2004, Bansko, Bulgaria.

Dramé, A., J. Harmand, C. Lobry and A. Rapaport (2003) Multiple steady state profiles in interconnected biological systems, 4th Mathmod Conference, 5-7 février, Vienna, Austria.

Alcaraz-Gonzalez, V., J. Harmand, D. Dochain, A. Rapaport and J. P. Steyer (2003) A robust asymptotic observer for a class of chemical and biochemical reactors: application to the anaerobic digestion, ROCOND2003, 25-27 juin, Milano, Italie.

Alcaraz-González, V., J. Harmand, A. Rapaport and J. P. Steyer (2003) Observadores robustos de intervalo : una nueva clase de sensores para procesos quimicos y biológicos altamente inciertos, 6° Congreso Interamericano de Computacion Aplicada a la Insdustria de Procesos, Mexico, October 2003.

Theilliol, D., C. Aubrun, J. C. Ponsart and J. Harmand (2002) On line estimation of unmeasured inputs for anaerobic process based on a multiple model scheme, b'02 IFAc, 21-26 juillet, Barcelone, Espagne.

Harmand, J. and A. Rapaport (2002) Interval observers for complex biotechnological systems, b'02 IFAc, 21-26 juillet, Barcelone, Espagne.

Harmand, J., M. Devisscher and J. P. Steyer (2002) Comparison of two advanced control strategies for monitoring the activated sludge processes, b'02 IFAc, 21-26 juillet, Barcelone, Espagne.

Harmand, J. and A. Rapaport (2002) Optimal design of interconnected bioreactors – some new results, 10th Mediterranean Conference on Control and Automation, MED 2002, 9-12 July, 2002, Instituto Superior Técnico, Lisboa, Portugal.

Steyer, J. P., J. Harmand and J. P. Delgenes (2002) Handling uncertainty in diagnosis using a combined interval based and a fuzzy logic based approach - Application to wastewater treatment, IPMU 2002, Ninth International Conference: Information processing and management of uncertainty in knowledge-based systems. Vol. II, Annecy, July 1-5. p. 899-904.

Astolfi, A., R. Antonnelli, J. Harmand and J. P. Steyer (2002) Output feedback regulation of an anaerobic digestion process, American Control Conference, 8-10 mai, Anchorage, Alaska, Etats-Unis.

Harmand, J., F. Miens and J. P. Steyer (2001) High gain observer for diagnosing an anaerobic fixed bed reactor, European Control Conference 2001, ECC2001, 4-7 septembre, Porto, Portugal.

Harmand, J., I. Queinnec, J. P. Steyer and J. P. D. Delgenes (2001) Optimal design of a series of anaerobic digesters to maximize production of volatile fatty acids, 5th Workshop on Electronics, Control, Modelling, Measurement and Signals, pp. 33-38, May 30 – June 1st, Toulouse, France.

Alcaraz-González, V., J. Harmand, A. Rapaport, J. P. Steyer, V. Gonzalez-Alvarez and C. Pelayo-Ortiz (2001) Robust interval-based SISO regulation of highly uncertain anaerobic digester, 8th International Conference on Computer Applications in Biotechnology, CAB8, pp. 281-286, 24-27 juin, Quebec City, Canada.

Alcaraz-González, V., J. Harmand, A. Rapaport, J. P. Steyer, V. Gonzalez-Alvarez et C. Pelayo-Ortiz (2001) Robust interval-based SISO regulation under maximum uncertainty conditions in an anaerobic digester, IEEE Conference on Control Applications, CCA2001, 5-7 septembre, Mexico City, Mexico.

Harmand, J., D. Patureau, C. Armaing, I. Queinnec and J. P. Steyer (2000) Kinetic modeling of aerobic denitrification by Microvirgula aerodenitrificans, MATHMOD'2000, 3rd IMACS Symposium on Mathematical Modelling, 2–4 février, Vienne, Autriche.

