Sadaf Tafazoli | Ph.D. Student
Curious about Trees and Words
Curious about Trees and Words
Research Interest | Machine Learning , Data Mining , Time Series Analysis
University of California, Riverside
Contact: stafa002@ucr.edu
[1] E. Keogh, S. Lonardi, V. B. Zordan, S.H. Lee and M. Jara.(2005). Visualizing the Similarity of Human and Chimp DNA. (Multimedia Video). http://www.cs.ucr.edu/~eamonn/DNA/
[2] Keogh, E., Wei, L., Xi, X., Lonardi, S., Shieh, J. and Sirowy, S., 2006, December. Intelligent icons: Integrating lite-weight data mining and visualization into GUI operating systems. In Data Mining, 2006. ICDM'06. Sixth International Conference on (pp. 912-916). IEEE.
Baum-Welch. Implement the Baum-Welch algorithm for HMM described in class. Test the training of the HMM on a biological relevant dataset (e.g. TF binding sites), and test in on a chrosomome. Collect experimental time measurements.
I did some study on HMM, Forward-Backward Algorithm, Viterbi Algorithm and Baum-Welch algorithm