Embeddings Library for scELMo

In this website, we collected the embeddings we found or generated based on public databases or LLM outputs for different metadata information.

The prompt we used for GPT 3.5 is:

Please summarize the major function of [metadata type]: [name]. Use academic language in one paragraph and include pathway information. 

• Gene embeddings:

  • Gene-NCBI.

  • Gene-GPT 3.5.

  • Gene-GPT4o.

• Protein embeddings:

  • Protein-GPT 3.5.

• Cell embeddings:

  • Cell types-GPT 3.5.

  • Perturbation-GPT 3.5.

• Drug/Cellline embeddings for BAITSAO:

  • Drugs-GPT 3.5.

  • Celllines-GPT 3.5.

More embeddings are coming🏃‍...