Steyer, J. P., J. Harmand and V. Alcaraz-Gonzalez (2000) Interval-based diagnosis of an anaerobic pilot plant, SAFEPROCESS'2000, 14-16 juin, Budapest, Hongrie.

Devisscher, M., J. Harmand, J. P. Steyer and P. A. Vanrolleghem (2000) Control design of an industrial equalization system – handling constraints, actuator faults and varying operating conditions, SAFEPROCESS'2000, 14–16 juin, Budapest, Hongrie.

Harmand, J. and J. P. Steyer (2000) Economical Design of Biological Systems: New Tools for Advanced Integrated Process and Control Design, International Symposium on the Mathematical Theory of Networks and Systems, 19–23 juin, Perpignan, France.

Alcaraz-González, V., J. Harmand, J. P. Steyer, V. González-Alvarez and A. Rapaport (2000) Robust interval based SISO regulation for a class of highly uncertain nonlinear systems: application to an anaerobic reactor, ROCOND'2000, 3rd IFAC Symposium on Robust Control Design, 21–23 juillet, Prague, République Tchèque.

Alcaraz-González, V., A. Maloum, J. Harmand, A. Rapaport, J. P. Steyer, V. González-Alvarez and C. Pelayo-Ortiz (2000) Robust interval-based SISO And SIMO regulation for a class of highly uncertain bioreactors: Application to the anaerobic digestion, 6 pages sur CD-ROOM, 39th IEEE Conference on Decision and Control, 12–15 décembre, Sidney, Australie.

Alcaraz-Gonzalez, V., A. Genovesi, J. Harmand, A.V. Gonzalez, A. Rapaport and J. P. Steyer (1999) Robust Exponential Nonlinear Observers for a Class of Lumped Models Useful in Chemical and Biochemical Engineering – Application to a Wastewater Treatment Process, International Workshop on Application of Interval Analysis to Systems and Control, MISC'99, pp. 225-235, 24-26 février, Girona, Espagne.

Harmand, J., J. P. Steyer, M. Devisscher and P. A. Vanrolleghem (1999) Fuzzy Supervisory Control of an Industrial Waste Water Equalization System, 3rd World Multiconference on Systemics, Cybernetics and Informatics/5th International Conference on Information Systems Analysis and Synthesis, SCI'99/ISAS'99, Vol VII, pp. 95-101, 31 juillet - 4 août, Orlando, FL, USA.

Harmand, J., J. P. Steyer, M. Devisscher, B. De Clercq, B. Vanderhaegen and P. A. Vanrolleghem (1999) Advanced Control of an Industrial Equalization System, European Control Conference 99, ECC'99, 31 août - 3 septembre, Kalsruhe, Germany.

De Clercq, B., B. Vanderhaegen, J. Harmand and P. A. Vanrolleghem (1999) Evaluation of a Rule Based Control Strategy for an equalization Facility with Technical/Physical Constraints, ECC'99, 31 août - 3 septembre, Kalsruhe, Germany.

Genovesi, A., J. Harmand and J. P. Steyer (1999) Fuzzy fault detection and isolation of an anaerobic digestion pilot-plant, 2nd European Congress of Chemical Engineering, ECCE2, 5-7 Octobre , Le Corum, Montpellier, France.

Devisscher, M., D. Rolland, N. Bernet, J. Harmand, J. P. Steyer and R. Moletta (1998) Practical Experience on Setting a Biological Process with Advanced Instrumentation for Control Purposes, Waste Decision'98, Conférence EurAgEng-IFAC, 25-27 février, Narbonne.

Hilgert, N., J. Harmand, J. P. Steyer and J. P. Vila (1998) Non Parametric Regulation of an Anaerobic Digestion Process for the Treatment of Industrial Wastewaters", Waste Decision'98, Conférence EurAgEng-IFAC, 25-27 février, Narbonne.

Rapaport, A. and J. Harmand (1998) Robust Regulation of a Bioreactor in a Highly Uncertain Environment, Waste Decision'98, Conférence EurAgEng-IFAC, 25-27 février, Narbonne.

Devisscher, M., D. Rolland, N. Bernet, J. Harmand, J. P. Steyer and R. Moletta (1998) Practical Experience on Setting a Biological Process with Advanced Instrumentation for Control Purposes, Waste Decision'98, Conférence EurAgEng-IFAC, 25-27 février, Narbonne.

Harmand, J. and J. P. Steyer (1998) The Disturbance Accommodating Control of Biological Processes, Waste Decision'98, Conférence EurAgEng-IFAC, 25-27 février, Narbonne.

Rapaport, A. and J. Harmand (1998) Robust Nonlinear Control of a Class of Partially Observed Processes : Application to Continuous Bioreactors, Conference on Control Applications, CCA'98, Trieste, Italie.

Harmand, J., J. P. Steyer and R. E. Skelton (1997) On the Disturbance Accommodating control of Biological Processes, Forum on Applied Biotechnology, FAB'97, Septembre 1997, Gent, Belgique.

Harmand, J., R. E. Skelton and J. P. Steyer (1996) Disturbance accommodation control of a nitrification process with structural uncertainties", CESA'96 IMACS Multiconference, 9-12 juillet, Lille.

Steyer, J. P., J. Harmand, N. Bernet, M. Amouroux and R. Moletta (1995) Robust Control as a Solution for Monitoring and Control of Biological Nutrient Removal Processes, Actes de Forum on Applied Biotechnology, FAB'95, pp. 2427-2434, Gent, Belgique.

Hamelin, F., J. Harmand and D. Sauter (1994) Restructurable control systems via a multi-models approach, Actes de European Robotics and Intelligent Systems Conference, EURISCON’94, Vol. 2, pp. 875-883, 22-25 août 1994, Malaga, Espagne.

I.1.5. Autres supports.

N/A

I.2 - Synthèses scientifiques (en tant qu’auteur)

I.2.1. Dans périodique à comité de lecture. 

Mannina, G., B-J Ni, J. Makinia, J. Harmand, M. Alliet, C. Brepols, M. V. Ruano, A. Robles, M. Heran, H. Gulhan, I. Rodriguez-Roda and J. Comas (2023) Biological processes modelling for MBR systems: A review of the state-of-the-art focusing on SMP and EPS, Water Research, No. 120275, https://doi.org/10.1016/j.watres.2023.120275.

V. Sandoval-García, M. Alliet, C. Brepols, A. Charfi, J. Comas, J. Harmand, M. Heran, I. Rodriguez-Roda, M.V. Ruano, I. Smets, G. Mannina, A. Robles. Towards a standardized notation framework for membrane filtration modelling in wastewater treatment. In proceedings: YWP Spain 2022 Congress, Valencia, Spain.

Mannina, G. et al. (2021) Integrated membrane bioreactors modelling: A review on new comprehensive modelling framework, Bioresource Technology 329 (2021) 124828, https://doi.org/10.1016/j.biortech.2021.124828.

Harmand, J. (2020) TREASURE, a multidisciplinary research network for water REUSE - A modeling and contrtol perspective, Applied Mathematics Seminar of the IAU (https://sites.google.com/view/webinar-iau), 8 décembre 2020.

Harmand, J. (2020) Les modèles de Lotka Volterra généralisés : intérêts et limites en écologie microbienne, Webinaire INRAE du département MICA “Comprendre et valoriser les communautés microbiennes”, 24-25 septembre 2020. 

Brepols, C., Q. Comas, J. Harmand, M. Heran, I. Rodriguez-Roda, V. Ruano, I. Smets and G. Mannina (2020) Progress towards standards in integrated (aerobic) MBR modelling , Water Science and Technology.

Robles, A., M. V. Ruano, A. Seco, J.-P. Steyer, J. Harmand, A. Charfi, J. Kim, M. Heran, G. Lesage, D. J. Batstone, José Ferrer (2018) A review on anaerobic membrane bioreactors (AnMBRs) focused on modelling and control aspects, Bioresource Technology, Vol. 270, pp. 612-626, https://doi.org/10.1016/j.biortech.2018.09.049.

Ait Mouheb, N., G. Bourrié, B. Ben Thayer, B. Benyahia, B. Cherki, N. Condom, R. Declercq, M. Héran, R. Khalifa, B. Molle, D. Patureau, P. Renault, B. Romagny, C. Sinfort, J. P. Steyer, T. Sari, N. Wery and J. Harmand (2018) The reuse of reclaimed water for irrigation around the Mediterranean Rim: a step towards a more virtuous cycle?, Regional Environmental Change, Vol. 18, No. 3, pp. 693-705, DOI: 10.1007/s10113-018-1292-z.

Wade, M. J., J. Harmand, B. Benyahia, T. Bouchez, S. Chaillou, B. Cloez, J. J. Godon, B. Moussa Boudjemaa, A. Rapaport, T. Sari, R. Arditi, and C. Lobry, (2016) Perspectives in Mathematical Modelling for Microbial Ecology, Ecological Modelling, Vol. 321, pp. 64–74, DOI: 10.1016/j.ecolmodel.2015.11.002.

Stefanie Widder, Rosalind Allen, Thomas Pfeiffer, Thomas P. Curtis, Carsten Wiuf, William T. Sloan, Otto X. Cordero, Sam P. Brown, Babak Momeni, Wenying Shou, Helen Kettle, Harry J. Flint, Andreas F. Haas, Béatrice Laroche, Jan Ulrich Kreft, Paul B. Rainey, Shiri Freilich, Stefan Schuster, Kim Milferstedt, Jan R. Van der Meer, Tobias Groβkopf, Jef Huisman, Andrew Free, Cristian Picioreanu, Christopher Quince, Isaac Klapper, Simon Labarthe, Barth F. Smets, Harris Wang, Orkun S. Soyer, Steven D. Allison, James Chong, Marco Cosentino Lagomarsino, Ottavio A. Croze, Jérôme Hamelin, Jérôme Harmand, Rebecca Hoyle, Terence T. Hwa, Qusheng Jin, David R. Johnson, Víctor De Lorenzo, Mauro Mobilia, Barry Murphy, François Peaudecerf, James I. Prosser, Robert A. Quinn, Markus Ralser, Alison G. Smith, Jean Philippe Steyer, Neil Swainston, Corina E. Tarnita, Eric Trably, Patrick B.Warren, Paul Wilmes (2016) Challenges in microbial ecology: building predictive understanding of community function and dynamics, ISME Journal, Vol. 10, pp. 2557–2568.

Charfi, A., N. Benamar and J. Harmand (2012) Analysis of fouling mechanisms in anaerobic membrane bioreactors, Water Research, Vol. 46, pp. 2637-2650.

Ranjard, L. S. Dequiedt, C. Jolivet, N. Pa Saby, J. Thioulouse, J. Harmand, P. Loisel, A. Rapaport, S. Fall, P. Simonet, R. Joffre, N. Chemidlin-Prévost Bouré, P. A. Maron, C. Mougel, M. P. Martin, B. Toutain, D. Arrouays, P. Lemanceau (2010) Mini Review - Biogeography of Soil Microbial Communities: a Review and a Description of the Ongoing French National Initiative, Agronomy for sustainable development, Vol. 30, No. 2, pp. 359-365.

Harmand, J., A. Rapaport, D. Dochain and C. Lobry (2008) Microbial ecology and bioprocess control: Opportunities and challenges, Journal of Process Control, Vol. 18, No. 8, pp. 865-875.

I.2.2. Dans périodique sans comité de lecture. 

N/A

I.2.3. Chapitre d’ouvrage. 

Steyer, J. P., A. Genovesi and J. Harmand (2008) Tools for fault detection and diagnosis. In Bioprocess control, D. Dochain (ed.), In CAM Control Systems, Robotics and Manufacturing Series, ISTE Ltd, John Wiley & Sons, Inc. Pp. 211-237.

Dochain, D. and J. Harmand (2008) Basic concepts of bioprocess control. In Bioprocess control, D. Dochain (ed.), In CAM Control Systems, Robotics and Manufacturing Series, ISTE Ltd, John Wiley & Sons, Inc. Pp. 143-171.

Dochain, D. and J. Harmand (2001) Concepts de base de la commande des bioprocédés, Chapitre 6 de l'ouvrage "Automatique des bioprocédés", Hermès Editions, pp. 149-180.

Steyer, J. P., A. Genovesi and J. Harmand (2001) Outils d'aide au diagnostic et détection de pannes", Chapitre 8 de l'ouvrage "Automatique des bioprocédés", Hermès Editions, pp. 215-244.

Steyer, J. P. and J. Harmand (2000) FDI in WWTP: comparison of different approaches and experimental results, in “Biotechnology for the environment : Wastewater Treatment and Modeling, Waste Gas Handling”, Vol. 3C, pp. 87-100, Kluwer Academic Publishers (également dans les actes de 9th European Congress on Biotechnology, ECB9, 11-15 juillet, Brussels, Belgique).

I.2.4. Ouvrage entier. 

Le troisième volume de notre série qui vient de sortie en 2019 sur le contrôle optimal se retrouve en section II.2.1 (j’en étais le coordinateur).

Harmand, J., C. Lobry, A. Rapaport et T. Sari (2017) La modélisation du chémostat, ISTE Editions, 220 pages.

Harmand, J., C. Lobry, A. Rapaport et T. Sari (2017) The Chemostat: Mathematical Theory of Microorganism Cultures, Wiley-ISTE Editions, 240 pages.

I.2.5. Rapports diplômants à caractère bibliographique (thèse vétérinaire...). 

N/A

I.2.6. Conférences dans congrès ou symposium (préciser le support écrit : résumé ou texte intégral). 

Harmand, J. (2019) Contribution of Modeling for a better understanding of microbial ecosystems, Bioautomatics and bioinformatics, texte intégral sous presse (Actes du colloque Ecological Engineering and Environmental Protection 2019, June 5-7, Burgas, Bulgaria, Keynote).

Brepols, C., Q. Comas, J. Harmand, M. Heran, I. Rodriguez-Roda, V. Ruano, I. Smets and G. Mannina (2019) Progress towards standards in integrated (aerobic) MBR modelling, 9th International Water Association (IWA) Membrane Technology Conference & Exhibition for Water and Wastewater Treatment and Reuse (IWA-MTC 2019), 23-27 June, Toulouse, France.

Harmand, J. (2013) Virtual ecosystems 2.0: towards new problems, JRI, Narbonne, France and in Bernoulli semester, Discrete, explicit simulations vs continuous aggregated models, 12-17 october 2014, Lausanne, Switzerland

Harmand, J., (2012) Modeling and control of the anaerobic digestion process : a review and some new results, Second Franco-Chilean Workshop on Bioprocess Modeling, January 16-17, Pucón, Chile.

M. Dumont, A. Rapaport, B. Benyahia, J. J. Godon, J. Harmand (2008) Automatic Control may Help to Investigate Microbial Ecological Questions, International Symposium on Biotechnology, Sfax, Tunisia, 4-8 May.

Harmand, J., D. Dochain and D. Mazouni (2007) Optimization of Sequencing Batch (Bio)Reactors – Open problems, Computers Applications in Biotechnology, 10th CAB, Cancun, Mexico, June 4-6 2007.

I.2.7. Autres supports. 

N/A

II- DOCUMENTS À VOCATION DE TRANSFERT (enseignement, développement et vulgarisation, valorisation) ou relatifs à l’animation de la recherche. 

II.1 - Travaux personnels 

II.1.1. Dans périodique à comité de lecture. 

N/A

II.1.2. Dans périodique sans comité de lecture. 

N/A

II.1.3. Chapitre d’ouvrage. 

Jaillard, B., J. Harmand, A. Rapaport (2018) Qualitative modelling of microbial community functioning. Agropolis Fondation. Complex systems: from biology to landscapes, Les Dossiers d'Agropolis International.

Harmand, J. A. Rapaport (2018) Software sensors for bioprocesses. Agropolis Fondation. Complex systems: from biology to landscapes, Les Dossiers d'Agropolis International.

Harmand, J., A. Rapaport, A. Rousseau (2018) Closed loop purification of water resources. Agropolis Fondation. Complex systems: from biology to landscapes, Les Dossiers d'Agropolis International.

Jaillard, B., J. Harmand, A. Rapaport (2018) Modélisation qualitative du fonctionnement d’assemblages microbiens. Agropolis Fondation. Systèmes complexes, de la biologie aux territoires, Les Dossiers d'Agropolis International.

Harmand, J. A. Rapaport (2018) À propos de capteurs logiciels pour les bioprocédés. Agropolis Fondation. Systèmes complexes, de la biologie aux territoires, pp.11, Les Dossiers d'Agropolis International.

Harmand, J., A. Rapaport, A. Rousseau (2018) Épuration de ressources hydriques en circuit fermé. Agropolis Fondation. Systèmes complexes, de la biologie aux territoires, Les Dossiers d'Agropolis International. 

II.1.4. Ouvrage entier. 

N/A

II.1.5. Rapport diplômant. 

N/A

II.1.6. Dans proceedings de congrès, colloques. 

N/A

II.1.7. Rapports écrits (y compris brevets, expertises,...). 

Torrijos, M., P. Sousbie et J. Harmand (2019) Déclaration d’invention intitulée « Détermination de la cinétique de biodégradation anaérobie ». Concrètement, il s’agissait de réaliser un logiciel permettant de déterminer les paramètres cinétiques et les fractions initiales de matière facilement, moyennement et lentement biodégradable pour un déchet donné. Ce logiciel est d’ores et déjà utilisé en routine par nos collègues d’Inra Transfert.

Rapaport, A., A. Rousseau and J. Harmand (2014) Procédé de traitement d'une ressource fluide, programme d'ordinateur et module de traitement associés (Brevet N° FA 78 4546 - FR 13 55129). http://prodinra.inra.fr/record/275417.

Rapaport, A., J. Harmand and I. Haidar (2013) Procédé et système de traitement biologique pour bioprocédés continus susceptibles de présenter une inhibition (Brevet N° FR 2986522). Paris, FRA : Institut National de la Propriété Industrielle. http://prodinra.inra.fr/record/221658.

Loisel, P., B. Haegeman, J. Hamelin, J. Harmand and J. J. Godon (2010) A method for measuring the biological diversity of a sample (Brevet N° EP 2203744 ( A1) - EP 2053401 (A1) - WO 2009053393 (A1), 42 p.). https://prodinra.inra.fr/record/192090

II.1.8. Créations informatiques ou audiovisuelles. 

N/A

II.2. Travaux encadrés ou coordonnés par l’auteur 

II.2.1. Edition d’un ouvrage collectif. 

Harmand, J., C. Lobry, A. Rapaport et T. Sari (2019) Apprendre à se servir du Principe du Maximum de Pontryagin - application à l’optimisation des bioprocédés, ISTE Editions, 221 pages.

Harmand, J., C. Lobry, A. Rapaport et T. Sari (2019) Optimal control in bioprocesses: Pontryagin’s Maximum Principle in practice, Wiley-ISTE Editions, 244 pages.

II.2.2. Mémoires de stages. 

Encadrement d’une trentaine de stagiaires de 2000 à 2019. 

II.2.3. Autres.

N/A